mRNA_H-canaliculatus_F_contig14549.3515.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14549.3515.1
Unique NamemRNA_H-canaliculatus_F_contig14549.3515.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: D7FM30_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM30_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 8.930e-54
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 LSENFSFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            L   +  RNLE GS+EYEAVRKEVNLR A+RLLHVCS HGGVYTKFGQ++SS+NHVLPKEFTETLKVLQDRNPSV L+EVARTVRRELGAEISELFREFDEKAIAAASLAQV
Sbjct:   52 LDYKYRLRNLERGSDEYEAVRKEVNLRAAQRLLHVCSIHGGVYTKFGQYVSSMNHVLPKEFTETLKVLQDRNPSVELSEVARTVRRELGAEISELFREFDEKAIAAASLAQV 163          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A835ZCM7_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.030e-30
Identity = 71/128 (55.47%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   16 SFRNLEGGSEEYEAVRKEVNLRTAERLLH---------------------VCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            S R L+G +  YE  + EV+ R AERL                       VC  HGGVYTKFGQHI+S+NH+LP E+T TL VLQDRNPSV L EV RT+ RELG  I++LF EFD KAIAAASLAQV
Sbjct:   58 SLRGLQGDA--YEVKKAEVHQRAAERLXXXXXXXXXXXXXXXXXXXXXXKVCMKHGGVYTKFGQHIASMNHILPPEYTTTLSVLQDRNPSVPLEEVERTILRELGGSIADLFLEFDAKAIAAASLAQV 183          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A7S3XWJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWJ0_HETAK)

HSP 1 Score: 110 bits (275), Expect = 8.100e-29
Identity = 51/105 (48.57%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   22 RNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            + ++ G+ E EA + E++ + A+RLL++C  HGG+Y K GQ+++S++H+LPK +TE LKVLQDRN  +   +V R +R   G ++ E+F EF+ KAIAAASLAQV
Sbjct:    9 QGIKPGTSEEEAAKTELHEKGADRLLYICQKHGGLYVKLGQYVASMDHILPKPYTEKLKVLQDRNKPMDFEDVQRAIRNNYGKDVDEVFNEFNPKAIAAASLAQV 113          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A6A5ABW3_9STRA (ABC1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABW3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.580e-27
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   46 EYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            EY+A  +E NLRTAERLLHVC  +GGV+TK GQ ++SLNH LP E+T TL VLQDR   V   E    V RELG  + + FREF+ K IAAASLAQV
Sbjct:   72 EYKAALREYNLRTAERLLHVCKQNGGVFTKIGQQLASLNHALPVEYTSTLSVLQDRALPVSFEEAKAAVERELGGPLDKFFREFNTKPIAAASLAQV 168          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A397DBD9_9STRA (ABC1 domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DBD9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.760e-27
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   46 EYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            EY+A  +E NLRTAERLLHVC  +GGV+TK GQ ++SLNH LP E+T TL VLQDR   V   E    V RELG  + + FREF+ K IAAASLAQV
Sbjct:  260 EYKAALREYNLRTAERLLHVCKQNGGVFTKIGQQLASLNHALPVEYTSTLSVLQDRALPVSFEEAKAAVERELGGPLDKFFREFNTKPIAAASLAQV 356          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A1A8M675_9TELE (AarF domain containing kinase 1 (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8M675_9TELE)

HSP 1 Score: 108 bits (270), Expect = 5.320e-27
Identity = 52/107 (48.60%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   16 SFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            +FR++E G+EEY+AV+ +V+LR+AERL  +C ++ G + K GQH+ +L+++LP+E+T TLKVL  R P   L E+ + +R +LG E+SE+F  F+E+   AASLAQV
Sbjct:   55 AFRHVEHGTEEYQAVKSKVHLRSAERLRDLCCSNRGTFIKVGQHLGALDYLLPEEYTSTLKVLHSRAPQSSLEEIQQVIREDLGEELSEIFVSFEEEPQGAASLAQV 161          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A0G4FH32_9ALVE (ABC1 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FH32_9ALVE)

HSP 1 Score: 112 bits (279), Expect = 2.030e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 LSENFSFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            L    S RNL+  SEEY++V+K+++ R AERLL+ C  HGG+Y KFGQ++++LNHVLP+E+T TLKVL D+   +  + + R  + E G +    FREF+ + IAAASLAQV
Sbjct:  115 LDYKLSLRNLDPDSEEYKSVQKKIHQRCAERLLYCCKKHGGIYNKFGQYVATLNHVLPEEYTNTLKVLHDQALHLPWSGIRRVFKEEFGEDPETFFREFEFEPIAAASLAQV 226          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A7S1G966_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G966_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.840e-26
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   49 YEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            Y+   +  +L  + RL+ VC  HGGVYTKFGQ+ISS+NHVLPKEFT+T+ VLQD+ P + + +VA  V  ELGA ++ELF  FD + I AAS+AQV
Sbjct:   63 YQEALRAAHLEASGRLMRVCKQHGGVYTKFGQYISSMNHVLPKEFTDTMSVLQDKAPRMTMEDVAGVVETELGAPLTELFESFDAEPIGAASIAQV 158          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A0D2UBN9_CAPO3 (ABC1 family protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UBN9_CAPO3)

HSP 1 Score: 109 bits (273), Expect = 1.310e-25
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   13 FSFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            +S R LE GS +Y AVR +V+ R+A+RLL +C    G YTK GQHI+SLN+ +P+EFT TL VLQD  P   +  V  T+ REL  ++ E+F EFDE  +AAASLAQV
Sbjct:  208 WSLRGLESGSVQYRAVRSQVHQRSADRLLWLCRRLKGFYTKAGQHIASLNYAVPQEFTSTLSVLQDMAPFDSIETVRATIARELKCQLEEVFSEFDEVPVAAASLAQV 315          
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Match: A0A1A8V8V4_NOTFU (AarF domain containing kinase 1 n=9 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8V8V4_NOTFU)

HSP 1 Score: 108 bits (270), Expect = 2.240e-25
Identity = 52/107 (48.60%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   16 SFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHISSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFDEKAIAAASLAQV 336
            +FR++E G+EEY+AV+ +V+LR+AERL  +C ++ G + K GQH+ +L+++LP+E+T TLKVL  R P   L E+ + +R +LG E+SE+F  F+E+   AASLAQV
Sbjct:   55 AFRHVEHGTEEYQAVKSKVHLRSAERLRDLCCSNRGTFIKVGQHLGALDYLLPEEYTSTLKVLHSRAPQSSLEEIQQVIREDLGKELSEIFVSFEEEPQGAASLAQV 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14549.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM30_ECTSI8.930e-5485.71ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZCM7_9STRA4.030e-3055.47ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XWJ0_HETAK8.100e-2948.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A5ABW3_9STRA1.580e-2760.82ABC1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A397DBD9_9STRA3.760e-2760.82ABC1 domain-containing protein n=11 Tax=Aphanomyce... [more]
A0A1A8M675_9TELE5.320e-2748.60AarF domain containing kinase 1 (Fragment) n=2 Tax... [more]
A0A0G4FH32_9ALVE2.030e-2650.00ABC1 domain-containing protein n=1 Tax=Chromera ve... [more]
A0A7S1G966_9STRA8.840e-2655.21Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0D2UBN9_CAPO31.310e-2553.70ABC1 family protein n=1 Tax=Capsaspora owczarzaki ... [more]
A0A1A8V8V4_NOTFU2.240e-2548.60AarF domain containing kinase 1 n=9 Tax=Nothobranc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14549contigH-canaliculatus_F_contig14549:70..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue8.5e-46
Seed eggNOG ortholog2880.D7FM30
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929204.8832102-CDS-H-canaliculatus_F_contig14549:69..2901622929204.8832102-CDS-H-canaliculatus_F_contig14549:69..290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14549 70..290 +
1696845716.92-CDS-H-canaliculatus_F_contig14549:69..2901696845716.92-CDS-H-canaliculatus_F_contig14549:69..290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14549 70..290 +
1622929204.9003963-CDS-H-canaliculatus_F_contig14549:767..8821622929204.9003963-CDS-H-canaliculatus_F_contig14549:767..882Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14549 768..882 +
1696845716.933925-CDS-H-canaliculatus_F_contig14549:767..8821696845716.933925-CDS-H-canaliculatus_F_contig14549:767..882Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14549 768..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14549.3515.1prot_H-canaliculatus_F_contig14549.3515.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14549 70..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14549.3515.1

>prot_H-canaliculatus_F_contig14549.3515.1 ID=prot_H-canaliculatus_F_contig14549.3515.1|Name=mRNA_H-canaliculatus_F_contig14549.3515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
LSENFSFRNLEGGSEEYEAVRKEVNLRTAERLLHVCSTHGGVYTKFGQHI
SSLNHVLPKEFTETLKVLQDRNPSVGLNEVARTVRRELGAEISELFREFD
EKAIAAASLAQV
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mRNA from alignment at H-canaliculatus_F_contig14549:70..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14549.3515.1 ID=mRNA_H-canaliculatus_F_contig14549.3515.1|Name=mRNA_H-canaliculatus_F_contig14549.3515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=813bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14549:70..882+ (Hapterophycus canaliculatus Oshoro5f female)
CTTTCTGAAAATTTCAGCTTCCGGAACTTAGAGGGGGGCTCCGAAGAGTA CGAGGCTGTTCGAAAGGAGGTAAACCTCAGGACCGCCGAGCGACTGTTGC ACGTGTGCTCCACGCATGGAGGCGTGTACACCAAGTTCGGCCAGCACATC TCCTCCCTGAACCACGTCCTGCCGAAGGAGTTCACGGAAACGCTCAAGGT CTTGCAGGACCGAAACCCAAGGTGGGGGGGAAGAGAGACACGGGGAAGGC CGGGGCGGGGAGGGAGGGAGAGAGGGAGATTGAGAGAGAGAGAGAGAGAG GGCGAGCGACTTTTGTTTCATCCTGAGCACCTTTTTGCGTTTGCGTTGGG GTGCAAGGAAGCACCAAATTTACTTTTCTGTGGGCGGTAATCATCGCGAT GTACACGATATGGACCCATAAAAATATACGGCATAAACCAGGGGCGCGGA GAGGCCGGATCGGATCTCTGATGCGAGGAAGGCGGCGGCGGCGGCGGCAG CAGCAGCAAAAACCTGAAATAGAAAAAGTAGATACTTTTGTCCCTCCGAG CTTCGGCAATCGGCCCATTGTTGCAAGTATCTTGATCGATTTCGTTAATT CCACCCGTCGACCAGTCCCGCACGTTTGCTGTCCCCCACTGTGTTCCATG ACCCATCTACCGATGCAAATGCGGTATGGCGGTGCCGTCCACTCGCAGTG TCGGATTGAACGAGGTGGCGAGGACCGTGAGGAGGGAGCTCGGCGCCGAG ATTTCCGAGCTGTTTCGGGAGTTCGACGAGAAGGCCATCGCCGCCGCGAG TCTCGCGCAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14549:70..882+

>mRNA_H-canaliculatus_F_contig14549.3515.1 ID=mRNA_H-canaliculatus_F_contig14549.3515.1|Name=mRNA_H-canaliculatus_F_contig14549.3515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14549:70..882+ (Hapterophycus canaliculatus Oshoro5f female)
CTTTCTGAAAATTTCAGCTTCCGGAACTTAGAGGGGGGCTCCGAAGAGTA
CGAGGCTGTTCGAAAGGAGGTAAACCTCAGGACCGCCGAGCGACTGTTGC
ACGTGTGCTCCACGCATGGAGGCGTGTACACCAAGTTCGGCCAGCACATC
TCCTCCCTGAACCACGTCCTGCCGAAGGAGTTCACGGAAACGCTCAAGGT
CTTGCAGGACCGAAACCCAAGCTTTCTGAAAATTTCAGCTTCCGGAACTT
AGAGGGGGGCTCCGAAGAGTACGAGGCTGTTCGAAAGGAGGTAAACCTCA
GGACCGCCGAGCGACTGTTGCACGTGTGCTCCACGCATGGAGGCGTGTAC
ACCAAGTTCGGCCAGCACATCTCCTCCCTGAACCACGTCCTGCCGAAGGA
GTTCACGGAAACGCTCAAGGTCTTGCAGGACCGAAACCCAAGTGTCGGAT
TGAACGAGGTGGCGAGGACCGTGAGGAGGGAGCTCGGCGCCGAGATTTCC
GAGCTGTTTCGGGAGTTCGACGAGAAGGCCATCGCCGCCGCGAGTCTCGC
GCAGGTGTGTCGGATTGAACGAGGTGGCGAGGACCGTGAGGAGGGAGCTC
GGCGCCGAGATTTCCGAGCTGTTTCGGGAGTTCGACGAGAAGGCCATCGC
CGCCGCGAGTCTCGCGCAGGTG
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