mRNA_H-canaliculatus_F_contig1416.3277.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1416.3277.1
Unique NamemRNA_H-canaliculatus_F_contig1416.3277.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: D8LG57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG57_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.000e-35
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 AMVLPLTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLAAGG 219
            AM LP  TPSPGINYNFV G+YLVCSLIL VL+ LDK LHVEAVEG+WVVFAPFLPCLAWAL +RSKWLA GG
Sbjct:   14 AMALPFMTPSPGINYNFVAGSYLVCSLILVVLLALDKFLHVEAVEGSWVVFAPFLPCLAWALVIRSKWLATGG 86
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A7S2RHB9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.300e-18
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   25 PSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLAA 213
            P+ GINYNFV+G Y + SL+  VL  LDK   V  VEG W++FAPFLPCL WAL +R+KWL A
Sbjct:   63 PTDGINYNFVSGMYALASLLFMVLYGLDKVAKVPQVEGFWLIFAPFLPCLVWALFVRAKWLRA 125
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A6G0WX27_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX27_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.770e-14
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   25 PSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLA 210
            P+  INYNFV+G Y  CSLI  +L  L  H + + VEG ++VFAPF+PCL W+L +R  WLA
Sbjct:    7 PAETINYNFVSGVYAACSLIFVIL--LIAHQYTDQVEGFYIVFAPFVPCLLWSLVVRKNWLA 66
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A485LTT7_9STRA (Aste57867_25328 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTT7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.860e-13
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   25 PSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWL 207
            P   INYNFV+G Y  C+ +   L+ L  H + +AVEG ++VFAPF+PCL W+L +R  WL
Sbjct:    7 PVETINYNFVSGVYAACTALF--LILLAGHHYTDAVEGFYIVFAPFIPCLLWSLVVRQNWL 65
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: W4H014_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H014_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.880e-12
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   16 LTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLA 210
            + +P   INYNFV G Y +C+++  +L+ + ++   ++VEG ++VFAPFLPCL W+L +R  WLA
Sbjct:    4 ILSPVDTINYNFVAGVYGLCTVLFVLLLVIQRY--TDSVEGFYIVFAPFLPCLLWSLVVRRNWLA 66
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A8K1CIP0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIP0_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-12
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   16 LTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWL 207
            L TPSP INYNFV G Y  C+++   L  L ++   +AVEG ++V APF+PC  W+  +R +WL
Sbjct:    3 LLTPSPSINYNFVAGVYAFCAVLSVFLWVLQQY--TDAVEGFYIVLAPFIPCFVWSWLVRQRWL 64
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A024U344_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U344_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.610e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   22 TPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLA 210
            +P   INYNFV+G Y +C++I   L+ + ++   +AVEG ++VFAPF+PCL W+L +R  WLA
Sbjct:    6 SPVDSINYNFVSGVYGLCTVIFLGLLVIQRY--TDAVEGFYIVFAPFVPCLLWSLVVRRNWLA 66
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A484E7D4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7D4_BRELC)

HSP 1 Score: 64.7 bits (156), Expect = 7.810e-12
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   22 TPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWL 207
            TPSP INY+FVTG YL C+++  +L  +  H +   VEG ++V  PF+PC  W++ +R  WL
Sbjct:    5 TPSPAINYSFVTGVYLFCTVLCAILSIM--HHYTPQVEGFYIVLVPFVPCFFWSVVVRHNWL 64
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A1V9ZEU9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEU9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.880e-11
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    4 MVLPLTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWLAA 213
            M   L  P+  INY+FV G Y   +L+L VL  L   L+ +AVEG ++V APF PC  W+L +R  WLAA
Sbjct:    1 MAFNLFAPAEAINYDFVAGMYGFFTLLLVVLYVLQ--LYTDAVEGFYIVMAPFAPCFIWSLIVRRNWLAA 68
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BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Match: A0A067BS30_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BS30_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 2.530e-9
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 MVLPLTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVFAPFLPCLAWALGMRSKWL 207
            M   L  P+  INY+FV G Y + +L+  VL  L  +   +AVEG ++V APF PCL W+L +R  WL
Sbjct:    1 MAFALFAPAETINYDFVAGMYGLFTLLALVLYVLQHY--TDAVEGFYIVMAPFAPCLLWSLVVRRNWL 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1416.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LG57_ECTSI1.000e-3582.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHB9_9STRA7.300e-1860.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0WX27_9STRA2.770e-1453.23Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LTT7_9STRA9.860e-1349.18Aste57867_25328 protein n=1 Tax=Aphanomyces stella... [more]
W4H014_9STRA1.880e-1244.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1CIP0_PYTOL2.090e-1246.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024U344_9STRA2.610e-1247.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A484E7D4_BRELC7.810e-1245.16Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1V9ZEU9_9STRA5.880e-1147.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067BS30_SAPPC2.530e-944.12Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1416contigH-canaliculatus_F_contig1416:11694..12688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.5e-26
Seed eggNOG ortholog2880.D8LG57
EggNOG OGs2E69C@1,2SD06@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001860.1
Exons2
Model size273
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1416.3277.1prot_H-canaliculatus_F_contig1416.3277.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1416 11694..12685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.6088336-CDS-H-canaliculatus_F_contig1416:11693..118551622929165.6088336-CDS-H-canaliculatus_F_contig1416:11693..11855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 11694..11855 -
1696845702.2064662-CDS-H-canaliculatus_F_contig1416:11693..118551696845702.2064662-CDS-H-canaliculatus_F_contig1416:11693..11855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 11694..11855 -
1622929165.6278489-CDS-H-canaliculatus_F_contig1416:12577..126851622929165.6278489-CDS-H-canaliculatus_F_contig1416:12577..12685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 12578..12685 -
1696845702.2180228-CDS-H-canaliculatus_F_contig1416:12577..126851696845702.2180228-CDS-H-canaliculatus_F_contig1416:12577..12685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 12578..12685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.643286-UTR-H-canaliculatus_F_contig1416:12685..126881622929165.643286-UTR-H-canaliculatus_F_contig1416:12685..12688Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1416 12686..12688 -
1696845702.2276773-UTR-H-canaliculatus_F_contig1416:12685..126881696845702.2276773-UTR-H-canaliculatus_F_contig1416:12685..12688Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1416 12686..12688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1416.3277.1

>prot_H-canaliculatus_F_contig1416.3277.1 ID=prot_H-canaliculatus_F_contig1416.3277.1|Name=mRNA_H-canaliculatus_F_contig1416.3277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MVLPLTTPSPGINYNFVTGAYLVCSLILGVLVTLDKHLHVEAVEGAWVVF
APFLPCLAWALGMRSKWLAAGGSGSSADGTSPDVKPKDD*
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mRNA from alignment at H-canaliculatus_F_contig1416:11694..12688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1416.3277.1 ID=mRNA_H-canaliculatus_F_contig1416.3277.1|Name=mRNA_H-canaliculatus_F_contig1416.3277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=995bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:11694..12688- (Hapterophycus canaliculatus Oshoro5f female)
GCGATGGTCCTCCCGTTGACGACGCCATCCCCCGGGATCAACTACAACTT
TGTGACGGGGGCGTATCTCGTATGCTCGTTGATACTGGGGGTTCTAGTTA
CGTTGGATAAGGTGAGGTTCAGTTCCTTGAGTAACCAAAGACCAAACACC
GATGATTTTCTGTGTTCGAACCTTTGAACTTCCCGGTAGGTGCAGTCTGT
ACAATGAGTACCTGGTTGCACCACGGCAGCATCGCACCTACCAAGCGACG
GCTTCATAACCCATCCCAAGCTCCTACCCTGTGGTTGGTTTGTTGAATCT
GGCGGTCAACATTGTCGCCATGTTTTTCACGGTGTCGTGGTGTCGAAAGT
AGTCCGCCCGATGAACAGGGAATGAGGGTTCAGGCGATCTTTGAAGACAA
TCTCTTGCTTCCTGTGCACCTTCTGCTGTGCTACCCTCTGCTCTGCACCC
CTAACCTGAGTGAGTCGTCTCACCCAAGAAGCCTGACTAATTGATCAGAA
AACTCAGTCAATTTTCTCGATCTAGGCATTCTGGTGGCTGTTTAGCTGGG
GCTTCTCTTCGTAGACTGCATATGGCACCAGCCTTGACGATTCACTGACT
CCTGATCATGCGCACCCATCGAATGCTAAGGACGAAACAGCGGCACATAG
CGTTTTCTGCTGCTGCTGCTGCTGCTGCTCTTCCTCTGTTGCCGATGTAC
TTAACTTCCTGCTTTTGTTTCCCGTCCTCTCCCGCTTCTTCGTCGAACGA
ACAAATGCGGGGTCTCGGCGCCGATGACAAACGTCGAAACCAACAATCCA
CGGCAATGGCGGCGAAACAACCATGATAAACAGCACCTGCACGTGGAAGC
GGTGGAAGGGGCGTGGGTAGTCTTCGCGCCGTTCCTCCCGTGCCTGGCAT
GGGCTCTGGGGATGCGGTCCAAATGGCTCGCAGCAGGCGGTAGTGGCAGC
TCTGCCGATGGTACAAGTCCCGACGTAAAACCGAAAGATGACTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1416:11694..12688-

>mRNA_H-canaliculatus_F_contig1416.3277.1 ID=mRNA_H-canaliculatus_F_contig1416.3277.1|Name=mRNA_H-canaliculatus_F_contig1416.3277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:11694..12688- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCCTCCCGTTGACGACGCCATCCCCCGGGATCAACTACAACTTTGT
GACGGGGGCGTATCTCGTATGCTCGTTGATACTGGGGGTTCTAGTTACGT
TGGATAAGATGGTCCTCCCGTTGACGACGCCATCCCCCGGGATCAACTAC
AACTTTGTGACGGGGGCGTATCTCGTATGCTCGTTGATACTGGGGGTTCT
AGTTACGTTGGATAAGCACCTGCACGTGGAAGCGGTGGAAGGGGCGTGGG
TAGTCTTCGCGCCGTTCCTCCCGTGCCTGGCATGGGCTCTGGGGATGCGG
TCCAAATGGCTCGCAGCAGGCGGTAGTGGCAGCTCTGCCGATGGTACAAG
TCCCGACGTAAAACCGAAAGATGACTGACACCTGCACGTGGAAGCGGTGG
AAGGGGCGTGGGTAGTCTTCGCGCCGTTCCTCCCGTGCCTGGCATGGGCT
CTGGGGATGCGGTCCAAATGGCTCGCAGCAGGCGGTAGTGGCAGCTCTGC
CGATGGTACAAGTCCCGACGTAAAACCGAAAGATGACTGA
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