mRNA_H-canaliculatus_F_contig14407.3444.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14407.3444.1
Unique NamemRNA_H-canaliculatus_F_contig14407.3444.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14407.3444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14407contigH-canaliculatus_F_contig14407:1423..2694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1028
Cds size1026
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.997032-CDS-H-canaliculatus_F_contig14407:1422..22641622929194.997032-CDS-H-canaliculatus_F_contig14407:1422..2264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14407 1423..2264 -
1696845712.5836656-CDS-H-canaliculatus_F_contig14407:1422..22641696845712.5836656-CDS-H-canaliculatus_F_contig14407:1422..2264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14407 1423..2264 -
1622929195.007994-CDS-H-canaliculatus_F_contig14407:2510..26941622929195.007994-CDS-H-canaliculatus_F_contig14407:2510..2694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14407 2511..2694 -
1696845712.5919898-CDS-H-canaliculatus_F_contig14407:2510..26941696845712.5919898-CDS-H-canaliculatus_F_contig14407:2510..2694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14407 2511..2694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14407.3444.1prot_H-canaliculatus_F_contig14407.3444.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14407 1423..2694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14407.3444.1

>prot_H-canaliculatus_F_contig14407.3444.1 ID=prot_H-canaliculatus_F_contig14407.3444.1|Name=mRNA_H-canaliculatus_F_contig14407.3444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=342bp
RKYGPRPPRPRQQQPQQQQQQHHPRRAQPRPPAPHGRPTPVSRSARPPLP
HSHVLPPRNASGGYPQANVVTATADGYEVAPAAASSSGGVINADGFYAPD
PVGNAAATAPTHDEYCEDGGEEEFVESSGGHVDQPAAPADGRRVTFEDYP
VDGGLSSDYERIDDGGEWNDDVERARGHHADFERYHAAALSRPFGGAGGN
YGQVFDRGYMALRPVSHSGGTKDMAKEEFGAGRAKKPGKGAETSGEDVRS
SAATTTGSAEASSSLTSDSSPPLTADAATPETGGMGGAANSLKPTVGDSG
GGMAASSPAMPPGRDGAAGQPERVGATQPQKQQPLLPPDLVP
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mRNA from alignment at H-canaliculatus_F_contig14407:1423..2694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14407.3444.1 ID=mRNA_H-canaliculatus_F_contig14407.3444.1|Name=mRNA_H-canaliculatus_F_contig14407.3444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14407:1423..2694- (Hapterophycus canaliculatus Oshoro5f female)
CGGAAGTATGGACCGCGGCCTCCTCGACCTCGGCAGCAGCAGCCGCAGCA
GCAACAGCAACAGCATCACCCGCGGCGGGCGCAGCCGCGACCGCCTGCTC
CGCATGGTCGGCCTACTCCGGTTTCTCGTTCTGCGCGTCCGCCGCTACCG
CACTCTCATGTTCTTCCGCCGCGGAATGCCTCTGGTGAGTTCAATCGTGG
TGTTGGTGGCATCTATGATTGTGGGGGGAACGCGGAGTATTTTCAGACGG
AATCTCCCCCGCCGCCAGGAATGCCACAAGGTTGGGTGCATCAGTGCCAA
CGGTGCGGTAGACTCGGACATGAGGCTGCCGACTGCGACGCAGACAGGCG
TTTTGAGGGGTACTGCTCGATTTGTGACGAATGGGGCCATCCCGCTCGTC
GTTGTCGTCTACGTCATCGTCGCGACCTAGGTGGATACCCGCAAGCGAAC
GTCGTTACCGCTACGGCGGATGGCTACGAGGTTGCCCCTGCTGCTGCCTC
TTCTTCTGGTGGGGTGATTAATGCCGACGGCTTCTACGCTCCGGATCCGG
TCGGCAACGCCGCCGCCACTGCGCCGACTCACGATGAGTATTGCGAAGAC
GGTGGCGAAGAGGAGTTTGTGGAGAGCTCTGGAGGGCATGTGGATCAGCC
GGCGGCGCCGGCGGACGGTCGGCGGGTGACGTTCGAGGACTATCCTGTCG
ACGGTGGATTATCGTCTGATTACGAGCGTATCGATGACGGTGGTGAGTGG
AACGACGACGTAGAGCGCGCGCGTGGACATCATGCGGACTTTGAGAGATA
TCACGCTGCCGCTCTGTCACGTCCCTTTGGTGGCGCCGGCGGGAACTACG
GTCAAGTCTTCGACCGAGGATATATGGCTTTGCGGCCGGTGTCTCACTCG
GGGGGCACGAAAGACATGGCAAAAGAGGAGTTTGGTGCTGGTCGTGCTAA
GAAGCCTGGAAAAGGGGCGGAAACTTCTGGTGAGGATGTGCGTTCGTCCG
CCGCCACTACCACCGGGTCGGCGGAAGCTTCGTCTTCTCTCACGAGTGAT
TCCTCTCCTCCTCTTACCGCAGATGCCGCGACGCCGGAGACTGGCGGAAT
GGGGGGGGCGGCTAACAGCCTGAAGCCGACCGTTGGCGACTCGGGGGGAG
GAATGGCAGCGTCTTCTCCGGCTATGCCGCCAGGACGTGATGGGGCCGCA
GGGCAGCCGGAGCGTGTTGGCGCCACGCAGCCGCAGAAACAGCAGCCTCT
TCTGCCACCGGACCTCGTGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14407:1423..2694-

>mRNA_H-canaliculatus_F_contig14407.3444.1 ID=mRNA_H-canaliculatus_F_contig14407.3444.1|Name=mRNA_H-canaliculatus_F_contig14407.3444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14407:1423..2694- (Hapterophycus canaliculatus Oshoro5f female)
CGGAAGTATGGACCGCGGCCTCCTCGACCTCGGCAGCAGCAGCCGCAGCA
GCAACAGCAACAGCATCACCCGCGGCGGGCGCAGCCGCGACCGCCTGCTC
CGCATGGTCGGCCTACTCCGGTTTCTCGTTCTGCGCGTCCGCCGCTACCG
CACTCTCATGTTCTTCCGCCGCGGAATGCCTCTGCGGAAGTATGGACCGC
GGCCTCCTCGACCTCGGCAGCAGCAGCCGCAGCAGCAACAGCAACAGCAT
CACCCGCGGCGGGCGCAGCCGCGACCGCCTGCTCCGCATGGTCGGCCTAC
TCCGGTTTCTCGTTCTGCGCGTCCGCCGCTACCGCACTCTCATGTTCTTC
CGCCGCGGAATGCCTCTGGTGGATACCCGCAAGCGAACGTCGTTACCGCT
ACGGCGGATGGCTACGAGGTTGCCCCTGCTGCTGCCTCTTCTTCTGGTGG
GGTGATTAATGCCGACGGCTTCTACGCTCCGGATCCGGTCGGCAACGCCG
CCGCCACTGCGCCGACTCACGATGAGTATTGCGAAGACGGTGGCGAAGAG
GAGTTTGTGGAGAGCTCTGGAGGGCATGTGGATCAGCCGGCGGCGCCGGC
GGACGGTCGGCGGGTGACGTTCGAGGACTATCCTGTCGACGGTGGATTAT
CGTCTGATTACGAGCGTATCGATGACGGTGGTGAGTGGAACGACGACGTA
GAGCGCGCGCGTGGACATCATGCGGACTTTGAGAGATATCACGCTGCCGC
TCTGTCACGTCCCTTTGGTGGCGCCGGCGGGAACTACGGTCAAGTCTTCG
ACCGAGGATATATGGCTTTGCGGCCGGTGTCTCACTCGGGGGGCACGAAA
GACATGGCAAAAGAGGAGTTTGGTGCTGGTCGTGCTAAGAAGCCTGGAAA
AGGGGCGGAAACTTCTGGTGAGGATGTGCGTTCGTCCGCCGCCACTACCA
CCGGGTCGGCGGAAGCTTCGTCTTCTCTCACGAGTGATTCCTCTCCTCCT
CTTACCGCAGATGCCGCGACGCCGGAGACTGGCGGAATGGGGGGGGCGGC
TAACAGCCTGAAGCCGACCGTTGGCGACTCGGGGGGAGGAATGGCAGCGT
CTTCTCCGGCTATGCCGCCAGGACGTGATGGGGCCGCAGGGCAGCCGGAG
CGTGTTGGCGCCACGCAGCCGCAGAAACAGCAGCCTCTTCTGCCACCGGA
CCTCGTGCCTGTGGATACCCGCAAGCGAACGTCGTTACCGCTACGGCGGA
TGGCTACGAGGTTGCCCCTGCTGCTGCCTCTTCTTCTGGTGGGGTGATTA
ATGCCGACGGCTTCTACGCTCCGGATCCGGTCGGCAACGCCGCCGCCACT
GCGCCGACTCACGATGAGTATTGCGAAGACGGTGGCGAAGAGGAGTTTGT
GGAGAGCTCTGGAGGGCATGTGGATCAGCCGGCGGCGCCGGCGGACGGTC
GGCGGGTGACGTTCGAGGACTATCCTGTCGACGGTGGATTATCGTCTGAT
TACGAGCGTATCGATGACGGTGGTGAGTGGAACGACGACGTAGAGCGCGC
GCGTGGACATCATGCGGACTTTGAGAGATATCACGCTGCCGCTCTGTCAC
GTCCCTTTGGTGGCGCCGGCGGGAACTACGGTCAAGTCTTCGACCGAGGA
TATATGGCTTTGCGGCCGGTGTCTCACTCGGGGGGCACGAAAGACATGGC
AAAAGAGGAGTTTGGTGCTGGTCGTGCTAAGAAGCCTGGAAAAGGGGCGG
AAACTTCTGGTGAGGATGTGCGTTCGTCCGCCGCCACTACCACCGGGTCG
GCGGAAGCTTCGTCTTCTCTCACGAGTGATTCCTCTCCTCCTCTTACCGC
AGATGCCGCGACGCCGGAGACTGGCGGAATGGGGGGGGCGGCTAACAGCC
TGAAGCCGACCGTTGGCGACTCGGGGGGAGGAATGGCAGCGTCTTCTCCG
GCTATGCCGCCAGGACGTGATGGGGCCGCAGGGCAGCCGGAGCGTGTTGG
CGCCACGCAGCCGCAGAAACAGCAGCCTCTTCTGCCACCGGACCTCGTGC
CT
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