mRNA_H-canaliculatus_F_contig14149.3269.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14149.3269.1
Unique NamemRNA_H-canaliculatus_F_contig14149.3269.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14149.3269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14149contigH-canaliculatus_F_contig14149:2085..2442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14149.3269.1prot_H-canaliculatus_F_contig14149.3269.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14149 2111..2440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.6934867-UTR-H-canaliculatus_F_contig14149:2084..21101622929164.6934867-UTR-H-canaliculatus_F_contig14149:2084..2110Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14149 2085..2110 +
1696845701.843201-UTR-H-canaliculatus_F_contig14149:2084..21101696845701.843201-UTR-H-canaliculatus_F_contig14149:2084..2110Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14149 2085..2110 +
1622929164.717271-UTR-H-canaliculatus_F_contig14149:2440..24421622929164.717271-UTR-H-canaliculatus_F_contig14149:2440..2442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14149 2441..2442 +
1696845701.8627765-UTR-H-canaliculatus_F_contig14149:2440..24421696845701.8627765-UTR-H-canaliculatus_F_contig14149:2440..2442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14149 2441..2442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.704067-CDS-H-canaliculatus_F_contig14149:2110..24401622929164.704067-CDS-H-canaliculatus_F_contig14149:2110..2440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 2111..2440 +
1696845701.8526518-CDS-H-canaliculatus_F_contig14149:2110..24401696845701.8526518-CDS-H-canaliculatus_F_contig14149:2110..2440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 2111..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14149.3269.1

>prot_H-canaliculatus_F_contig14149.3269.1 ID=prot_H-canaliculatus_F_contig14149.3269.1|Name=mRNA_H-canaliculatus_F_contig14149.3269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MGREVGGRRERNGRQQRNQRLKEQQLLLESRVRHKRACGAVGGDCSCLSS
CLFPLVFQNAGNASLQRTCLPGRQRNGLVRIQALSLLPFFDPDRKRAHSR
RPSPCWKTR*
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mRNA from alignment at H-canaliculatus_F_contig14149:2085..2442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14149.3269.1 ID=mRNA_H-canaliculatus_F_contig14149.3269.1|Name=mRNA_H-canaliculatus_F_contig14149.3269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=358bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14149:2085..2442+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCGCGAGTGGAACCCGCCCAACCGATGGGGCGAGAGGTGGGGGGCAGG
AGAGAAAGAAACGGGCGGCAGCAGCGTAATCAACGGCTTAAAGAGCAACA
ACTCCTGCTGGAGAGTAGAGTGCGCCACAAGCGTGCATGTGGCGCTGTCG
GCGGTGACTGTTCATGCTTGAGCAGCTGTCTTTTCCCCCTTGTTTTCCAA
AACGCTGGCAACGCATCACTTCAGAGGACGTGCCTGCCGGGCCGCCAACG
GAACGGACTGGTCAGAATCCAAGCGCTTTCTCTGCTTCCTTTCTTCGACC
CCGATCGAAAACGAGCGCACTCACGTCGCCCTTCCCCCTGTTGGAAAACT
CGCTGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14149:2085..2442+

>mRNA_H-canaliculatus_F_contig14149.3269.1 ID=mRNA_H-canaliculatus_F_contig14149.3269.1|Name=mRNA_H-canaliculatus_F_contig14149.3269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14149:2085..2442+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCGAGAGGTGGGGGGCAGGAGAGAAAGAAACGGGCGGCAGCAGCG
TAATCAACGGCTTAAAGAGCAACAACTCCTGCTGGAGAGTAGAGTGCGCC
ACAAGCGTGCATGTGGCGCTGTCGGCGGTGACTGTTCATGCTTGAGCAGC
TGTCTTTTCCCCCTTGTTTTCCAAAACGCTGGCAACGCATCACTTCAGAG
GACGTGCCTGCCGGGCCGCCAACGGAACGGACTGGTCAGAATCCAAGCGC
TTTCTCTGCTTCCTTTCTTCGACCCCGATCGAAAACGAGCGCACTCACGT
CGCCCTTCCCCCTGTTGGAAAACTCGCTGAATGGGGCGAGAGGTGGGGGG
CAGGAGAGAAAGAAACGGGCGGCAGCAGCGTAATCAACGGCTTAAAGAGC
AACAACTCCTGCTGGAGAGTAGAGTGCGCCACAAGCGTGCATGTGGCGCT
GTCGGCGGTGACTGTTCATGCTTGAGCAGCTGTCTTTTCCCCCTTGTTTT
CCAAAACGCTGGCAACGCATCACTTCAGAGGACGTGCCTGCCGGGCCGCC
AACGGAACGGACTGGTCAGAATCCAAGCGCTTTCTCTGCTTCCTTTCTTC
GACCCCGATCGAAAACGAGCGCACTCACGTCGCCCTTCCCCCTGTTGGAA
AACTCGCTGA
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