mRNA_H-canaliculatus_F_contig13975.3151.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13975.3151.1
Unique NamemRNA_H-canaliculatus_F_contig13975.3151.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13975.3151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13975contigH-canaliculatus_F_contig13975:578..1303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size728
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.6789753-CDS-H-canaliculatus_F_contig13975:577..11291622929142.6789753-CDS-H-canaliculatus_F_contig13975:577..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13975 578..1129 +
1696845693.747225-CDS-H-canaliculatus_F_contig13975:577..11291696845693.747225-CDS-H-canaliculatus_F_contig13975:577..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13975 578..1129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.6904414-UTR-H-canaliculatus_F_contig13975:1129..13031622929142.6904414-UTR-H-canaliculatus_F_contig13975:1129..1303Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13975 1130..1303 +
1696845693.7563665-UTR-H-canaliculatus_F_contig13975:1129..13031696845693.7563665-UTR-H-canaliculatus_F_contig13975:1129..1303Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13975 1130..1303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13975.3151.1prot_H-canaliculatus_F_contig13975.3151.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13975 578..1129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13975.3151.1

>prot_H-canaliculatus_F_contig13975.3151.1 ID=prot_H-canaliculatus_F_contig13975.3151.1|Name=mRNA_H-canaliculatus_F_contig13975.3151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
HGGRRRSSSSGRRCLCRGHKRHRCRRHTRHRCHCRTRRRPRRPRRRAFIK
RIGGKRQVHAPAAAAAADSFVLPYAKEFAPITVLVELATRIAGGLVEARV
DGAVLARPRKIAPALAVAAAGAVVLASQSVARADDRISARLADIRLGFGF
GFGFGSAAVSAVSAVPCPTAVGVGIFAGRIHDR*
back to top

mRNA from alignment at H-canaliculatus_F_contig13975:578..1303+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13975.3151.1 ID=mRNA_H-canaliculatus_F_contig13975.3151.1|Name=mRNA_H-canaliculatus_F_contig13975.3151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13975:578..1303+ (Hapterophycus canaliculatus Oshoro5f female)
CACGGAGGGCGCCGCCGCAGCAGCAGCAGCGGCCGACGGTGCCTCTGCCG
GGGGCACAAACGCCATCGGTGCCGGCGGCACACCCGCCATCGGTGCCACT
GCCGCACCCGCCGGCGCCCCCGGCGCCCCCGGCGCCGGGCATTCATCAAA
CGCATCGGGGGGAAGAGGCAAGTGCATGCTCCGGCAGCCGCCGCCGCCGC
CGACTCCTTCGTCCTCCCATATGCAAAGGAATTTGCTCCCATTACTGTGC
TTGTTGAGCTCGCGACACGCATCGCAGGAGGACTGGTCGAGGCACGCGTT
GACGGAGCAGTACTCGCCCGTCCACGGAAAATTGCACCCGCACTTGCCGT
CGCCGCCGCCGGTGCCGTAGTACTCGCAAGCCAGTCTGTCGCCCGCGCAG
ACGACCGAATCAGCGCACGCCTTGCCGACATTCGCCTTGGCTTCGGCTTC
GGCTTCGGCTTCGGCAGCGCTGCCGTATCCGCCGTATCCGCCGTACCCTG
CCCTACCGCCGTCGGCGTCGGCATCTTCGCCGGCCGGATTCACGATAGGT
GAAAGATCGCCGGCCCCCTGCGCAAAGTCCTGGCTGCTGCTCGCGCTCTG
CATGCCAGGTTCCCTCGCGAGATCCGTGACCGAACCGCGTTCTCCGAAGG
GCTCGTCGCCTCCATCACCCCGGTCCCCGGCCGCGCCCCCCGACACGTGC
CCGGCGCCGCTCGCGCTCTGCACTTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13975:578..1303+

>mRNA_H-canaliculatus_F_contig13975.3151.1 ID=mRNA_H-canaliculatus_F_contig13975.3151.1|Name=mRNA_H-canaliculatus_F_contig13975.3151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13975:578..1303+ (Hapterophycus canaliculatus Oshoro5f female)
CACGGAGGGCGCCGCCGCAGCAGCAGCAGCGGCCGACGGTGCCTCTGCCG
GGGGCACAAACGCCATCGGTGCCGGCGGCACACCCGCCATCGGTGCCACT
GCCGCACCCGCCGGCGCCCCCGGCGCCCCCGGCGCCGGGCATTCATCAAA
CGCATCGGGGGGAAGAGGCAAGTGCATGCTCCGGCAGCCGCCGCCGCCGC
CGACTCCTTCGTCCTCCCATATGCAAAGGAATTTGCTCCCATTACTGTGC
TTGTTGAGCTCGCGACACGCATCGCAGGAGGACTGGTCGAGGCACGCGTT
GACGGAGCAGTACTCGCCCGTCCACGGAAAATTGCACCCGCACTTGCCGT
CGCCGCCGCCGGTGCCGTAGTACTCGCAAGCCAGTCTGTCGCCCGCGCAG
ACGACCGAATCAGCGCACGCCTTGCCGACATTCGCCTTGGCTTCGGCTTC
GGCTTCGGCTTCGGCAGCGCTGCCGTATCCGCCGTATCCGCCGTACCCTG
CCCTACCGCCGTCGGCGTCGGCATCTTCGCCGGCCGGATTCACGATAGGT
GACACGGAGGGCGCCGCCGCAGCAGCAGCAGCGGCCGACGGTGCCTCTGC
CGGGGGCACAAACGCCATCGGTGCCGGCGGCACACCCGCCATCGGTGCCA
CTGCCGCACCCGCCGGCGCCCCCGGCGCCCCCGGCGCCGGGCATTCATCA
AACGCATCGGGGGGAAGAGGCAAGTGCATGCTCCGGCAGCCGCCGCCGCC
GCCGACTCCTTCGTCCTCCCATATGCAAAGGAATTTGCTCCCATTACTGT
GCTTGTTGAGCTCGCGACACGCATCGCAGGAGGACTGGTCGAGGCACGCG
TTGACGGAGCAGTACTCGCCCGTCCACGGAAAATTGCACCCGCACTTGCC
GTCGCCGCCGCCGGTGCCGTAGTACTCGCAAGCCAGTCTGTCGCCCGCGC
AGACGACCGAATCAGCGCACGCCTTGCCGACATTCGCCTTGGCTTCGGCT
TCGGCTTCGGCTTCGGCAGCGCTGCCGTATCCGCCGTATCCGCCGTACCC
TGCCCTACCGCCGTCGGCGTCGGCATCTTCGCCGGCCGGATTCACGATAG
GTGA
back to top