mRNA_H-canaliculatus_F_contig13970.3147.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13970.3147.1
Unique NamemRNA_H-canaliculatus_F_contig13970.3147.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13970.3147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13970contigH-canaliculatus_F_contig13970:356..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.4818573-CDS-H-canaliculatus_F_contig13970:355..8111622929142.4818573-CDS-H-canaliculatus_F_contig13970:355..811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13970 356..811 +
1696845693.6891418-CDS-H-canaliculatus_F_contig13970:355..8111696845693.6891418-CDS-H-canaliculatus_F_contig13970:355..811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13970 356..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13970.3147.1prot_H-canaliculatus_F_contig13970.3147.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13970 356..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13970.3147.1

>prot_H-canaliculatus_F_contig13970.3147.1 ID=prot_H-canaliculatus_F_contig13970.3147.1|Name=mRNA_H-canaliculatus_F_contig13970.3147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
QVWRTLKDKFQPDDSSRRELITDLNSITMKEGADPDTFITDVWDLANKLE
CIGEGVTEARLSHIVLEGLPPSYDPVRLQADMDAGFTLSNIERTARNMYK
SRTRSQQQQRRHQRDSHERKSGMVAFSSKPHEFSRIVCHGCGGSGQMKRN
CP
back to top

mRNA from alignment at H-canaliculatus_F_contig13970:356..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13970.3147.1 ID=mRNA_H-canaliculatus_F_contig13970.3147.1|Name=mRNA_H-canaliculatus_F_contig13970.3147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13970:356..811+ (Hapterophycus canaliculatus Oshoro5f female)
CAAGTCTGGCGTACGCTTAAGGACAAGTTTCAGCCGGATGACAGCAGTCG
CCGTGAGCTAATCACGGACCTCAACAGCATTACCATGAAAGAGGGTGCAG
ATCCCGATACGTTTATCACTGACGTGTGGGATCTGGCAAACAAGCTGGAA
TGCATAGGCGAGGGCGTCACGGAAGCGCGTCTCTCACATATCGTCCTGGA
AGGACTGCCACCGTCGTACGACCCTGTACGTCTTCAAGCGGACATGGATG
CAGGTTTCACCCTGTCAAATATCGAACGGACCGCGCGCAACATGTACAAG
AGCCGGACGCGCAGTCAGCAGCAGCAACGTCGCCATCAGCGCGACAGTCA
CGAGAGGAAATCAGGTATGGTAGCCTTTTCCTCTAAACCACACGAGTTTT
CGCGGATTGTGTGTCACGGCTGCGGTGGGTCGGGACAAATGAAGCGCAAT
TGCCCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13970:356..811+

>mRNA_H-canaliculatus_F_contig13970.3147.1 ID=mRNA_H-canaliculatus_F_contig13970.3147.1|Name=mRNA_H-canaliculatus_F_contig13970.3147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13970:356..811+ (Hapterophycus canaliculatus Oshoro5f female)
CAAGTCTGGCGTACGCTTAAGGACAAGTTTCAGCCGGATGACAGCAGTCG
CCGTGAGCTAATCACGGACCTCAACAGCATTACCATGAAAGAGGGTGCAG
ATCCCGATACGTTTATCACTGACGTGTGGGATCTGGCAAACAAGCTGGAA
TGCATAGGCGAGGGCGTCACGGAAGCGCGTCTCTCACATATCGTCCTGGA
AGGACTGCCACCGTCGTACGACCCTGTACGTCTTCAAGCGGACATGGATG
CAGGTTTCACCCTGTCAAATATCGAACGGACCGCGCGCAACATGTACAAG
AGCCGGACGCGCAGTCAGCAGCAGCAACGTCGCCATCAGCGCGACAGTCA
CGAGAGGAAATCAGGTATGGTAGCCTTTTCCTCTAAACCACACGAGTTTT
CGCGGATTGTGTGTCACGGCTGCGGTGGGTCGGGACAAATGAAGCGCAAT
TGCCCACAAGTCTGGCGTACGCTTAAGGACAAGTTTCAGCCGGATGACAG
CAGTCGCCGTGAGCTAATCACGGACCTCAACAGCATTACCATGAAAGAGG
GTGCAGATCCCGATACGTTTATCACTGACGTGTGGGATCTGGCAAACAAG
CTGGAATGCATAGGCGAGGGCGTCACGGAAGCGCGTCTCTCACATATCGT
CCTGGAAGGACTGCCACCGTCGTACGACCCTGTACGTCTTCAAGCGGACA
TGGATGCAGGTTTCACCCTGTCAAATATCGAACGGACCGCGCGCAACATG
TACAAGAGCCGGACGCGCAGTCAGCAGCAGCAACGTCGCCATCAGCGCGA
CAGTCACGAGAGGAAATCAGGTATGGTAGCCTTTTCCTCTAAACCACACG
AGTTTTCGCGGATTGTGTGTCACGGCTGCGGTGGGTCGGGACAAATGAAG
CGCAATTGCCCA
back to top