mRNA_H-canaliculatus_F_contig14572.3527.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14572.3527.1
Unique NamemRNA_H-canaliculatus_F_contig14572.3527.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14572.3527.1 vs. uniprot
Match: D8LPZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPZ2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.130e-23
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 LLRAVRNKYLWLTISLMVYTFGISGGVYDIIRNPAPFMLKQDGSIMWFHPQ 153
            LLR +RNKYLWL  SL+VYTFGISGGVYDIIRNPAPFM+KQDG IMWFHPQ
Sbjct:  237 LLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDGFIMWFHPQ 287
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14572.3527.1 vs. uniprot
Match: A0A7S2UY50_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY50_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.920e-11
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 LLRAVRNKYLWLTISLMVYTFGISGGVYDIIRNPAPFMLK-QDGSIMWFHPQV 156
            ++  +RNK LWL +SL +YT  ISG +YDIIRNPAPF +  Q G I++FHPQ 
Sbjct:  218 IINLLRNKMLWLLVSLGMYTCSISGMIYDIIRNPAPFFMNHQTGQIVFFHPQA 270
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14572.3527.1 vs. uniprot
Match: A0A836CB15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB15_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.800e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 LRAVRNKYLWLTISLMVYTFGISGGVYDIIRNPAPFMLK-QDGSIMWFHPQ 153
            LR VR+  LWL +SL+VYTF ISG ++DIIR+P PF++  Q    ++F PQ
Sbjct:  102 LRVVRSPTLWLVVSLLVYTFSISGAIFDIIRSPPPFVISAQTRKPVYFSPQ 152
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14572.3527.1 vs. uniprot
Match: A0A024G8I4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.700e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 LLRAVRNKYLWLTISLMVYTFGISGGVYDIIRNPAPFMLKQDGSIMWFHPQVR 159
            +L  +R K LW+T+SL+ Y   +SG VY IIRNPAP+ + Q G I +FHP  R
Sbjct:  231 ILSRIRRKALWMTVSLLFYGLSVSGMVYCIIRNPAPYHMTQKG-IQYFHPDGR 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14572.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPZ2_ECTSI1.130e-2386.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UY50_9STRA2.920e-1156.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CB15_9STRA6.800e-952.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024G8I4_9STRA1.700e-850.94Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14572contigH-canaliculatus_F_contig14572:229..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D8LPZ2
Preferred nameOST3
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.protein N-linked glycosylation via asparagine
EggNOG OGsKOG2603@1,KOG2603@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_001580.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.6304545-CDS-H-canaliculatus_F_contig14572:228..3931622929206.6304545-CDS-H-canaliculatus_F_contig14572:228..393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14572 229..393 +
1696845717.6674902-CDS-H-canaliculatus_F_contig14572:228..3931696845717.6674902-CDS-H-canaliculatus_F_contig14572:228..393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14572 229..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14572.3527.1prot_H-canaliculatus_F_contig14572.3527.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14572 229..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14572.3527.1

>prot_H-canaliculatus_F_contig14572.3527.1 ID=prot_H-canaliculatus_F_contig14572.3527.1|Name=mRNA_H-canaliculatus_F_contig14572.3527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
LLRAVRNKYLWLTISLMVYTFGISGGVYDIIRNPAPFMLKQDGSIMWFHP
QVRRR
back to top

mRNA from alignment at H-canaliculatus_F_contig14572:229..393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14572.3527.1 ID=mRNA_H-canaliculatus_F_contig14572.3527.1|Name=mRNA_H-canaliculatus_F_contig14572.3527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14572:229..393+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTCGAGCCGTCCGCAACAAGTACCTGTGGCTCACGATCTCGTTGAT
GGTGTACACCTTTGGGATCAGCGGAGGCGTTTATGACATCATCCGAAACC
CCGCCCCGTTCATGCTCAAGCAGGACGGATCGATCATGTGGTTTCACCCT
CAGGTACGACGCCGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14572:229..393+

>mRNA_H-canaliculatus_F_contig14572.3527.1 ID=mRNA_H-canaliculatus_F_contig14572.3527.1|Name=mRNA_H-canaliculatus_F_contig14572.3527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14572:229..393+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTCGAGCCGTCCGCAACAAGTACCTGTGGCTCACGATCTCGTTGAT
GGTGTACACCTTTGGGATCAGCGGAGGCGTTTATGACATCATCCGAAACC
CCGCCCCGTTCATGCTCAAGCAGGACGGATCGATCATGTGGTTTCACCCT
CAGGTACGACGCCGCCTCCTTCGAGCCGTCCGCAACAAGTACCTGTGGCT
CACGATCTCGTTGATGGTGTACACCTTTGGGATCAGCGGAGGCGTTTATG
ACATCATCCGAAACCCCGCCCCGTTCATGCTCAAGCAGGACGGATCGATC
ATGTGGTTTCACCCTCAGGTACGACGCCGC
back to top