mRNA_H-canaliculatus_F_contig14599.3538.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14599.3538.1
Unique NamemRNA_H-canaliculatus_F_contig14599.3538.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14599.3538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14599contigH-canaliculatus_F_contig14599:2..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.976748-UTR-H-canaliculatus_F_contig14599:1..61622929207.976748-UTR-H-canaliculatus_F_contig14599:1..6Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14599 2..6 +
1696845718.1661112-UTR-H-canaliculatus_F_contig14599:1..61696845718.1661112-UTR-H-canaliculatus_F_contig14599:1..6Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14599 2..6 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929208.0107384-CDS-H-canaliculatus_F_contig14599:6..3211622929208.0107384-CDS-H-canaliculatus_F_contig14599:6..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14599 7..321 +
1696845718.176509-CDS-H-canaliculatus_F_contig14599:6..3211696845718.176509-CDS-H-canaliculatus_F_contig14599:6..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14599 7..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14599.3538.1prot_H-canaliculatus_F_contig14599.3538.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14599 7..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14599.3538.1

>prot_H-canaliculatus_F_contig14599.3538.1 ID=prot_H-canaliculatus_F_contig14599.3538.1|Name=mRNA_H-canaliculatus_F_contig14599.3538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
MNSRENAIQYYTQMRKPTIQNRKLKHTSQTQNSVRSAGKTQISTKCETQE
KQRHSNPDTISKSSTHACMLLLFVHHHETTFPPQDFAHNSEVLQNACAAD
TENCQ
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mRNA from alignment at H-canaliculatus_F_contig14599:2..321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14599.3538.1 ID=mRNA_H-canaliculatus_F_contig14599.3538.1|Name=mRNA_H-canaliculatus_F_contig14599.3538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=320bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14599:2..321+ (Hapterophycus canaliculatus Oshoro5f female)
GTAGTATGAACAGCAGGGAAAACGCGATTCAATACTACACCCAAATGCGA
AAACCAACTATCCAAAACCGAAAACTCAAACACACATCTCAAACACAAAA
TTCGGTACGATCTGCAGGGAAAACGCAGATCAGCACCAAATGTGAAACCC
AAGAAAAACAGAGGCACTCAAACCCTGACACAATTTCCAAATCTTCCACG
CACGCATGTATGCTACTGCTGTTTGTGCATCATCATGAAACAACATTCCC
CCCTCAAGATTTTGCACACAACAGCGAAGTATTACAAAACGCATGCGCAG
CAGACACAGAAAATTGTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14599:2..321+

>mRNA_H-canaliculatus_F_contig14599.3538.1 ID=mRNA_H-canaliculatus_F_contig14599.3538.1|Name=mRNA_H-canaliculatus_F_contig14599.3538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14599:2..321+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAGCAGGGAAAACGCGATTCAATACTACACCCAAATGCGAAAACC
AACTATCCAAAACCGAAAACTCAAACACACATCTCAAACACAAAATTCGG
TACGATCTGCAGGGAAAACGCAGATCAGCACCAAATGTGAAACCCAAGAA
AAACAGAGGCACTCAAACCCTGACACAATTTCCAAATCTTCCACGCACGC
ATGTATGCTACTGCTGTTTGTGCATCATCATGAAACAACATTCCCCCCTC
AAGATTTTGCACACAACAGCGAAGTATTACAAAACGCATGCGCAGCAGAC
ACAGAAAATTGTCAGATGAACAGCAGGGAAAACGCGATTCAATACTACAC
CCAAATGCGAAAACCAACTATCCAAAACCGAAAACTCAAACACACATCTC
AAACACAAAATTCGGTACGATCTGCAGGGAAAACGCAGATCAGCACCAAA
TGTGAAACCCAAGAAAAACAGAGGCACTCAAACCCTGACACAATTTCCAA
ATCTTCCACGCACGCATGTATGCTACTGCTGTTTGTGCATCATCATGAAA
CAACATTCCCCCCTCAAGATTTTGCACACAACAGCGAAGTATTACAAAAC
GCATGCGCAGCAGACACAGAAAATTGTCAG
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