mRNA_H-canaliculatus_F_contig142.3305.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig142.3305.1
Unique NamemRNA_H-canaliculatus_F_contig142.3305.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 5.190e-100
Identity = 153/172 (88.95%), Postives = 161/172 (93.60%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGSANGAGGGKPIKKGK 516
            RTYQYWLDRSVIYT WRW +FFVSV LFLLRIY+VKGWFIVTYGLGIFLLNN+IGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEF+FWLSSQ+GLLMAFGMTFF LFDIPVFWPILLIYFIVLM LTMKRQ+KHMIKHKYVPWNWGKA YKG G++NG GGGKP K  K
Sbjct:   18 RTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTMKRQVKHMIKHKYVPWNWGKATYKG-GASNGTGGGKPFKNNK 188
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7S3K339_9STRA (Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K339_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.690e-64
Identity = 109/162 (67.28%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSD-EFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGSANG 483
            R +Q  LD S +Y   RW +FFV + ++++R   + GW+IVTYGLGIFLLNN IGFLSPQ+DPE+EGP LPTS  D EFRPFSRR+PEFKFW SS +G+L+AF MTFF  FDIPVFWPILL+Y+I L+ LTMKRQIKHMIKHKYVPW++GKAKY   G A G
Sbjct:   28 RQFQRILDISTVYVITRWLIFFVCILIYVIRTASINGWYIVTYGLGIFLLNNFIGFLSPQMDPENEGPVLPTSSDDAEFRPFSRRVPEFKFWYSSTKGVLIAFVMTFFSFFDIPVFWPILLLYWIALVFLTMKRQIKHMIKHKYVPWSYGKAKYAAPGGAGG 189
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7S2V4J3_9STRA (Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 4.420e-63
Identity = 103/158 (65.19%), Postives = 128/158 (81.01%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGS 474
            R YQ++LD+S I+T  RW  F + + ++ LR+Y+V GW+IVTYGLGIFLLNN IGFLSPQ+DP+S+GP LP+  SDEFRPF+RRLPEF+FW +  R +++AF MTFFK+FDIPVFWPILL YF VL VLTMKRQIKHMI H YVPWN GK +++   S
Sbjct:   18 RRYQHFLDKSTIHTVPRWGFFILCLGIYALRVYLVNGWYIVTYGLGIFLLNNFIGFLSPQVDPDSDGPVLPSKDSDEFRPFTRRLPEFQFWHACTRAVIIAFFMTFFKVFDIPVFWPILLFYFFVLFVLTMKRQIKHMITHGYVPWNRGKQRFQSKNS 175
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 4.680e-63
Identity = 106/158 (67.09%), Postives = 123/158 (77.85%), Query Frame = 1 
Query:    4 TYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGSA 477
            T Q WLD S  Y T RW  F V ++L++LR+Y+V GWFI+TYGLGI LLNN IGFLSPQ+DPESEG  LPT  SDE RPF RRLPEFKFWL+S R + ++F MTFF++FDIPVFWPILL+YF  L   TMKRQI HMIKHKYVPW WGK +Y G  +A
Sbjct:   26 TTQQWLDWSTPYVTARWIFFVVLLSLYMLRVYLVNGWFIITYGLGIHLLNNFIGFLSPQMDPESEGATLPTFESDEPRPFRRRLPEFKFWLASARAVCLSFFMTFFQIFDIPVFWPILLLYFFALFFFTMKRQIMHMIKHKYVPWTWGKRRYTGKSAA 183
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.570e-62
Identity = 116/197 (58.88%), Postives = 136/197 (69.04%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQR------------------------------------------GLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKG 465
            RTYQ+WLDRSVIY T RW  F V + ++LLR+Y+++GWFIVTYGLGIFLLNN IGFLSPQ+DPE +GPGLPT+ +DEFRPF+RRLPEF+FW SS R                                          G+L A  MT F LFD+PVFWPILL+YF+VL  LTMKRQIKHMIKH+YVPWNWGKAKY+G
Sbjct:   22 RTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQVDPEMDGPGLPTASTDEFRPFTRRLPEFQFWHSSTRDAAXXXXXXXXXXXXXXXXXXXSFRXXXXXXXXXXXXXXXXRGVLTALVMTHFSLFDVPVFWPILLVYFVVLFFLTMKRQIKHMIKHRYVPWNWGKAKYRG 218
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.870e-61
Identity = 108/160 (67.50%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESE---GPGLPTSGSD--EFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKG 465
            RTYQ++LD+S IYT  RW  FF  +AL+LLRIYVV G+F+VTY LGIFLLNN+IGFL+PQ+DPE++   G GLPT+ +D  EFRPF RRLPEF+FW S  +GL+  F MTFF +FD+PVFWPILLIYFIVL  LTMKRQI+HMIK+KYVP++WGK K+ G
Sbjct:   20 RTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQLDPEADRGDGLGLPTTNNDVDEFRPFERRLPEFQFWYSCIKGLVYCFMMTFFSVFDVPVFWPILLIYFIVLFSLTMKRQIQHMIKYKYVPFSWGKPKHTG 179
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7S2FFP1_9STRA (Protein RER1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FFP1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 8.170e-61
Identity = 99/157 (63.06%), Postives = 126/157 (80.25%), Query Frame = 1 
Query:    7 YQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGSA 477
            +Q  LDRS  +   RW  F   + ++ LR+Y+V GW+I+TYGLGI+LLNN+IGFLSPQ+DP+SEGP LPT  S+EFRPFSRRLPEFKFW +S R + ++F +TFF++FDIPVFWPILL+YFI L +LTMKRQIKHM+KH YVPW  GK ++ G G+A
Sbjct:   20 FQMLLDRSTPHIVGRWIAFVFLMGIYTLRVYLVNGWYIITYGLGIYLLNNLIGFLSPQVDPDSEGPCLPTRDSEEFRPFSRRLPEFKFWYASARAVCVSFFLTFFQIFDIPVFWPILLLYFIALFILTMKRQIKHMMKHNYVPWASGKKRFTGGGAA 176
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A0G4H715_VITBC (Protein RER1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H715_VITBC)

HSP 1 Score: 206 bits (525), Expect = 1.370e-59
Identity = 97/156 (62.18%), Postives = 128/156 (82.05%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGS 468
            R Y  ++DR+  Y   RW  FF  VALF+LRIY+ +G++IVTYGLGI+LLN +IGFLSPQ+DPE+EGP LP   ++E+RPF RRLPEFK W S+ R ++++  MTFF++FD+PVFWPILL+YF+VL VLTMK+QI+HMIK++YVPW+WGKA+Y  S
Sbjct:   21 RIYSSYIDRTATYIKGRWLFFFAMVALFVLRIYLTQGFYIVTYGLGIYLLNLLIGFLSPQVDPETEGPVLPVRDAEEYRPFQRRLPEFKCWQSATRAVVISITMTFFRMFDLPVFWPILLMYFLVLFVLTMKQQIRHMIKYRYVPWSWGKARYASS 176
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BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A4D9D3D2_9STRA (Protein RER1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3D2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.740e-59
Identity = 96/157 (61.15%), Postives = 125/157 (79.62%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSG 471
            R +Q+ LD+S ++   RW +F   + L+ LR++ + GWFIVTYGLGI+LLNN IGFLSPQ+DPESEGP LPT  S+E+RPF+RRLPEFKFW    +   +AF MTFF+ FD+PV+WPILL+YF+ L +LTMKRQI+HMIKH+YVPW+  KA+Y G+G
Sbjct:   19 RKWQHILDQSTVHVGLRWVIFAAMLTLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAG 175
[Close]
BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Match: A0A7S0ITX5_9EUKA (Protein RER1 n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0ITX5_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 4.280e-59
Identity = 101/164 (61.59%), Postives = 131/164 (79.88%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTTWRWAVFFVSVALFLLRIYVVKGWFIVTYGLGIFLLNNVIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFKFWLSSQRGLLMAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWGKAKYKGSGSA-NGAG 489
            R +Q+WLD S  +T  RWA+    V ++ +R+Y++ GW+I+TYGLGI++LN +IGFLSPQ+DPE+EGP LPTS  D+FRPF RRLPEFKFW S  +  ++AF +TFF +F+IPVFWPILL+YFI L VLTMKRQIKHMIK KYVP+++GK KY+G   A NG+G
Sbjct:   21 RKWQHWLDLSAPHTGARWALSAFIVLIYCIRVYLINGWYIITYGLGIYVLNLLIGFLSPQVDPETEGPILPTSKDDDFRPFIRRLPEFKFWYSLTKAFVIAFTLTFFNVFNIPVFWPILLMYFIALFVLTMKRQIKHMIKFKYVPFSFGKTKYRGKDEASNGSG 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig142.3305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI5.190e-10088.95Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S3K339_9STRA1.690e-6467.28Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7S2V4J3_9STRA4.420e-6365.19Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A7S2W0T1_9STRA4.680e-6367.09Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A835YJT4_9STRA2.570e-6258.88Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A7R9YCX7_9STRA6.870e-6167.50Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A7S2FFP1_9STRA8.170e-6163.06Protein RER1 n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A0G4H715_VITBC1.370e-5962.18Protein RER1 n=1 Tax=Vitrella brassicaformis (stra... [more]
A0A4D9D3D2_9STRA1.740e-5961.15Protein RER1 n=1 Tax=Nannochloropsis salina CCMP17... [more]
A0A7S0ITX5_9EUKA4.280e-5961.59Protein RER1 n=2 Tax=Coccolithales TaxID=418917 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig142contigH-canaliculatus_F_contig142:20669..24890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D8LB85
Preferred nameRER1
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsCOG5249@1,KOG1688@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons4
Model size1886
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig142.3305.1prot_H-canaliculatus_F_contig142.3305.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig142 22774..23523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.924771-UTR-H-canaliculatus_F_contig142:20668..208481622929168.924771-UTR-H-canaliculatus_F_contig142:20668..20848Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 20669..20848 +
1696845703.7564912-UTR-H-canaliculatus_F_contig142:20668..208481696845703.7564912-UTR-H-canaliculatus_F_contig142:20668..20848Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 20669..20848 +
1622929168.9392312-UTR-H-canaliculatus_F_contig142:21597..216531622929168.9392312-UTR-H-canaliculatus_F_contig142:21597..21653Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 21598..21653 +
1696845703.7690635-UTR-H-canaliculatus_F_contig142:21597..216531696845703.7690635-UTR-H-canaliculatus_F_contig142:21597..21653Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 21598..21653 +
1622929168.949755-UTR-H-canaliculatus_F_contig142:22712..227731622929168.949755-UTR-H-canaliculatus_F_contig142:22712..22773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 22713..22773 +
1696845703.7789016-UTR-H-canaliculatus_F_contig142:22712..227731696845703.7789016-UTR-H-canaliculatus_F_contig142:22712..22773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 22713..22773 +
1622929168.9957397-UTR-H-canaliculatus_F_contig142:23523..248901622929168.9957397-UTR-H-canaliculatus_F_contig142:23523..24890Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 23524..24890 +
1696845703.8081381-UTR-H-canaliculatus_F_contig142:23523..248901696845703.8081381-UTR-H-canaliculatus_F_contig142:23523..24890Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig142 23524..24890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.9691682-CDS-H-canaliculatus_F_contig142:22773..228571622929168.9691682-CDS-H-canaliculatus_F_contig142:22773..22857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig142 22774..22857 +
1696845703.7888887-CDS-H-canaliculatus_F_contig142:22773..228571696845703.7888887-CDS-H-canaliculatus_F_contig142:22773..22857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig142 22774..22857 +
1622929168.9813912-CDS-H-canaliculatus_F_contig142:23385..235231622929168.9813912-CDS-H-canaliculatus_F_contig142:23385..23523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig142 23386..23523 +
1696845703.798295-CDS-H-canaliculatus_F_contig142:23385..235231696845703.798295-CDS-H-canaliculatus_F_contig142:23385..23523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig142 23386..23523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig142.3305.1

>prot_H-canaliculatus_F_contig142.3305.1 ID=prot_H-canaliculatus_F_contig142.3305.1|Name=mRNA_H-canaliculatus_F_contig142.3305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
MAFGMTFFKLFDIPVFWPILLIYFIVLMVLTMKRQIKHMIKHKYVPWNWG
KAKYKGSGSANGAGGGKPIKKGK*
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mRNA from alignment at H-canaliculatus_F_contig142:20669..24890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig142.3305.1 ID=mRNA_H-canaliculatus_F_contig142.3305.1|Name=mRNA_H-canaliculatus_F_contig142.3305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig142:20669..24890+ (Hapterophycus canaliculatus Oshoro5f female)
AGGACATACCAATACTGGTTAGATCGATCAGTGATTTACACCACTTGGAG
ATGGGCGGTGTTTTTTGTGTCGGTGGCTCTGTTCCTGTTGAGGATCTACG
TGGTGAAGGGGTGGTTCATCGTCACGTACGGGCTGGGGATCTTCCTCCTC
AACAACGTCATCGGGTTCTTGTCGCCACAGGTGTGTTGCTTTTTCGTGTG
AGTATGTTGCCGTGCGGGAGGCGCCGGTATTCCAGAAGCTGTCACAAGCA
CGTCGACCTGGCGCTCTTGGTCCATCGTTTGTGGGCAAAGAGCTTTGGAT
TTCCGTTAATTACGTCATTTTTTGTCGCACATGCTCTTTCAGCCGCATGT
CCTGCCCTTTGGCCAACGGAAATGTTGAGCTCGTGCTTGATCCCATCCCA
TCCTCAAGTCTCATGGAAGCAACGTGTCTGCAGCACGCGTGATTGGCCAA
CGAGACCTCGTCGAATGTTGTAGAAGACTATTTCGAAGCCCAAGTTCCAG
CTGGAGTTCATTTTTCCATAAGCGAAAACCTACTCGATGGTAGAAGGCCT
GAGTCCTACTTGATGGGGTAAACACCCGTCCTCAAAAGCTGCATCCTTGC
GACTGTAAGCACCTGGTGGTGAACGACTGTAAGCACCTGGGGGTGGCAGG
GTGAACGAGGTCGGGGGTTGTGAGGAAGAGATGGCTTGAGGAACAGTACA
GGAATCGGTGTGGCGAAGAGGCCAGCACTATTTCGTCGTCCGAGATTTAT
CAGGATTGTTGCCAGGTAGCACCTAACCCGAGTGGACTGTAGCTCCTGGA
TTCATAACAACTGGTTCCGCGACGAGAGGTAAAACTCTGTCGATTGCGCA
CACAGCAATATTTTTGTCTTTCCTGAGTCATCGCTCCTGACTCCTCTCCC
CCCCGTCCCTCGACCGAATCCCACGGAAGATCGACCCGGAGTCTGAGGGG
CCCGGACTTCCAACTTCAGGATCAGATGAGTTCAGGTATGATATGACCAG
CTCAGGATCGCACGAAAGCATGTTTAAAGTTGGTTGGTGGTCGGCATCAC
GGGTTTTCGAGTTTTCGCTGGTGTCGCATTCCGTAGGCACGTGCGACCCA
TGCTGGAAACAGTGCTACCAGCCTGTCCCCCGCAAGAAGCACCGGTTCTA
CCTCCATGGCGTATCGTTGTGGTGTATGTCTACGCTCAAAACGCTCATGT
GTTCGCTTCGTACGACGCGATCCAAACCACCTGTACGGTATCCTGGGCGT
GCCGTGTGGCGTGTGCACACCGCCACGAAGTTAAAATGTGTTCGCGTGCG
CGCTTCGGAAGGGGGTTGAACGCTGGTGTTGCCTTGGGCGACTGGTCGGA
CAGCGGTGGCGGCCGTGCGTGATTCAGTCGCGGTTTGTTGCGTGTCGGAC
CTGTCGCTTTCGAGTAGTTTACACTGTTGCAGTTTGTCCCCTCTTTTGTC
TCCTCTTTCTTTTGGCGGTCGTCGGTGTTCGCAGCTGATCATGTCGCGGA
GATCCATCGACATCGCCAAAAACGGTGGTATTGCCATGAGTGCAAAAAAA
AATGAGGTACTTTAAGTGCCCCGTTCTCGATCGAATGCAGCGGTATTATG
TCCACCGCCCGGCGTTCTTCTCACGCCGATTCCCCCGCCGACGTCGGGGA
AGAATCCTGGACGGTTGGCTGACGCACCCATATATCTCGGAGGACATCGC
CGTGACGGCTGCACGCCCTCGATATGTTTTCACGCGTCTGTTTGGTCGTT
TTCCATTTATGTTATCTCTAATCCCGCCAAACATTTGCGTGGTGTTGCCA
CACGCGTGCGATCACGGCTTGTACCCTAATGATGCGAAGCCAAGCAATCG
CTTTTGTCGATCTACATAACGTCTTGCGAAGGCCCCCCTGAGGCGAATAC
GATGGCATCGCCTCGCGTCTTGGCACTGAGGAGAGCGGTTGCGGCCCTCC
GCATCCCCACGAAGACAGTACCAAAAACGTAGTCCTCCAGACAGAGGGTG
TCACCTTGTTGCTTCGCTTTGTTCTACCTTTACCCCCATTCCAGGCCATT
CAGCCGACGCCTGCCGGAGTTCAAGTTTTGGTTGTCTTCGCAAAGGGGGT
TGCTCATGGCGTTCGGTATGACTTTCTTCAAACTTTTCGACATCCCGGTC
TTCTGGCCGATTCTCCTAATCTACTTCATAGTGCTCATGGTGAGTGAGAG
AGCGGGGGGGGGGGAGGGTGCTTCCTGGCAGTGTTTGCTGGTGGTTTTGC
TCGTACGGAATTTCGAAGGTTCGATCGGTGCGACTTTGCCGTCTGACAGC
GGTAAACTCCGAGTAAAATACACGGGAACGTGCCGACGTCCTACACATGT
ACAGGACGGGTGCTCGCTGCGTACCTGCACATTCACACATGCGCACCTGT
TTACGACCCGGGCCCCGAATACGCATACGTGTGGTGGCGGCATCCTTTTG
TTTTGTGTTACGCTTTGCTAGGTGTGTGTGCTCTCTGCGCACCGCGGAGG
CGCGCGTTTACCGGCATATAGGCTTTCTTCGGCGCGTGTGATGTGAAATC
TTCCAATCTCAACTGACTTCGGGAGAGCGTATGGTACATGTTTCTGCCGC
GCCCTCGCTGCCGCTGCCGCCGCCCGCGGCGGGAAAATGAGTGTCTGCCC
AACCCCGCGTCCGCATTTGTTACATCATCACTTCCCCACCTCACCGGCCC
GTCTACGTCCTCCGAAGGTCTTGACAATGAAGCGACAAATCAAGCACATG
ATAAAGCACAAGTATGTACCGTGGAACTGGGGGAAGGCCAAATACAAAGG
CTCTGGCTCCGCGAACGGGGCAGGGGGCGGGAAACCGATCAAGAAGGGCA
AGTGATATTGTAACAGGGGGCGTCATCGGTGCTTCGGCGGGGCAGGCGGA
GAGGGAGGGCACATTGGCCTTGGTGTGGTGTTGTATTGCAGGATCATGAT
GCACTAGTTTTTTTGTTTTGGCAGGGATGTCGCGGGAATCCTTCGTAAGG
AGTTGTGGAGAAAGGGTGTGCTTTCCTTGCCCCTCCGTTGTGTGCTGCCC
TGTAGAATTTCCGAACATTTCAGTCTCATCGCGAGCGGCGCTTCGACATT
TTTGGTGTCGCGGCATTTTCCCCTGGGCCTGGGTGGTCATGAGCCCCGGT
TTTCCGCTGCAGTTGTGGTAAGGAAGAAATGGCGACAGAGAAAGGGCGGT
GCGCTTTCGATCATGCACCCTTCGCACACGCTCACGGCCTGTCGTGGTTC
ACTCCGCCTGCGGTTGTCGTCCAAAGCTCTGACCGAACTTACTAACATTT
CGCCGAGCAGGCAATTCAGGAGATTAAGCAGGGGGGGGGGGGGCTAGCGA
CTTCACCACATTTTAGATCACTCTGTGGTGTCGGCGAATGATTGGCAGGT
GCACCGCGTATCCCAACGAATGAAATCGAAAGAAAGAAACGGTCATACTC
GGTAGGTTGGTGAGCACAAGGCGAAAACCGTTGTCACGTAAAAGGTCTGG
GCGCAAGACCTCTCGGGCGCGGTGTGCGTGTGCTCTAAGGTTAAGGTCTA
GAGCCCCCGCTGATTTCACTTGTTTCAGCCACGAAGGATATACTAGTTGT
AGTGGCATGGAGAGAAGGAGCCCGGGCAGGAACCGAAAGCTCGTATGTCG
CTAGATCTGTTTGATTGTGTGATCGTTCACCGCGAACAACCCTTGTTTTT
GCGGGTGAAACTCTCTTCCAGCCGGCGTTGGTTGGTTGAAACCATCCACG
TGTACTCGAACCTAGCAAACTGACCAACTTTAGCAGTAGTGAGTGGCTGA
TCGCCGTTACCTTGCTGATACAACATGCAGCAGCTAGATGGCGTTGTTGT
ACGACCGGTAGGCGGTTTGGAGTTGCTTGATCGTAGAAGGGTGCATTCAT
TCAAATCGTGCTTGTACACGATGCCGCAGTCTGGTGCAGACACCCTTCGG
TTGCCCCGCCTCGTAAGTGTTCACCAGTCGGAGTCACATCGGGGATTCAG
CGAAGGTCGTTACGGATTATTGTTCCAAACCGTTGCTGCCAAAATTCGTT
GGGGCAATCGGGGTGCTTCCTACGGTTGCTTTCACCGCCTGTAGGGTCGG
CGGAGTTGCGCGCGGGAATGGCAATACGTCCCGTTCACCGTTGCGTGGAT
TGGCCGCTGGCTGGAAAGTGTGACGTACCCACAATGGCTGGAAAACGATT
CAATCACACATTTGGACAAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig142:20669..24890+

>mRNA_H-canaliculatus_F_contig142.3305.1 ID=mRNA_H-canaliculatus_F_contig142.3305.1|Name=mRNA_H-canaliculatus_F_contig142.3305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig142:20669..24890+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTTCGGTATGACTTTCTTCAAACTTTTCGACATCCCGGTCTTCTG
GCCGATTCTCCTAATCTACTTCATAGTGCTCATGATGGCGTTCGGTATGA
CTTTCTTCAAACTTTTCGACATCCCGGTCTTCTGGCCGATTCTCCTAATC
TACTTCATAGTGCTCATGGTCTTGACAATGAAGCGACAAATCAAGCACAT
GATAAAGCACAAGTATGTACCGTGGAACTGGGGGAAGGCCAAATACAAAG
GCTCTGGCTCCGCGAACGGGGCAGGGGGCGGGAAACCGATCAAGAAGGGC
AAGTGAGTCTTGACAATGAAGCGACAAATCAAGCACATGATAAAGCACAA
GTATGTACCGTGGAACTGGGGGAAGGCCAAATACAAAGGCTCTGGCTCCG
CGAACGGGGCAGGGGGCGGGAAACCGATCAAGAAGGGCAAGTGA
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