mRNA_H-canaliculatus_F_contig14604.3547.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14604.3547.1
Unique NamemRNA_H-canaliculatus_F_contig14604.3547.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14604.3547.1 vs. uniprot
Match: D7FUZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.500e-28
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = -3 
Query:    2 RETGFNDVCVGRIGGKTTQCRLLELFRNPDRERVTGSVRLLRPAAEVQDVGEGHTRDGLVRSWEDCTKGHEMVLDVRDILDVCEIYTVAEVNAKKHLGDWD 304
            R+   +DVC+  +GG  T CRLLELF + +  +V  +VR+ R AAEV+ VGE  TR GL+R+WEDCT G E++L+V D+L + EIYTV E++A KH G+WD
Sbjct:  136 RKVFIHDVCICAVGGTPTVCRLLELFWDVESRQVVATVRMFRSAAEVRHVGETETRGGLLRTWEDCTVGGELLLEVDDVLGLAEIYTVDEMDADKHDGEWD 236
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BLAST of mRNA_H-canaliculatus_F_contig14604.3547.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.700e-25
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = -3 
Query:    2 RETGFNDVCVGRIGGKTTQCRLLELFRNPDRERVTGSVRLLRPAAEVQDVGEGHTRDGLVRSWEDCTKGHEMVLDVRDILDVCEIYTVAEVNAKKHLGDWD 304
            R+   +DVC+  +GG  T CRLLELF + +  +V  +VR  R AAEV+ VGE  TR GL R+WEDCT G E++L+V D+L + EIYT  E++A KH G+WD
Sbjct:  338 RKVFIHDVCICAVGGTPTVCRLLELFWDVESRQVVATVRTFRSAAEVRHVGETETRGGLQRTWEDCTVGGELLLEVADVLGLAEIYTEDEMDADKHDGEWD 438
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BLAST of mRNA_H-canaliculatus_F_contig14604.3547.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.180e-14
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -3 
Query:    2 LLRPAAEVQDVGEGHTRDGLVRSWEDCTKGHEMVLDVRDILDVCEIYTVAEVNAKKHLGDWD 187
            + R AAEV+ VGE  TR GL+R+WEDCT G E++L+V D+L + EIYTV E++A KH G+WD
Sbjct:    1 MFRSAAEVRHVGETETRGGLLRTWEDCTVGGELLLEVDDVLGLAEIYTVDEMDADKHDGEWD 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14604.3547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUZ8_ECTSI1.500e-2852.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC0_9PHAE4.700e-2551.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D4_ECTSI1.180e-1458.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14604contigH-canaliculatus_F_contig14604:1906..2460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14604.3547.1prot_H-canaliculatus_F_contig14604.3547.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14604 1974..2321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.6137252-UTR-H-canaliculatus_F_contig14604:1905..19731622929209.6137252-UTR-H-canaliculatus_F_contig14604:1905..1973Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14604 1906..1973 +
1696845718.988328-UTR-H-canaliculatus_F_contig14604:1905..19731696845718.988328-UTR-H-canaliculatus_F_contig14604:1905..1973Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14604 1906..1973 +
1622929209.6458025-UTR-H-canaliculatus_F_contig14604:2321..24601622929209.6458025-UTR-H-canaliculatus_F_contig14604:2321..2460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14604 2322..2460 +
1696845719.0117655-UTR-H-canaliculatus_F_contig14604:2321..24601696845719.0117655-UTR-H-canaliculatus_F_contig14604:2321..2460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14604 2322..2460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.6313274-CDS-H-canaliculatus_F_contig14604:1973..23211622929209.6313274-CDS-H-canaliculatus_F_contig14604:1973..2321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14604 1974..2321 +
1696845718.9995959-CDS-H-canaliculatus_F_contig14604:1973..23211696845718.9995959-CDS-H-canaliculatus_F_contig14604:1973..2321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14604 1974..2321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14604.3547.1

>prot_H-canaliculatus_F_contig14604.3547.1 ID=prot_H-canaliculatus_F_contig14604.3547.1|Name=mRNA_H-canaliculatus_F_contig14604.3547.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MSRTSSTISCPFVQSSHDLTSPSRVCPSPTSCTSAAGRSSLTEPVTRSLS
GFRNNSRSRHWVVFPPILPTHTSLKPVSRTKRTGRHQSRRMACSWTAYRA
CFPVLHHPTATSARH*
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mRNA from alignment at H-canaliculatus_F_contig14604:1906..2460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14604.3547.1 ID=mRNA_H-canaliculatus_F_contig14604.3547.1|Name=mRNA_H-canaliculatus_F_contig14604.3547.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=555bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14604:1906..2460+ (Hapterophycus canaliculatus Oshoro5f female)
GATCCCAGTCGCCTAGGTGCTTCTTGGCATTAACCTCTGCCACGGTGTAA
ATCTCGCACACGTCCAGGATGTCGCGCACATCCAGCACCATCTCGTGCCC
CTTTGTGCAATCTTCCCATGATCTCACAAGCCCATCTCGCGTGTGCCCTT
CGCCTACGTCTTGCACTTCTGCGGCGGGGCGAAGCAGTCTCACCGAGCCC
GTTACACGCTCCCTGTCGGGGTTCCGGAACAACTCAAGGAGCCGACACTG
GGTTGTTTTCCCGCCGATCCTCCCCACACACACGTCGTTGAAACCTGTCT
CCCGGACAAAGCGCACTGGACGCCATCAAAGTCGGCGAATGGCGTGCTCC
TGGACAGCGTACCGTGCATGTTTTCCCGTCTTGCACCATCCAACGGCAAC
GTCGGCACGCCATTAACGTGTTGCTCCTTAGTGAGTTGTCCGCCGCCTCT
TGGCCGCGCAGTAGCTTGCCTCCGGGGTGGGTCTCCGACAGGGCTGTCTC
AGATTCTAGCTAGATTCTAGCTGCATTGAACGCTCTAGAATGAGGTTCAA
CGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14604:1906..2460+

>mRNA_H-canaliculatus_F_contig14604.3547.1 ID=mRNA_H-canaliculatus_F_contig14604.3547.1|Name=mRNA_H-canaliculatus_F_contig14604.3547.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14604:1906..2460+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCGCACATCCAGCACCATCTCGTGCCCCTTTGTGCAATCTTCCCA
TGATCTCACAAGCCCATCTCGCGTGTGCCCTTCGCCTACGTCTTGCACTT
CTGCGGCGGGGCGAAGCAGTCTCACCGAGCCCGTTACACGCTCCCTGTCG
GGGTTCCGGAACAACTCAAGGAGCCGACACTGGGTTGTTTTCCCGCCGAT
CCTCCCCACACACACGTCGTTGAAACCTGTCTCCCGGACAAAGCGCACTG
GACGCCATCAAAGTCGGCGAATGGCGTGCTCCTGGACAGCGTACCGTGCA
TGTTTTCCCGTCTTGCACCATCCAACGGCAACGTCGGCACGCCATTAAAT
GTCGCGCACATCCAGCACCATCTCGTGCCCCTTTGTGCAATCTTCCCATG
ATCTCACAAGCCCATCTCGCGTGTGCCCTTCGCCTACGTCTTGCACTTCT
GCGGCGGGGCGAAGCAGTCTCACCGAGCCCGTTACACGCTCCCTGTCGGG
GTTCCGGAACAACTCAAGGAGCCGACACTGGGTTGTTTTCCCGCCGATCC
TCCCCACACACACGTCGTTGAAACCTGTCTCCCGGACAAAGCGCACTGGA
CGCCATCAAAGTCGGCGAATGGCGTGCTCCTGGACAGCGTACCGTGCATG
TTTTCCCGTCTTGCACCATCCAACGGCAACGTCGGCACGCCATTAA
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