mRNA_H-canaliculatus_F_contig1434.3397.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1434.3397.1
Unique NamemRNA_H-canaliculatus_F_contig1434.3397.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1434.3397.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.770e-110
Identity = 167/256 (65.23%), Postives = 195/256 (76.17%), Query Frame = 1 
Query:    1 MERTRVKNGYGLCTSPLSVSVIGQFDGSSEKRKADTREWDRRYHTDATFQGAQQRENHPVRKILHMQKCYPETVLRLNQKGSMKRNIGSASTARPVSSRWHRNPSPNNKNSAPEGLRQ--------QTARSTNGRQQDLSDDAARGQVAREYLFCRDKMAYNRAKGREAEVDGILTGTSPLEKKMPLFPAKATHQQLLGLVHRPSHPEKPAPSVPRERRWLGSNVGWEGNRGLPTPPAGRNAKDGEVLPWPSSQYP 744
            ME+ RVKNGYG  TS LS SVIG FD SSE+RKA  R W+++Y TDA FQ  Q + NHPVRK+LHMQKCYPETV RLN++G            RP+S RWHRNP+PNN N++    ++        Q  RS +G  + LS +  R +   EY FCRDKMAYNR +GREAEVDGILTGTSPL+K++PLFPAKATHQQLLGLVHRP+HP+KPAP+VPRER+WLG NVGWEGNRG+ TPPAGRNAKDGEV PWPSSQYP
Sbjct:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQG----RTHEPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQADRSADGGHE-LSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYP 251
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BLAST of mRNA_H-canaliculatus_F_contig1434.3397.1 vs. uniprot
Match: A0A7S2XVD6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVD6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.550e-12
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:  532 PLFPAKATHQQLLGLVHR--PSHPEKPAPSVPRERRWLGSNVGWEGNRGLPTPPA-GRNAKDGEVLPWPSSQY 741
            P+FP  A+HQ  L +  +     P K AP   +  RWLG  VGWE NRGLPTPP  G + KDG + PWP+++Y
Sbjct:   25 PIFPQGASHQTQLTIDKKLVGDDPRKSAPPTKQPLRWLGDGVGWENNRGLPTPPGVGADGKDGAIKPWPTTKY 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1434.3397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP9_ECTSI1.770e-11065.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVD6_9STRA1.550e-1247.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1434contigH-canaliculatus_F_contig1434:21442..23280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009320.1
Exons4
Model size907
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1434.3397.1prot_H-canaliculatus_F_contig1434.3397.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1434 21442..23141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.5439215-CDS-H-canaliculatus_F_contig1434:21441..215361622929182.5439215-CDS-H-canaliculatus_F_contig1434:21441..21536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 21442..21536 +
1696845710.3299217-CDS-H-canaliculatus_F_contig1434:21441..215361696845710.3299217-CDS-H-canaliculatus_F_contig1434:21441..21536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 21442..21536 +
1622929182.563395-CDS-H-canaliculatus_F_contig1434:22024..224051622929182.563395-CDS-H-canaliculatus_F_contig1434:22024..22405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 22025..22405 +
1696845710.339081-CDS-H-canaliculatus_F_contig1434:22024..224051696845710.339081-CDS-H-canaliculatus_F_contig1434:22024..22405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 22025..22405 +
1622929182.5809772-CDS-H-canaliculatus_F_contig1434:22587..227721622929182.5809772-CDS-H-canaliculatus_F_contig1434:22587..22772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 22588..22772 +
1696845710.3517823-CDS-H-canaliculatus_F_contig1434:22587..227721696845710.3517823-CDS-H-canaliculatus_F_contig1434:22587..22772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 22588..22772 +
1622929182.6004527-CDS-H-canaliculatus_F_contig1434:23034..231411622929182.6004527-CDS-H-canaliculatus_F_contig1434:23034..23141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 23035..23141 +
1696845710.3621697-CDS-H-canaliculatus_F_contig1434:23034..231411696845710.3621697-CDS-H-canaliculatus_F_contig1434:23034..23141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 23035..23141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.6238728-UTR-H-canaliculatus_F_contig1434:23141..232801622929182.6238728-UTR-H-canaliculatus_F_contig1434:23141..23280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1434 23142..23280 +
1696845710.3750513-UTR-H-canaliculatus_F_contig1434:23141..232801696845710.3750513-UTR-H-canaliculatus_F_contig1434:23141..23280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1434 23142..23280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1434.3397.1

>prot_H-canaliculatus_F_contig1434.3397.1 ID=prot_H-canaliculatus_F_contig1434.3397.1|Name=mRNA_H-canaliculatus_F_contig1434.3397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
MERTRVKNGYGLCTSPLSVSVIGQFDGSSEKRKADTREWDRRYHTDATFQ
GAQQRENHPVRKILHMQKCYPETVLRLNQKGSMKRNIGSASTARPVSSRW
HRNPSPNNKNSAPEGLRQQTARSTNGRQQDLSDDAARGQVAREYLFCRDK
MAYNRAKGREAEVDGILTGTSPLEKKMPLFPAKATHQQLLGLVHRPSHPE
KPAPSVPRERRWLGSNVGWEGNRGLPTPPAGRNAKDGEVLPWPSSQYPSF
GSDPQ*
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mRNA from alignment at H-canaliculatus_F_contig1434:21442..23280+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1434.3397.1 ID=mRNA_H-canaliculatus_F_contig1434.3397.1|Name=mRNA_H-canaliculatus_F_contig1434.3397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:21442..23280+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAAGAACGCGCGTCAAAAATGGTTATGGGCTATGTACATCCCCTCT
CAGTGTTTCGGTTATCGGCCAGTTCGATGGCAGTTCCGAGAAAAGGTGCC
CAAAACCCAAAACGTCTGTAATGGAATGATGAAAGAAAAAAGGTGTCTAG
ACTACGGCAGTACTGCTGTACATACATTTCTGTTGTTGTGTTGTTCTATA
AACCCAAATGCCCCGTCAGGCACGTGCCGACAAAAAATAAGATTGGCATT
TCCGTAGTCTCGAGGAAGGTTTCCCATCGTATACAGCAATTCCACACTAC
AGTTTAGGAATGTCCCCCATTTGTGAAAGATGGGAGCGCATAACAGTCTC
GCAGTATTTTGATCGGCAGAAAGATCCACGTGCCGCCCTTGAACGCTTGT
TCGAGCATGATGCTTACGGCAGCAGCAAGTACAAATGAATGCTCTCTAAA
TCTCGCAAGGTGGCCACAAGGCAAGAACACGTGATTCCGAGACGAGCTTC
GCCAACCTTTTTCCGACAAAGAGCGGACTCGAAGCGTTGTAGCTGGACGT
TGTTGTTGGTGTCGCTCGCACAACGAATCGCAGAAAGGCGGACACGCGGG
AGTGGGACCGCCGCTACCACACGGACGCCACCTTTCAGGGAGCGCAGCAA
CGGGAAAATCACCCCGTGCGGAAGATTTTGCACATGCAGAAATGTTACCC
GGAGACGGTGCTTCGCCTGAACCAGAAAGGCTCCATGAAAAGAAACATTG
GGTCCGCATCGACCGCCCGCCCCGTCAGCAGCAGATGGCACCGAAATCCA
TCTCCCAACAACAAAAACTCCGCCCCCGAAGGATTGCGTCAGCAGACAGC
TCGCAGCACCAACGGCAGGCAACAGGACTTGTCCGATGATGCGGCGCGAG
GACAGGTGGCACGCGAGTACTTATTCTGCCGCGATAAAATGGCATACAAT
CGAGCCAAAGGGAGGTACGAAACACATAGGCCAGCAACTGCTACCCCTGC
TTTGCCTCTTGACCTCGTCGGAACCGTTAGGCAACGCGCGCAAGGCGATC
TCTTACCTTCGTGAGCGGGCTAGTGTGCAATCCATATCATAAGATTTACG
GTCTATTGCCATTTGGTCCATGTATCGTGCGGTGAATTCAATCTAGGGAA
GCGGAAGTCGACGGTATCCTCACAGGAACGTCGCCCCTCGAGAAAAAAAT
GCCATTGTTTCCGGCGAAGGCAACGCATCAGCAGCTTCTCGGGCTGGTCC
ATCGACCAAGCCACCCGGAGAAGCCAGCGCCCTCAGTACCACGAGAGAGA
AGGTGGCTCGGAAGCAACGTCGGATGGGAAGGTGAGAGAAAAAACTTGAT
TTTGCCGTGGCACAATAGCAAGTGCCGCTCAGGCAGGTGCTGAATAAATA
AGTGGGAATCTATCTCGTGGTGAGTGTATCCATCGCCGACGTCAACGACG
AAACTGCTGTTGAAAACTCTTGACGACAATGATGTTCGTGGAAAATGGCC
ACTGTTGCAGTGTTTACCCACGTCCTGCTCTGCCCGCCACACCTACCCTT
GCAACCCTCGAACCGGGCGTGAACTCTGGCCACCACGCAACAGGGAACCG
GGGGCTCCCCACCCCGCCAGCCGGCCGAAACGCGAAGGACGGAGAGGTGC
TGCCGTGGCCTTCGTCGCAGTACCCCTCATTCGGCTCGGATCCGCAGTAG
CAATCAGTCCATGATTGATCACCGCGATCGAGCTCCTAGGTAGCTGCCTC
GAGCGCTTATTTTCTGTTTGATTTCACGAGAAAGAAACGAAGCTACGAAG
TAGGCACAACTCCAGTTTAGATACAAAAGAGGGTTGTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1434:21442..23280+

>mRNA_H-canaliculatus_F_contig1434.3397.1 ID=mRNA_H-canaliculatus_F_contig1434.3397.1|Name=mRNA_H-canaliculatus_F_contig1434.3397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:21442..23280+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAAGAACGCGCGTCAAAAATGGTTATGGGCTATGTACATCCCCTCT
CAGTGTTTCGGTTATCGGCCAGTTCGATGGCAGTTCCGAGAAAAGATGGA
AAGAACGCGCGTCAAAAATGGTTATGGGCTATGTACATCCCCTCTCAGTG
TTTCGGTTATCGGCCAGTTCGATGGCAGTTCCGAGAAAAGAAAGGCGGAC
ACGCGGGAGTGGGACCGCCGCTACCACACGGACGCCACCTTTCAGGGAGC
GCAGCAACGGGAAAATCACCCCGTGCGGAAGATTTTGCACATGCAGAAAT
GTTACCCGGAGACGGTGCTTCGCCTGAACCAGAAAGGCTCCATGAAAAGA
AACATTGGGTCCGCATCGACCGCCCGCCCCGTCAGCAGCAGATGGCACCG
AAATCCATCTCCCAACAACAAAAACTCCGCCCCCGAAGGATTGCGTCAGC
AGACAGCTCGCAGCACCAACGGCAGGCAACAGGACTTGTCCGATGATGCG
GCGCGAGGACAGGTGGCACGCGAGTACTTATTCTGCCGCGATAAAATGGC
ATACAATCGAGCCAAAGGGAGAAAGGCGGACACGCGGGAGTGGGACCGCC
GCTACCACACGGACGCCACCTTTCAGGGAGCGCAGCAACGGGAAAATCAC
CCCGTGCGGAAGATTTTGCACATGCAGAAATGTTACCCGGAGACGGTGCT
TCGCCTGAACCAGAAAGGCTCCATGAAAAGAAACATTGGGTCCGCATCGA
CCGCCCGCCCCGTCAGCAGCAGATGGCACCGAAATCCATCTCCCAACAAC
AAAAACTCCGCCCCCGAAGGATTGCGTCAGCAGACAGCTCGCAGCACCAA
CGGCAGGCAACAGGACTTGTCCGATGATGCGGCGCGAGGACAGGTGGCAC
GCGAGTACTTATTCTGCCGCGATAAAATGGCATACAATCGAGCCAAAGGG
AGGGAAGCGGAAGTCGACGGTATCCTCACAGGAACGTCGCCCCTCGAGAA
AAAAATGCCATTGTTTCCGGCGAAGGCAACGCATCAGCAGCTTCTCGGGC
TGGTCCATCGACCAAGCCACCCGGAGAAGCCAGCGCCCTCAGTACCACGA
GAGAGAAGGTGGCTCGGAAGCAACGTCGGATGGGAAGGGAAGCGGAAGTC
GACGGTATCCTCACAGGAACGTCGCCCCTCGAGAAAAAAATGCCATTGTT
TCCGGCGAAGGCAACGCATCAGCAGCTTCTCGGGCTGGTCCATCGACCAA
GCCACCCGGAGAAGCCAGCGCCCTCAGTACCACGAGAGAGAAGGTGGCTC
GGAAGCAACGTCGGATGGGAAGGGAACCGGGGGCTCCCCACCCCGCCAGC
CGGCCGAAACGCGAAGGACGGAGAGGTGCTGCCGTGGCCTTCGTCGCAGT
ACCCCTCATTCGGCTCGGATCCGCAGTAGGGAACCGGGGGCTCCCCACCC
CGCCAGCCGGCCGAAACGCGAAGGACGGAGAGGTGCTGCCGTGGCCTTCG
TCGCAGTACCCCTCATTCGGCTCGGATCCGCAGTAG
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