mRNA_H-canaliculatus_F_contig14513.3501.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14513.3501.1
Unique NamemRNA_H-canaliculatus_F_contig14513.3501.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14513.3501.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.870e-14
Identity = 45/85 (52.94%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 GLPEAFSMSPLGGGVGELIDGDDYGGENSRRET----WGTADGLLPSARFFARMQGGSEGERPATGVQTQAEKDKFDRDVLQYLV 243
            GL E F   PL  G G   +G     E+ RR+     WGT DG  P+ RFFARMQG + GER  T V TQAEKDKFDR+V Q+LV
Sbjct:   14 GLSEVF---PLDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLV 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14513.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI7.870e-1452.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14513contigH-canaliculatus_F_contig14513:1010..2110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size737
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14513.3501.1prot_H-canaliculatus_F_contig14513.3501.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14513 1727..2110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.354854-UTR-H-canaliculatus_F_contig14513:1009..11431622929203.354854-UTR-H-canaliculatus_F_contig14513:1009..1143Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14513 1010..1143 +
1696845716.323819-UTR-H-canaliculatus_F_contig14513:1009..11431696845716.323819-UTR-H-canaliculatus_F_contig14513:1009..1143Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14513 1010..1143 +
1622929203.366391-UTR-H-canaliculatus_F_contig14513:1507..17261622929203.366391-UTR-H-canaliculatus_F_contig14513:1507..1726Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14513 1508..1726 +
1696845716.3349648-UTR-H-canaliculatus_F_contig14513:1507..17261696845716.3349648-UTR-H-canaliculatus_F_contig14513:1507..1726Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14513 1508..1726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.3779688-CDS-H-canaliculatus_F_contig14513:1726..21101622929203.3779688-CDS-H-canaliculatus_F_contig14513:1726..2110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14513 1727..2110 +
1696845716.3439486-CDS-H-canaliculatus_F_contig14513:1726..21101696845716.3439486-CDS-H-canaliculatus_F_contig14513:1726..2110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14513 1727..2110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14513.3501.1

>prot_H-canaliculatus_F_contig14513.3501.1 ID=prot_H-canaliculatus_F_contig14513.3501.1|Name=mRNA_H-canaliculatus_F_contig14513.3501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MAGVQDDTASRDDGEDDLIYRKTANHLQQYWTESKSDVNVKRTMEPHNAL
LRAVRHRLAVDSSTREAAQEDGDDRPATFGVTKSGHTVLFPNVAPTQTTR
AGPEPCAFARRGFIASEDRSPQPALDSR
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mRNA from alignment at H-canaliculatus_F_contig14513:1010..2110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14513.3501.1 ID=mRNA_H-canaliculatus_F_contig14513.3501.1|Name=mRNA_H-canaliculatus_F_contig14513.3501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14513:1010..2110+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTACCGGAAGCATTCTCGATGTCGCCATTGGGCGGTGGTGTAGGCGA
GCTTATCGACGGAGACGACTACGGAGGGGAAAACTCCCGCCGTGAGACAT
GGGGAACTGCAGACGGGCTTTTACCAAGTGCTCGGTAAGGGTTTATTCCC
CATGGAACGAGTTTTGAATATGTTTGAAGAACTCGTCCCGCAATCTTGGT
CTCGCGGCCATTTCCAAGCATCCATTATTTCGTGCCAGCCGTGGGGAACC
TGCAACCCAACCGAGATGATACGTTCGTGCGTATACCCCTACGGTCGCCT
GCTTGTCTCTATGCCCTCCTCCCCGACCCGCCTCCCTCCCAATCCCCTCG
CCTTGGCACCCCACGGGGCAAAGTCTTCGGTGCTTGCATATTGTCCCGTT
TCACCCCCCGTCGGGTCGTGTTTCTAGGTAAGTTTAGATTGTTCCCTGCA
ACGAGATTTTTTGCTCTTCTTCATTATTTCGCCATTGCTCGACGGCAGGT
TCTTCGCTAGAATGCAAGGCGGCTCGGAGGGTGAGCGCCCGGCCACTGGC
GTTCAGACACAGGCGGAAAAGGACAAGTTTGACCGCGACGTCCTTCAGTA
CCTCGTTCCCCGCGGGCACAGATTCAGCAAAGTCACCAACGGCCCGTCCA
GGTCATCGACTTCTCCGCGTTCGCAACCGAATGGAATGATGATGTTGAAA
CGGCGGAACGGGACGTAATGGCGGGGGTGCAGGACGACACGGCGTCAAGA
GATGACGGCGAGGACGACCTCATCTACCGGAAGACTGCAAACCATCTTCA
GCAGTACTGGACTGAGTCAAAAAGTGACGTGAACGTCAAGCGCACCATGG
AACCGCACAACGCTCTGCTACGCGCAGTACGACATCGGTTGGCGGTAGAT
TCGTCGACACGAGAGGCTGCGCAGGAGGATGGGGACGATAGGCCAGCGAC
TTTCGGGGTGACCAAAAGTGGGCACACTGTCCTCTTTCCGAACGTCGCCC
CCACGCAGACGACCCGGGCCGGACCGGAACCGTGTGCTTTTGCTCGTCGA
GGATTCATAGCAAGCGAGGATAGGTCACCCCAACCTGCGCTTGACAGCAG
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14513:1010..2110+

>mRNA_H-canaliculatus_F_contig14513.3501.1 ID=mRNA_H-canaliculatus_F_contig14513.3501.1|Name=mRNA_H-canaliculatus_F_contig14513.3501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14513:1010..2110+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGGGGTGCAGGACGACACGGCGTCAAGAGATGACGGCGAGGACGA
CCTCATCTACCGGAAGACTGCAAACCATCTTCAGCAGTACTGGACTGAGT
CAAAAAGTGACGTGAACGTCAAGCGCACCATGGAACCGCACAACGCTCTG
CTACGCGCAGTACGACATCGGTTGGCGGTAGATTCGTCGACACGAGAGGC
TGCGCAGGAGGATGGGGACGATAGGCCAGCGACTTTCGGGGTGACCAAAA
GTGGGCACACTGTCCTCTTTCCGAACGTCGCCCCCACGCAGACGACCCGG
GCCGGACCGGAACCGTGTGCTTTTGCTCGTCGAGGATTCATAGCAAGCGA
GGATAGGTCACCCCAACCTGCGCTTGACAGCAGAATGGCGGGGGTGCAGG
ACGACACGGCGTCAAGAGATGACGGCGAGGACGACCTCATCTACCGGAAG
ACTGCAAACCATCTTCAGCAGTACTGGACTGAGTCAAAAAGTGACGTGAA
CGTCAAGCGCACCATGGAACCGCACAACGCTCTGCTACGCGCAGTACGAC
ATCGGTTGGCGGTAGATTCGTCGACACGAGAGGCTGCGCAGGAGGATGGG
GACGATAGGCCAGCGACTTTCGGGGTGACCAAAAGTGGGCACACTGTCCT
CTTTCCGAACGTCGCCCCCACGCAGACGACCCGGGCCGGACCGGAACCGT
GTGCTTTTGCTCGTCGAGGATTCATAGCAAGCGAGGATAGGTCACCCCAA
CCTGCGCTTGACAGCAGA
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