mRNA_H-canaliculatus_F_contig14294.3367.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE) HSP 1 Score: 246 bits (627), Expect = 2.410e-76 Identity = 118/135 (87.41%), Postives = 122/135 (90.37%), Query Frame = 1
Query: 172 VVPPRWPALAEEHLSRLYSNDDGCRPCTNGGRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSSCTGLTDT 576
V PRWPALAEE LSRLYSNDDG R C+NGG GSEPLSLMELCVRSICRR+GDFR+FP +LPREVVDALLGSLTQHRALS YALRAFRDCEVTSL LGECRGVRNGWVRELL TPCGR IV LDLSSCTGLTDT
Sbjct: 106 VFVPRWPALAEEQLSRLYSNDDGTRACSNGGGGSEPLSLMELCVRSICRRMGDFRKFPSYLPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLTLGECRGVRNGWVRELLQATPCGRCIVTLDLSSCTGLTDT 240
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI) HSP 1 Score: 179 bits (454), Expect = 4.690e-50 Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1
Query: 289 MELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSSCTGLTDT 576
MELCVRSICRR+G+FR+FP +LPREVVDALLGSLTQHRALS YALRAFRDCEVTSLALGECRGVRNGWVRELL TPCGR IV LDLSSCTGLTDT
Sbjct: 1 MELCVRSICRRMGNFRKFPSYLPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWVRELLQATPCGRCIVTLDLSSCTGLTDT 96
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A5N5GDC3_9ROSA (F-box/LRR-repeat protein 13-like n=6 Tax=Maleae TaxID=721813 RepID=A0A5N5GDC3_9ROSA) HSP 1 Score: 65.1 bits (157), Expect = 6.000e-9 Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1
Query: 283 SLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLS 552
SLM+LCVR IC+ + F F LPR++ ++ L L+ + FRDC + L LGEC GV + W+ + G ++ LDLS
Sbjct: 55 SLMDLCVRKICKDINKFNTFS-MLPRDISQQIINELVYSGCLTDVSFEGFRDCALQDLYLGECPGVNDSWMDVISSQ---GSSLLSLDLS 140
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A8J4VZI4_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VZI4_9ROSI) HSP 1 Score: 64.7 bits (156), Expect = 8.290e-9 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 250 CTNG-------GRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSSCTGLTDT 576
CT G GRG+ P LM+LC+R IC + + F LPR++ + L + L+ +L+AFRDC + L LGE GV + W+ + G ++ +DLS + +TDT
Sbjct: 40 CTEGPAIDIQLGRGNCP-PLMDLCIRKICEDIDRYNTFS-MLPRDISQQIFNELVYSQRLTDVSLKAFRDCAIQDLYLGEYPGVNDSWMDVISSQ---GSSLLSVDLSG-SEVTDT 149
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A2N9H528_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H528_FAGSY) HSP 1 Score: 63.2 bits (152), Expect = 1.030e-8 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 262 GRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSSCTGLTDT 576
GRG P SL++LC+R IC + + F LPR++ + L + L+ +L+AFRDC + L LGE GV + W+ + G ++ +DLS + +TDT
Sbjct: 49 GRGKCP-SLLDLCIRKICEDIDRYNTFY-MLPRDISQQIFNELVYSQHLTDVSLKAFRDCAIQDLYLGEYPGVNDSWMDVISSQ---GSSLLSVDLSG-SEVTDT 147
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A7C9EQ04_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EQ04_OPUST) HSP 1 Score: 61.6 bits (148), Expect = 1.960e-8 Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 268 GSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWV 495
G P SLM+LC+ IC+ + + +F +PR++ + L + L+ +LRAFRDC + + LGE GV + W+
Sbjct: 49 GRRPPSLMDLCIDKICQEIDKYSDFS-MIPRDITQQIFNELVYSQRLTDVSLRAFRDCALQDIYLGEYPGVDDSWM 123
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A7N2LQB8_QUELO (Uncharacterized protein n=2 Tax=Quercus TaxID=3511 RepID=A0A7N2LQB8_QUELO) HSP 1 Score: 63.5 bits (153), Expect = 2.030e-8 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 262 GRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSSCTGLTDT 576
GRG+ P LM+LC+R IC + + F LPR++ + L + L+ +L+AFRDC + L LGE GV + W+ + P ++ +DLS + +TDT
Sbjct: 49 GRGNCP-PLMDLCIRKICEDIDRYNTFST-LPRDISQQIFNELVYSQRLTDVSLKAFRDCAIQDLYLGEYPGVNDSWMDVISSQGPS---LLSVDLSG-SEVTDT 147
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: UPI0010A2FDEF (F-box/LRR-repeat protein 14-like isoform X1 n=5 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2FDEF) HSP 1 Score: 59.3 bits (142), Expect = 5.780e-7 Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1
Query: 199 AEEHLSRLY--------SNDDGCRPCTN--GGRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLS 552
++ LSR Y SN P + +G P SL++LCVR IC+ + R F +PR++ +L + + LS + +AF+DC + LGE GV + W++ + G ++ +DLS
Sbjct: 17 SQRRLSRRYFKSGSLKWSNSSFSHPSIDYHSQKGECP-SLLDLCVRKICKEIHKHRTFSS-IPRDISQQILNEMVYSQRLSSASFKAFQDCSLQDFYLGEYPGVDDSWMQIISSQ---GSSVLSVDLS 139
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A6I9QAE7_ELAGV (F-box/LRR-repeat protein 14 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QAE7_ELAGV) HSP 1 Score: 58.5 bits (140), Expect = 1.050e-6 Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 262 GRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLS 552
G+G P SLMELCV + + + F LPR++ + L + R L+ +L+AF DC + + LGE GV++ W+ + G+ ++ LD+S
Sbjct: 48 GQGKCP-SLMELCVAKVREDINKYSSFS-MLPRDISQQIFDELVESRCLTDVSLKAFHDCALQDIHLGEYPGVKDNWMGIISSQ---GQSLLSLDIS 139
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Match: A0A061G8N3_THECC (Leucine-rich repeat family protein isoform 1 n=22 Tax=Malvaceae TaxID=3629 RepID=A0A061G8N3_THECC) HSP 1 Score: 57.4 bits (137), Expect = 2.610e-6 Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 1
Query: 262 GRGSEPLSLMELCVRSICRRLGDFREFPPFLPREVVDALLGSLTQHRALSCYALRAFRDCEVTSLALGECRGVRNGWVRELLGDTPCGRFIVKLDLSS 555
G+G P SLMELC I + ++ F LPR++ + L + L+ +L+AFRDC + L LGE GV + W+ + G ++ LDLS+
Sbjct: 45 GKGKCP-SLMELCTYKIREDIDNYGSFS-MLPRDLSQQIFNELVNSQCLTDVSLKAFRDCALQDLYLGEYPGVNDNWMDVISSQ---GSSLLSLDLSA 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14294.3367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14294.3367.1 >prot_H-canaliculatus_F_contig14294.3367.1 ID=prot_H-canaliculatus_F_contig14294.3367.1|Name=mRNA_H-canaliculatus_F_contig14294.3367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp APAGGGGGGGGGGGGGGGAAAGAAAGAAGPGVCRDGGAGVGVGGGVGGGAback to top mRNA from alignment at H-canaliculatus_F_contig14294:542..2656+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14294.3367.1 ID=mRNA_H-canaliculatus_F_contig14294.3367.1|Name=mRNA_H-canaliculatus_F_contig14294.3367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2115bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14294:542..2656+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14294:542..2656+ >mRNA_H-canaliculatus_F_contig14294.3367.1 ID=mRNA_H-canaliculatus_F_contig14294.3367.1|Name=mRNA_H-canaliculatus_F_contig14294.3367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14294:542..2656+ (Hapterophycus canaliculatus Oshoro5f female)back to top |