mRNA_H-canaliculatus_F_contig14227.3324.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14227.3324.1
Unique NamemRNA_H-canaliculatus_F_contig14227.3324.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.020e-15
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +LEN+  S +E P  F +RV  L   L  AG+ KS++EV +I+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELENITMSDDEDPKLFFSRVAQLETKLRAAGIAKSEQEVVQILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.780e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWFLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.700e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:   77 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 187
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.990e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:   77 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 187
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.160e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5K2K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.310e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5JFE5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+++  S +E P  F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:   62 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWFLPSHPGDCQLLVAELDSITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 172
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.040e-14
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S   AW+M+    +P    +  LL  +L+N+  S +E P  F +RV  L   L   G+ KS++EV RI+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5K155_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K155_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.610e-14
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   31 LDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            L  +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+N+  S +E    F +RV  L   L   G+ KSD+EV +I+VRQLP
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDLKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLP 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.170e-13
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   40 RYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAPEAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNALPHAGVRKSDEEVGRIIVRQLP 363
            +Y   LV +H R +S +LE    A FE  ++ C S  EAW+M+    +P    +  LL  +L+++  S +E+P  F +RV  L   L   G+ KSD+EV +I+VRQ P
Sbjct:  152 QYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDDITMSDDENPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQYP 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14227.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L646_9PHAE2.020e-1539.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYB5_9PHAE3.780e-1538.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU47_9PHAE4.700e-1538.74CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBS7_9PHAE4.990e-1538.74CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JN41_9PHAE5.160e-1538.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2K1_9PHAE5.310e-1538.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFE5_9PHAE1.290e-1437.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LA89_9PHAE4.040e-1437.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K155_9PHAE4.610e-1437.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE1.170e-1337.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14227contigH-canaliculatus_F_contig14227:1821..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.277517-CDS-H-canaliculatus_F_contig14227:1820..21921622929172.277517-CDS-H-canaliculatus_F_contig14227:1820..2192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14227 1821..2192 -
1696845705.555327-CDS-H-canaliculatus_F_contig14227:1820..21921696845705.555327-CDS-H-canaliculatus_F_contig14227:1820..2192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14227 1821..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14227.3324.1prot_H-canaliculatus_F_contig14227.3324.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14227 1821..2192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14227.3324.1

>prot_H-canaliculatus_F_contig14227.3324.1 ID=prot_H-canaliculatus_F_contig14227.3324.1|Name=mRNA_H-canaliculatus_F_contig14227.3324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
IHGEDSERIDLDHRYDRDLVADHWRAFSILLEGISNALFEPRIHRCSSAP
EAWQMITGCIIPQTADERYLLKQQLENVRYSGEEHPYAFLARVDGLLNAL
PHAGVRKSDEEVGRIIVRQLPDKL
back to top

mRNA from alignment at H-canaliculatus_F_contig14227:1821..2192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14227.3324.1 ID=mRNA_H-canaliculatus_F_contig14227.3324.1|Name=mRNA_H-canaliculatus_F_contig14227.3324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14227:1821..2192- (Hapterophycus canaliculatus Oshoro5f female)
ATCCACGGGGAAGACAGTGAAAGGATAGACCTGGACCATCGGTACGACCG
CGACCTCGTCGCAGATCATTGGCGTGCTTTCAGCATTTTGCTGGAAGGTA
TCTCCAATGCGCTTTTTGAACCACGGATCCACCGTTGTTCATCGGCTCCG
GAGGCGTGGCAAATGATCACGGGCTGTATCATCCCTCAGACCGCGGATGA
ACGCTACCTTCTCAAACAACAGTTGGAGAATGTTCGCTACTCTGGGGAAG
AGCACCCGTACGCTTTCCTCGCACGAGTTGACGGTCTGCTAAACGCTCTT
CCTCACGCTGGTGTACGCAAGTCAGATGAGGAGGTCGGGCGCATAATCGT
TCGACAGCTCCCTGACAAGCTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14227:1821..2192-

>mRNA_H-canaliculatus_F_contig14227.3324.1 ID=mRNA_H-canaliculatus_F_contig14227.3324.1|Name=mRNA_H-canaliculatus_F_contig14227.3324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14227:1821..2192- (Hapterophycus canaliculatus Oshoro5f female)
ATCCACGGGGAAGACAGTGAAAGGATAGACCTGGACCATCGGTACGACCG
CGACCTCGTCGCAGATCATTGGCGTGCTTTCAGCATTTTGCTGGAAGGTA
TCTCCAATGCGCTTTTTGAACCACGGATCCACCGTTGTTCATCGGCTCCG
GAGGCGTGGCAAATGATCACGGGCTGTATCATCCCTCAGACCGCGGATGA
ACGCTACCTTCTCAAACAACAGTTGGAGAATGTTCGCTACTCTGGGGAAG
AGCACCCGTACGCTTTCCTCGCACGAGTTGACGGTCTGCTAAACGCTCTT
CCTCACGCTGGTGTACGCAAGTCAGATGAGGAGGTCGGGCGCATAATCGT
TCGACAGCTCCCTGACAAGCTTATCCACGGGGAAGACAGTGAAAGGATAG
ACCTGGACCATCGGTACGACCGCGACCTCGTCGCAGATCATTGGCGTGCT
TTCAGCATTTTGCTGGAAGGTATCTCCAATGCGCTTTTTGAACCACGGAT
CCACCGTTGTTCATCGGCTCCGGAGGCGTGGCAAATGATCACGGGCTGTA
TCATCCCTCAGACCGCGGATGAACGCTACCTTCTCAAACAACAGTTGGAG
AATGTTCGCTACTCTGGGGAAGAGCACCCGTACGCTTTCCTCGCACGAGT
TGACGGTCTGCTAAACGCTCTTCCTCACGCTGGTGTACGCAAGTCAGATG
AGGAGGTCGGGCGCATAATCGTTCGACAGCTCCCTGACAAGCTT
back to top