mRNA_H-canaliculatus_F_contig1458.3530.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1458.3530.1
Unique NamemRNA_H-canaliculatus_F_contig1458.3530.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: D8LH45_ECTSI (Splicing factor YJU2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH45_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 3.000e-140
Identity = 267/349 (76.50%), Postives = 281/349 (80.52%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKAAAARRENTAADLVGKGAGELDEDDAMIANIQFGGAKVRRLADGDDSNSDGASDSAMAAPPERKPKPMNGGHDGVSLKGKGKKRPAGDGXXXXXXXXXATHRFQPSRKSGTSTGXXXXXXXXXXXXXXXXXXDESRAEDATGSTLVSAIEAQAKREAEKIKAGVEGSVGTKIVVK 1047
            MGERKVL KYFPPDFDPKKVPR+KRDPEKQIGVRMMIPFS+QCNTCGEFMYRGKKFNSLKEDCIGEDYL IRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEK+HKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKA+AARR  +  D  G GAGE  E DAMIANIQFGG+KVRRL D D+ NSDGA D+A  A           G +  S   KG        XXXXXXXXX                XXXXXXXXXXXXXXXXXX   +A D+ GS LVSAIEAQA+REAE +KA V GSVGTK+VVK
Sbjct:    1 MGERKVLCKYFPPDFDPKKVPRLKRDPEKQIGVRMMIPFSMQCNTCGEFMYRGKKFNSLKEDCIGEDYLTIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKEHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKASAARRNKSVGDKGGAGAGENAEVDAMIANIQFGGSKVRRLVDADEDNSDGAGDTATEA----------NGTNPPSKSFKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKA-DSAGSALVSAIEAQARREAEAMKAAVAGSVGTKVVVK 338
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A835Z1Z4_9STRA (Splicing factor YJU2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z4_9STRA)

HSP 1 Score: 253 bits (646), Expect = 4.040e-77
Identity = 123/177 (69.49%), Postives = 146/177 (82.49%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKAAA 531
            MGERKVLNKYFPPDFDP K+PRM+R    Q+ VRMM+PF++QC  C EFMYRGKKFNS KEDC GEDY GIR+FRFYIKC+ C+QEITFKTDPE  DYELE GA+RNFESW + +A E K   AR  E+K+D MK LENRTLDSKIE++I+DALDEI+AVN+RHE V+T  +L++ A
Sbjct:    1 MGERKVLNKYFPPDFDPSKIPRMRRGKNHQVEVRMMLPFTIQCTVCSEFMYRGKKFNSKKEDCEGEDYKGIRKFRFYIKCITCNQEITFKTDPEHADYELEVGATRNFESWRETEAAETKAVAARAAEDKNDPMKALENRTLDSKIEMDILDALDEIRAVNKRHERVDTAAILESRA 177
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A1W0A1I0_9STRA (Splicing factor YJU2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1I0_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.220e-72
Identity = 117/173 (67.63%), Postives = 141/173 (81.50%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVL 519
            MGERKVLNKYFPPDFDP K+PR K+   KQI VRMM+PFS+QC TCGE+MYRGKKFNS KED + EDY GI+ FRFYI+CV C+ EITFKTDP+ GDY  E G  RNFE W + +A ++K  + REEEEK D+MKQLENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L
Sbjct:    1 MGERKVLNKYFPPDFDPSKIPRRKQPKNKQIEVRMMLPFSIQCATCGEYMYRGKKFNSRKEDVLEEDYHGIKIFRFYIRCVTCASEITFKTDPQHGDYVAEHGCQRNFEPWRENEANDEKMLKEREEEEKGDSMKQLENRTLDSKREMDILDALDEIKAINQRHAKVDTDALL 173
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A2D4C0T0_PYTIN (Splicing factor YJU2 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0T0_PYTIN)

HSP 1 Score: 239 bits (611), Expect = 1.230e-72
Identity = 129/217 (59.45%), Postives = 156/217 (71.89%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKAAAARRENTAADLVGKGAGELDEDDAMIANIQFGGAKVRRLAD 651
            MGERKVLNKYFPPDFDP  VPR KR   +QI VRMM+PFS+QC TCGE+MYRGKKFNS KED + E+YLGIR FRFYIKCV CS EITFKTDP+ GDY  E G  RNFE W +K+A E+   + RE+EEK D MK LENRTLDSK E++I+DALDEIKA+N+RH  ++T+ +L+  A       A    +   +  E+DA +A   F   K R LA+
Sbjct:    1 MGERKVLNKYFPPDFDPSIVPRRKRPKNQQIEVRMMLPFSIQCATCGEYMYRGKKFNSRKEDVVEENYLGIRIFRFYIKCVTCSSEITFKTDPKNGDYVAEHGCQRNFEPWREKEAAEEAAMKQREDEEKGDAMKALENRTLDSKREMDILDALDEIKAINQRHAKIDTDQLLQQHAQLDSAQQA----QDEQQQLEEDAKLARQVFEQRKKRPLAE 213
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A6G0XWY7_9STRA (Splicing factor YJU2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWY7_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.300e-72
Identity = 117/174 (67.24%), Postives = 141/174 (81.03%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLK 522
            MGERKVLNKYFPPDFDPK +PR +    KQI VRMM+PFS+QCN CGEFMY+GKKFNS KED + EDY GIR +RFYI+C +CS EITFKTDP+ GDY  E G  RNFE W ++ A EK+  +AREEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L+
Sbjct:    1 MGERKVLNKYFPPDFDPKLIPRRRMPKNKQIEVRMMLPFSIQCNACGEFMYQGKKFNSRKEDVLDEDYFGIRIYRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEPWRERAADEKEAVKAREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDALLQ 174
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A024UUI7_9STRA (Splicing factor YJU2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUI7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.810e-71
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVL 519
            MGERKVLNKYFPPDFDP+ +PR K    KQI VRMM+PFS+QCNTCGEFMY+GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE W +++A E    + REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L
Sbjct:    1 MGERKVLNKYFPPDFDPRLIPRRKIPKNKQIEVRMMLPFSIQCNTCGEFMYQGKKFNSRKEDVLDEDYFGVKIFRFYIRCSMCSSEITFKTDPKNGDYATEHGCKRNFEQWREREADEAAILKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDAIL 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A8K1C367_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C367_PYTOL)

HSP 1 Score: 235 bits (600), Expect = 5.760e-71
Identity = 117/179 (65.36%), Postives = 140/179 (78.21%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKAAAAR 537
            MGERKVLNKYFPPDFDP  +PR KR   +QI VRMM+PFS+QC TCGE+MYRGKKFNS KED + EDY GIR FRFYIKCV CS EITFKTDP+ GDY  E G  RNFE W +K A E+   + +E+EEK D MK LENRTLDSK E++I+DALDEIKA+N+RH  ++T+ +L+  A +
Sbjct:    1 MGERKVLNKYFPPDFDPSIIPRRKRPKNQQIEVRMMLPFSIQCATCGEYMYRGKKFNSRKEDVVEEDYFGIRIFRFYIKCVTCSSEITFKTDPKNGDYVAEHGCQRNFEPWREKDAEEEAALKQKEDEEKGDAMKVLENRTLDSKREMDILDALDEIKAINQRHSKIDTDALLQQHAQK 179
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BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A1V9Y4X5_9STRA (Splicing factor YJU2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4X5_9STRA)

HSP 1 Score: 234 bits (597), Expect = 7.630e-71
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVL 519
            MGERKVLNKYFPPDFDP  +PR K+    QI VRMM+PFS+QC+TCGE+MYRGKKFNS KED + EDY GI+ FRFYI+C+ C+ EITFKTDP+ GDY  E G  RNFE W +K A E+K  + REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L
Sbjct:    1 MGERKVLNKYFPPDFDPSLIPRRKQPKNMQIEVRMMLPFSIQCSTCGEYMYRGKKFNSRKEDVLEEDYHGIKIFRFYIRCITCASEITFKTDPQHGDYVAEHGCQRNFEPWREKDADEEKMLKEREEEEKGDSMKALENRTLDSKREMDILDALDEIKAINQRHAKVDTDALL 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: A0A485KX06_9STRA (Splicing factor YJU2 n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KX06_9STRA)

HSP 1 Score: 234 bits (598), Expect = 8.390e-71
Identity = 123/220 (55.91%), Postives = 156/220 (70.91%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVLKAAAARRENTAADLVGKGAGELDEDDAMIANIQ-FGGAKVRRLADGD 657
            MGERKVLNKYFPPDFDP+ +PR K    KQI VRMM+PFS+QCN CGEFMY+GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE+W D++A  +   + REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L+    +  N   D        +  DD + + ++ F   K+   A GD
Sbjct:    1 MGERKVLNKYFPPDFDPRLIPRRKIPKNKQIEVRMMLPFSIQCNACGEFMYQGKKFNSRKEDVLDEDYFGVKIFRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEAWRDREADAQAVLKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDALLQKV--KHVNDPNDPTATAGNTILNDDEIQSQVEAFRKRKLEATATGD 218
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Match: W4H735_9STRA (Splicing factor YJU2 n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H735_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.950e-70
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 1 
Query:    1 MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFMYRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYELETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEIMDALDEIKAVNRRHETVNTEDVL 519
            MGERKVLNKYFPPDFDP+ +PR K    KQI VRMM+PFS+QCN CGEFMY+GKKFNS KED + EDY G++ FRFYI+C +CS EITFKTDP+ GDY  E G  RNFE W +++A E    + REEEEK D+MK LENRTLDSK E++I+DALDEIKA+N+RH  V+T+ +L
Sbjct:    1 MGERKVLNKYFPPDFDPRLIPRRKIPKNKQIEVRMMLPFSIQCNACGEFMYQGKKFNSRKEDVMDEDYFGVKIFRFYIRCSMCSNEITFKTDPKNGDYATEHGCKRNFEQWREREADEAAILKEREEEEKGDSMKALENRTLDSKREMDIIDALDEIKAINQRHAKVDTDAIL 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1458.3530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH45_ECTSI3.000e-14076.50Splicing factor YJU2 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z1Z4_9STRA4.040e-7769.49Splicing factor YJU2 n=1 Tax=Tribonema minus TaxID... [more]
A0A1W0A1I0_9STRA1.220e-7267.63Splicing factor YJU2 n=1 Tax=Thraustotheca clavata... [more]
A0A2D4C0T0_PYTIN1.230e-7259.45Splicing factor YJU2 n=2 Tax=Pythium insidiosum Ta... [more]
A0A6G0XWY7_9STRA2.300e-7267.24Splicing factor YJU2 n=1 Tax=Aphanomyces euteiches... [more]
A0A024UUI7_9STRA2.810e-7166.47Splicing factor YJU2 n=1 Tax=Aphanomyces invadans ... [more]
A0A8K1C367_PYTOL5.760e-7165.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9Y4X5_9STRA7.630e-7166.47Splicing factor YJU2 n=1 Tax=Achlya hypogyna TaxID... [more]
A0A485KX06_9STRA8.390e-7155.91Splicing factor YJU2 n=2 Tax=Aphanomyces TaxID=100... [more]
W4H735_9STRA1.950e-7065.90Splicing factor YJU2 n=5 Tax=Aphanomyces astaci Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1458contigH-canaliculatus_F_contig1458:6570..10742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.3
Seed ortholog evalue1.4e-115
Seed eggNOG ortholog2880.D8LH45
Preferred nameCCDC94
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030431,GO:0032501,GO:0032991,GO:0034622,GO:0034641,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043516,GO:0043518,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0060548,GO:0065003,GO:0065007,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:1901214,GO:1901215,GO:1901360,GO:1901796,GO:1901797,GO:1902494,GO:1902531,GO:1902532,GO:1990904,GO:2001020,GO:2001021
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5134@1,KOG2989@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCWC16 protein
Ec32 orthologEc-24_000500.1
Exons5
Model size1350
Cds size1350
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1458.3530.1prot_H-canaliculatus_F_contig1458.3530.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1458 6570..10742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.2037828-CDS-H-canaliculatus_F_contig1458:6569..67241622929207.2037828-CDS-H-canaliculatus_F_contig1458:6569..6724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 6570..6724 +
1696845717.8339107-CDS-H-canaliculatus_F_contig1458:6569..67241696845717.8339107-CDS-H-canaliculatus_F_contig1458:6569..6724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 6570..6724 +
1622929207.2228014-CDS-H-canaliculatus_F_contig1458:7653..77521622929207.2228014-CDS-H-canaliculatus_F_contig1458:7653..7752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 7654..7752 +
1696845717.8462422-CDS-H-canaliculatus_F_contig1458:7653..77521696845717.8462422-CDS-H-canaliculatus_F_contig1458:7653..7752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 7654..7752 +
1622929207.2417452-CDS-H-canaliculatus_F_contig1458:8608..87281622929207.2417452-CDS-H-canaliculatus_F_contig1458:8608..8728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 8609..8728 +
1696845717.8564053-CDS-H-canaliculatus_F_contig1458:8608..87281696845717.8564053-CDS-H-canaliculatus_F_contig1458:8608..8728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 8609..8728 +
1622929207.2594013-CDS-H-canaliculatus_F_contig1458:9222..94091622929207.2594013-CDS-H-canaliculatus_F_contig1458:9222..9409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 9223..9409 +
1696845717.8663802-CDS-H-canaliculatus_F_contig1458:9222..94091696845717.8663802-CDS-H-canaliculatus_F_contig1458:9222..9409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 9223..9409 +
1622929207.2787356-CDS-H-canaliculatus_F_contig1458:9953..107421622929207.2787356-CDS-H-canaliculatus_F_contig1458:9953..10742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 9954..10742 +
1696845717.8757882-CDS-H-canaliculatus_F_contig1458:9953..107421696845717.8757882-CDS-H-canaliculatus_F_contig1458:9953..10742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 9954..10742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1458.3530.1

>prot_H-canaliculatus_F_contig1458.3530.1 ID=prot_H-canaliculatus_F_contig1458.3530.1|Name=mRNA_H-canaliculatus_F_contig1458.3530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=450bp
MGERKVLNKYFPPDFDPKKVPRMKRDPEKQIGVRMMIPFSLQCNTCGEFM
YRGKKFNSLKEDCIGEDYLGIRRFRFYIKCVICSQEITFKTDPEKGDYEL
ETGASRNFESWTDKQATEKKHKEAREEEEKSDNMKQLENRTLDSKIELEI
MDALDEIKAVNRRHETVNTEDVLKAAAARRENTAADLVGKGAGELDEDDA
MIANIQFGGAKVRRLADGDDSNSDGASDSAMAAPPERKPKPMNGGHDGVS
LKGKGKKRPAGDGGGGAAAAGGATHRFQPSRKSGTSTGGTGGADEEEEGK
GEGGGGDESRAEDATGSTLVSAIEAQAKREAEKIKAGVEGSVGTKIVVKK
QKKRRDKGGAGDGEAGGGASASKKRKKHKSKDKEKRRERTGSVAEANGNL
GAAASAPAEAGGSGGGGGGAGAAGLGGLNLLGSYASSSGSDGDGGGDAT*
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mRNA from alignment at H-canaliculatus_F_contig1458:6570..10742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1458.3530.1 ID=mRNA_H-canaliculatus_F_contig1458.3530.1|Name=mRNA_H-canaliculatus_F_contig1458.3530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4173bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:6570..10742+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGAACGCAAGGTGCTCAACAAGTACTTCCCCCCGGACTTCGACCC
CAAGAAGGTCCCGCGGATGAAGCGCGATCCGGAGAAGCAGATCGGCGTCC
GGATGATGATCCCCTTCTCCTTGCAGTGCAACACGTGCGGGGAGTTCATG
TACAGGTGCGACGTCGGTGGTTGTTTTGGCGCTGACCACCTTCAGAGGGC
TTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGAACGCAC
CAATGAGGCAACGTCGATTTCCCCCCCCGCGGCTTGTAGGTAGTGAAGGA
CGAACCTCGAACACCTTTGATAGTCCAGAGACGGCTGGCGTTGTTGGTTG
TCGCATCCTATCCGGCGGGTTTCCGTCGATAGTGGCCTATCCCTCAAGTG
GATGTCAAAAATGTAAGGGTGGGAGCTCATAGTATCCGTCAAGGTCAAGG
TGCTCTTGTTGTGTTGATCAATTCATTATCTCTCCAGGTGTTGCTGCAGT
TGCTCCTGCCGCCGCCGCCTCTGTTGACGCAACCCCTCGGTGTCCTTCTT
GCAACCGTTGGTGCTCCAGATACATCCAGTCCAGATGCATCCAGTCCCTT
GCGGAACAAAGAAGCTCGTATTGATATCCGCGTGATCTCGATCTCATGAA
CACGACCCATCTCCACCAACTGCAGTTGCTGAGGTTACCTCGTTGCCGAC
GGCTACTCGTATGCTTTGTTCACTTGAGATTCAAACCAACAAGCGCTGTC
GCAGGATCGTCCGCCCTCTAGTTTGAGTTTAGGACTCTGTACACTGCAGT
ACAACAGCCACGAGAAAATCAGTACCGCGCTGGTGAGCTCTGGCTGGACT
AGTGTAATGTTACTGCCTGGTGTTATTACCTCTCGAGACCAACATGCTTT
ACGATAACGTGCGACTCTTGTCAAGCCTTCCTCAGGGGTCTCGCAGGCTG
GCCCCGCAAAAGGCCAAGGCATGCCCTTACGTTGTGCTATTTTTGCTGCT
GCTGCTGTCGCTGTTGTCGTTGCTCCTGTTGTTGCTGCGGTTGCTGGCAT
GGCTTTCTTTTCCATGTGGTCCTCTCGGTCCCAGGGGTAAGAAATTTAAC
TCCCTGAAGGAGGACTGCATCGGCGAGGACTACCTGGGCATCCGGAGGTT
TCGTTTCTACATCAAATGCGTCATCTGCAGCCAGTGAGTCTAGCGCAACG
TGAAGATTTGTGATTCCCGCGTTTGACTGCAACAAAATAGCACCTGGTAC
TGACTTCGTATAACCTGGCGCATGTACAAATACCATGTCACGGACGCCTG
GCGCATGTGTCGTATGCGTACGTCCTCACGTCCTCACTCGTGTGGTGAGA
AGGTCGATATCTGGGCTACCTCTTGTGCTCCTCCTAGAGAGGAAGAATGG
ATCAGCCTGACCTCTCGTTCCCTCGCGGGGGACCGCGGGCGCTGGCAGCA
ACAAACCATGGAAGTTCTTGTACCAGCGACGTGGGCAGCGAACAACCACC
CGGGTTGCCCCATGCTGCTCACGGAAGCACACAGACATCAGTGTCCAGTG
CTTCTGTCGCCCTGCCTCTTGCGAGTGCGCCTGCCGTTCATCGCGCCCCT
TTCCTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGT
CGAGGAGTCAGCCTGCCCGAATTTCAAACAAGCCTGAGATTTAAGAGAAA
TACCAAGTAGTCAAGAACCCCACAAGACAAAAGAGGAATATCCTCCGCAG
AGACAAATGTGATATCCCTAGCGACCCAGGAGGGTTATCTTGATTCCTTT
CCACAGTGTCTGTTTGACCTTGGCGATCGGTTTTGAAGGCGGTCCGGCGG
GTCGCACTGAGGAAGGAGCACGGCGGCTGCTGCTTGGTTTGGCCCTTGCG
CCTGACACTGTTCGTGTCCCGTCGTCTTTCGCCTCACGGTTGGGAAGCCC
GCCCAGTCTGGCGAAAGGGCGGCGTGCAGCACAAGAAACGCGAGTTGGAT
CTTTATTTTGCACCTGTGCGATCGTGCGGCGTGCTGCAGGGAGATCACTT
TCAAAACAGACCCCGAGAAAGGGGACTACGAGCTGGAGACGGGAGCATCG
AGAAACTTCGAGTCGTGGACCGACAAGCAGGCCACGGAAAAGAAACACAA
GGAGGCCAGGTGCGGAGGAAGGCCACGGCTAATGCTTGTAGTCCGCGCGT
GGACGTGGTGATGAGACCCCGATGGTCGACGAGTTGGTCTCAGGTGCTGG
TGGGAGTGGTCCGCTTTTTGGCTACGTAGATGCGGCACTCCAGTGACAAG
ATAGGCCCGTAGTCGGTGTTGGTACCCTCGTGGTTGCTCCGTGCTCCGTC
GTCCACTGTCAGACGTCACCTGCTTAAAGTCCGCTCAAGTTCCTTTGTCG
TGTGTCCCTTTGCAGCCCTCTTGCATGGGTGGTTTGGATCCGTAGTGCTG
ACTCGGGCGGGTGCTGCGTGAAATGGCGTGCGAAGACCCATGACGTTGTT
GCGCGCGGTAAGGATATCGTATCCATCCTACAAGTATTACTATTTGCCAA
CACAAGTACAGTACACGCTCAATGTACTCTTCGCCTTGCTTTTGATTGTT
TGTTCGTCTGTCTTCCTGTCTGTCTGCGCACCTGCTCATGTTTTTTTCCG
CAGGGAGGAAGAGGAGAAAAGCGATAACATGAAGCAGCTCGAGAACCGCA
CGCTGGACTCCAAGATCGAGCTGGAGATCATGGACGCTCTGGACGAGATC
AAGGCCGTGAACCGCAGGCACGAAACCGTGAACACGGAAGATGTGCTGAA
GGCCGCGGCAGCTAGGAGAGAAAACACCGCTGCCGACCTGGTGAGGCGAG
CGCGGTGACGCCCGTGTCGATGGTGGCCTACTCGGAAGTGCTGGTGTTTC
AGCGTCTCCTATTGCATGTATGCCAGCTGTTTACCGTTTCCTTGTGCAGC
GCGCGTTAATAATTTGACGTGATGGTCCTAGTTTGGCCCCTCGTGAGCTC
GAAATGAAACGAGCGAAAGCATCGCATACCACAGGCAGGCGTTGGTCAGC
CTCAACTCGTCTTAGCGGGGGACTGTTGTTGGTTCGAAAGCGACCATACC
CAATAAATCGCACGTCCTGGTTGTGCTGCACAGCTTTGACTCGAACGTGA
GCATCCGACGGTGTGCCTCTCTCAAGCTGTCTAATCTTGTTTGGTGTCTC
CTTGATTGTGTCGTTGACAGTCTTCTCGGTGGCGTGCCCCCCTAGGCATG
GTCACGACATCAATCCGTCAGCCATCTCACGCGGTTCGTATGCTCTGATC
CAGCTCATGTCGTCGTTCGAGCACTTCGCCCCCCCGCTCAGCTTCCCTCT
TTCCCCTCCTCCCTCTGATCCCCTTCTTTCGCAGGTGGGAAAGGGCGCTG
GAGAATTGGACGAGGACGACGCGATGATCGCGAACATCCAATTCGGGGGG
GCAAAGGTCCGCCGATTGGCAGACGGCGACGACAGCAACAGCGACGGGGC
TAGCGATTCTGCCATGGCCGCCCCGCCCGAGCGAAAGCCGAAGCCGATGA
ATGGCGGACACGACGGCGTAAGTTTGAAAGGAAAGGGGAAGAAGCGGCCC
GCCGGGGATGGCGGGGGCGGCGCAGCTGCGGCAGGTGGGGCGACACACCG
GTTCCAACCTTCCCGAAAGTCGGGCACATCAACGGGCGGCACCGGGGGTG
CCGACGAGGAAGAGGAGGGGAAGGGAGAGGGGGGTGGGGGGGACGAGAGC
CGCGCGGAAGACGCGACGGGATCGACGCTGGTTTCCGCCATTGAGGCCCA
GGCCAAGCGGGAAGCCGAGAAGATCAAGGCTGGCGTAGAGGGGTCCGTGG
GGACCAAGATCGTGGTGAAGAAGCAAAAGAAGCGGAGAGATAAAGGCGGC
GCCGGCGACGGCGAGGCGGGGGGGGGGGCGAGCGCCTCCAAGAAGCGAAA
AAAACACAAGAGCAAGGACAAGGAGAAGAGGAGGGAAAGGACCGGCAGCG
TCGCCGAGGCGAATGGGAACCTAGGGGCAGCAGCGTCAGCTCCGGCTGAG
GCGGGTGGGAGTGGGGGCGGGGGCGGGGGCGCCGGCGCGGCAGGGCTTGG
CGGGTTAAACTTGTTGGGGTCGTACGCGTCGTCTTCCGGGTCCGACGGCG
ACGGTGGTGGCGATGCGACTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1458:6570..10742+

>mRNA_H-canaliculatus_F_contig1458.3530.1 ID=mRNA_H-canaliculatus_F_contig1458.3530.1|Name=mRNA_H-canaliculatus_F_contig1458.3530.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2700bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:6570..10742+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGAACGCAAGGTGCTCAACAAGTACTTCCCCCCGGACTTCGACCC
CAAGAAGGTCCCGCGGATGAAGCGCGATCCGGAGAAGCAGATCGGCGTCC
GGATGATGATCCCCTTCTCCTTGCAGTGCAACACGTGCGGGGAGTTCATG
TACAGATGGGTGAACGCAAGGTGCTCAACAAGTACTTCCCCCCGGACTTC
GACCCCAAGAAGGTCCCGCGGATGAAGCGCGATCCGGAGAAGCAGATCGG
CGTCCGGATGATGATCCCCTTCTCCTTGCAGTGCAACACGTGCGGGGAGT
TCATGTACAGGGGTAAGAAATTTAACTCCCTGAAGGAGGACTGCATCGGC
GAGGACTACCTGGGCATCCGGAGGTTTCGTTTCTACATCAAATGCGTCAT
CTGCAGCCAGGGTAAGAAATTTAACTCCCTGAAGGAGGACTGCATCGGCG
AGGACTACCTGGGCATCCGGAGGTTTCGTTTCTACATCAAATGCGTCATC
TGCAGCCAGGAGATCACTTTCAAAACAGACCCCGAGAAAGGGGACTACGA
GCTGGAGACGGGAGCATCGAGAAACTTCGAGTCGTGGACCGACAAGCAGG
CCACGGAAAAGAAACACAAGGAGGCCAGGGAGATCACTTTCAAAACAGAC
CCCGAGAAAGGGGACTACGAGCTGGAGACGGGAGCATCGAGAAACTTCGA
GTCGTGGACCGACAAGCAGGCCACGGAAAAGAAACACAAGGAGGCCAGGG
AGGAAGAGGAGAAAAGCGATAACATGAAGCAGCTCGAGAACCGCACGCTG
GACTCCAAGATCGAGCTGGAGATCATGGACGCTCTGGACGAGATCAAGGC
CGTGAACCGCAGGCACGAAACCGTGAACACGGAAGATGTGCTGAAGGCCG
CGGCAGCTAGGAGAGAAAACACCGCTGCCGACCTGGGAGGAAGAGGAGAA
AAGCGATAACATGAAGCAGCTCGAGAACCGCACGCTGGACTCCAAGATCG
AGCTGGAGATCATGGACGCTCTGGACGAGATCAAGGCCGTGAACCGCAGG
CACGAAACCGTGAACACGGAAGATGTGCTGAAGGCCGCGGCAGCTAGGAG
AGAAAACACCGCTGCCGACCTGGTGGGAAAGGGCGCTGGAGAATTGGACG
AGGACGACGCGATGATCGCGAACATCCAATTCGGGGGGGCAAAGGTCCGC
CGATTGGCAGACGGCGACGACAGCAACAGCGACGGGGCTAGCGATTCTGC
CATGGCCGCCCCGCCCGAGCGAAAGCCGAAGCCGATGAATGGCGGACACG
ACGGCGTAAGTTTGAAAGGAAAGGGGAAGAAGCGGCCCGCCGGGGATGGC
GGGGGCGGCGCAGCTGCGGCAGGTGGGGCGACACACCGGTTCCAACCTTC
CCGAAAGTCGGGCACATCAACGGGCGGCACCGGGGGTGCCGACGAGGAAG
AGGAGGGGAAGGGAGAGGGGGGTGGGGGGGACGAGAGCCGCGCGGAAGAC
GCGACGGGATCGACGCTGGTTTCCGCCATTGAGGCCCAGGCCAAGCGGGA
AGCCGAGAAGATCAAGGCTGGCGTAGAGGGGTCCGTGGGGACCAAGATCG
TGGTGAAGAAGCAAAAGAAGCGGAGAGATAAAGGCGGCGCCGGCGACGGC
GAGGCGGGGGGGGGGGCGAGCGCCTCCAAGAAGCGAAAAAAACACAAGAG
CAAGGACAAGGAGAAGAGGAGGGAAAGGACCGGCAGCGTCGCCGAGGCGA
ATGGGAACCTAGGGGCAGCAGCGTCAGCTCCGGCTGAGGCGGGTGGGAGT
GGGGGCGGGGGCGGGGGCGCCGGCGCGGCAGGGCTTGGCGGGTTAAACTT
GTTGGGGTCGTACGCGTCGTCTTCCGGGTCCGACGGCGACGGTGGTGGCG
ATGCGACTTGAGTGGGAAAGGGCGCTGGAGAATTGGACGAGGACGACGCG
ATGATCGCGAACATCCAATTCGGGGGGGCAAAGGTCCGCCGATTGGCAGA
CGGCGACGACAGCAACAGCGACGGGGCTAGCGATTCTGCCATGGCCGCCC
CGCCCGAGCGAAAGCCGAAGCCGATGAATGGCGGACACGACGGCGTAAGT
TTGAAAGGAAAGGGGAAGAAGCGGCCCGCCGGGGATGGCGGGGGCGGCGC
AGCTGCGGCAGGTGGGGCGACACACCGGTTCCAACCTTCCCGAAAGTCGG
GCACATCAACGGGCGGCACCGGGGGTGCCGACGAGGAAGAGGAGGGGAAG
GGAGAGGGGGGTGGGGGGGACGAGAGCCGCGCGGAAGACGCGACGGGATC
GACGCTGGTTTCCGCCATTGAGGCCCAGGCCAAGCGGGAAGCCGAGAAGA
TCAAGGCTGGCGTAGAGGGGTCCGTGGGGACCAAGATCGTGGTGAAGAAG
CAAAAGAAGCGGAGAGATAAAGGCGGCGCCGGCGACGGCGAGGCGGGGGG
GGGGGCGAGCGCCTCCAAGAAGCGAAAAAAACACAAGAGCAAGGACAAGG
AGAAGAGGAGGGAAAGGACCGGCAGCGTCGCCGAGGCGAATGGGAACCTA
GGGGCAGCAGCGTCAGCTCCGGCTGAGGCGGGTGGGAGTGGGGGCGGGGG
CGGGGGCGCCGGCGCGGCAGGGCTTGGCGGGTTAAACTTGTTGGGGTCGT
ACGCGTCGTCTTCCGGGTCCGACGGCGACGGTGGTGGCGATGCGACTTGA
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