mRNA_H-canaliculatus_F_contig1458.3531.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1458.3531.1 vs. uniprot
Match: D8LH49_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH49_ECTSI) HSP 1 Score: 217 bits (553), Expect = 1.620e-66 Identity = 190/278 (68.35%), Postives = 206/278 (74.10%), Query Frame = 1
Query: 22 MKGSVPDTQDETGRTGLHQAVVKGDVDEVGFLLSSGASPNTQDAHLQTPVTLAAERGLYEVVKALAEHHDTDINLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACSADGGGEGGIAEKGESEERSLQVIELLVGAGADVRASNDRGEKPMDLVRSEAVLALLVSAAKEVDKQEDEEVREAQSLDVAATPENASDTPA---SAPATETRASRAGTGWPAKQQQ----GAGSKAFTKTGVGGGVVTGAAGGVKKKIVIKLKKK 834
MKGS+PDTQDETGRT LHQA VKGDVDEVGFLLSSGA+PNTQDAHLQTPVTLAAERGLYEVVKALAE TDIN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACS G + ++ + EE S QV+ELL+GAGADV A NDRGEKP+DLV +E+VLALLVSAA+E+DK+E + P +T GWP KQQQ G SKAFTK GV GG GAA G KKKIVIKLKKK
Sbjct: 1 MKGSIPDTQDETGRTSLHQAAVKGDVDEVGFLLSSGANPNTQDAHLQTPVTLAAERGLYEVVKALAELDATDINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACSVAGVSD--TSDTRDLEESSCQVVELLIGAGADVGAKNDRGEKPVDLVTNESVLALLVSAAQELDKREXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPIGQTA------GWPTKQQQQQGAGTASKAFTKQGVAGGPTAGAAAGTKKKIVIKLKKK 270
BLAST of mRNA_H-canaliculatus_F_contig1458.3531.1 vs. uniprot
Match: UPI001863FEFD (ankyrin repeat and EF-hand domain-containing protein 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863FEFD) HSP 1 Score: 55.1 bits (131), Expect = 7.150e-5 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 43 TQDETGRTGLHQAVVKGDVDEVGFLLSSGASPNTQDAHLQTPVTLAAERGLYEVVKALA 219
++ + G T LHQA + D D V FLLS GA P++QD +TPV LA + GLY++V+ LA
Sbjct: 45 SEPKEGLTALHQASMANDGDMVRFLLSVGAFPDSQDKTGRTPVMLATQLGLYDIVELLA 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1458.3531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1458.3531.1 >prot_H-canaliculatus_F_contig1458.3531.1 ID=prot_H-canaliculatus_F_contig1458.3531.1|Name=mRNA_H-canaliculatus_F_contig1458.3531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=275bp MKGSVPDTQDETGRTGLHQAVVKGDVDEVGFLLSSGASPNTQDAHLQTPVback to top mRNA from alignment at H-canaliculatus_F_contig1458:17337..21769- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1458.3531.1 ID=mRNA_H-canaliculatus_F_contig1458.3531.1|Name=mRNA_H-canaliculatus_F_contig1458.3531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4433bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:17337..21769- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1458:17337..21769- >mRNA_H-canaliculatus_F_contig1458.3531.1 ID=mRNA_H-canaliculatus_F_contig1458.3531.1|Name=mRNA_H-canaliculatus_F_contig1458.3531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1650bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:17337..21769- (Hapterophycus canaliculatus Oshoro5f female)back to top |