mRNA_H-canaliculatus_F_contig1394.3130.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1394.3130.1
Unique NamemRNA_H-canaliculatus_F_contig1394.3130.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1394.3130.1 vs. uniprot
Match: D8LJR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR3_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 9.880e-94
Identity = 153/204 (75.00%), Postives = 172/204 (84.31%), Query Frame = 2 
Query:    2 RELLATTEAKVMLAIDEYNELFQMSHWHFGDNKLEAPDLTATVPLIPRLVSTEVGLAFADEAVASLANPK--AEQP----------WLGSEAGAACLPPPPANGIVVCAMTGRYPPLKKLRKKKKWAPFEETAGRLAKAVSIPVEPYSRRELLRVLKHYAKVEEVVHEPLGRMEEAKVHAKSDGIPEHVFETCRGGRYHTVVYE 577
            RELLATTEAKVMLAIDEYNELFQMS WH+GDNKLEAP LTAT+PL+P LVST  GLAFAD++VA+LANP+  AE+           W+  E GAACLPPPPANGIVVCA++GRYPPLK+LRK KKW PFE TAGRLA+AVSIPVEPY+RRE LRVLKHYA+VEEVV+EPL  ME AKVHAKSD +PEHVF+TCR GRY T V+E
Sbjct:  475 RELLATTEAKVMLAIDEYNELFQMSQWHYGDNKLEAPHLTATLPLLPPLVSTGTGLAFADDSVAALANPEVVAERKRTPAEAGGVAWMSPETGAACLPPPPANGIVVCAVSGRYPPLKRLRKNKKWVPFEATAGRLAQAVSIPVEPYTRREFLRVLKHYARVEEVVNEPLDTMEVAKVHAKSDSLPEHVFDTCRAGRYRTAVHE 678
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BLAST of mRNA_H-canaliculatus_F_contig1394.3130.1 vs. uniprot
Match: A0A6H5KXH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH7_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 6.210e-53
Identity = 103/151 (68.21%), Postives = 119/151 (78.81%), Query Frame = 2 
Query:    2 RELLATTEAKVMLAIDEYNELFQMSHWHFGDNK-------LEAPDLTATVPLIPRLVSTEVGLAFADEAVASLANPK--AEQP----------WLGSEAGAACLPPPPANGIVVCAMTGRYPPLKKLRKKKKWAPFEETAGRLAKAVSIPV 397
            RELLATTEAKVMLAIDEYNELFQMSHW++GD+K       LEAP LTAT+PL+P LVST  GLAFAD++VA+LANP+  AE            W+  E GAACLPPPPANGIVVCA++GRYPP+K+LRK KKW PFE TAGRLA+AVS+ V
Sbjct:  442 RELLATTEAKVMLAIDEYNELFQMSHWYYGDSKASAAVSRLEAPHLTATLPLLPPLVSTGTGLAFADDSVAALANPEVVAETKRTPAEAGGGAWMSPETGAACLPPPPANGIVVCAVSGRYPPVKRLRKNKKWVPFEATAGRLAQAVSVRV 592
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BLAST of mRNA_H-canaliculatus_F_contig1394.3130.1 vs. uniprot
Match: A0A836C8P4_9STRA (Mitochondrial ribosomal death-associated protein 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.250e-9
Identity = 57/196 (29.08%), Postives = 83/196 (42.35%), Query Frame = 2 
Query:    5 ELLATTEAKVMLAIDEYNELFQMSHWHFG----------------DNKLEAPDLTATVPLIPRLVSTEVGLAFADEAVASLANPKAEQPWLGSEAGAACLPPP--PANGIVVCAMTGRYPPLKKLRKKK-KWAPFEETAGRLAKAVSIPVEPYSRRELLRVLKHYAKVEEVVHEPLGRMEEAKVHAKSDGIPEHVF 535
            ELL+T    V+LA+DEY+ELFQ S WH+                 ++K+    L   +  IP    T V                   P+     G  C P P  P  G V+ A T  YPP++K++ K  +W  F++  G  A   ++   PYS  E    L HYA  +      LG  + A+V  K+   P+ +F
Sbjct:  381 ELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFM---------------PFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIF 561
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1394.3130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJR3_ECTSI9.880e-9475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXH7_9PHAE6.210e-5368.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8P4_9STRA3.250e-929.08Mitochondrial ribosomal death-associated protein 3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1394contigH-canaliculatus_F_contig1394:23496..25981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue4.1e-74
Seed eggNOG ortholog2880.D8LJR3
Preferred nameDAP3
KEGG koko:K06072,ko:K17408
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012501,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0023052,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097190,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3928@1,KOG3928@2759
EC1.14.99.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko01000,ko03011,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial ribosomal protein S23/S29
Ec32 orthologEc-12_002970.1
Exons4
Model size1002
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1394.3130.1prot_H-canaliculatus_F_contig1394.3130.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1394 23530..25559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.3407595-UTR-H-canaliculatus_F_contig1394:23495..235291622929139.3407595-UTR-H-canaliculatus_F_contig1394:23495..23529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1394 23496..23529 +
1696845692.3370888-UTR-H-canaliculatus_F_contig1394:23495..235291696845692.3370888-UTR-H-canaliculatus_F_contig1394:23495..23529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1394 23496..23529 +
1622929139.4004056-UTR-H-canaliculatus_F_contig1394:25559..259811622929139.4004056-UTR-H-canaliculatus_F_contig1394:25559..25981Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1394 25560..25981 +
1696845692.3894863-UTR-H-canaliculatus_F_contig1394:25559..259811696845692.3894863-UTR-H-canaliculatus_F_contig1394:25559..25981Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1394 25560..25981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.3550897-CDS-H-canaliculatus_F_contig1394:23529..235951622929139.3550897-CDS-H-canaliculatus_F_contig1394:23529..23595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 23530..23595 +
1696845692.351169-CDS-H-canaliculatus_F_contig1394:23529..235951696845692.351169-CDS-H-canaliculatus_F_contig1394:23529..23595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 23530..23595 +
1622929139.3660939-CDS-H-canaliculatus_F_contig1394:24070..243581622929139.3660939-CDS-H-canaliculatus_F_contig1394:24070..24358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 24071..24358 +
1696845692.3630927-CDS-H-canaliculatus_F_contig1394:24070..243581696845692.3630927-CDS-H-canaliculatus_F_contig1394:24070..24358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 24071..24358 +
1622929139.3784106-CDS-H-canaliculatus_F_contig1394:24975..250541622929139.3784106-CDS-H-canaliculatus_F_contig1394:24975..25054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 24976..25054 +
1696845692.3710403-CDS-H-canaliculatus_F_contig1394:24975..250541696845692.3710403-CDS-H-canaliculatus_F_contig1394:24975..25054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 24976..25054 +
1622929139.3893673-CDS-H-canaliculatus_F_contig1394:25446..255591622929139.3893673-CDS-H-canaliculatus_F_contig1394:25446..25559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 25447..25559 +
1696845692.3797731-CDS-H-canaliculatus_F_contig1394:25446..255591696845692.3797731-CDS-H-canaliculatus_F_contig1394:25446..25559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1394 25447..25559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1394.3130.1

>prot_H-canaliculatus_F_contig1394.3130.1 ID=prot_H-canaliculatus_F_contig1394.3130.1|Name=mRNA_H-canaliculatus_F_contig1394.3130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=182bp
MLAIDEYNELFQMSHWHFGDNKLEAPDLTATVPLIPRLVSTEVGLAFADE
AVASLANPKAEQPWLGSEAGAACLPPPPANGIVVCAMTGRYPPLKKLRKK
KKWAPFEETAGRLAKAVSIPVEPYSRRELLRVLKHYAKVEEVVHEPLGRM
EEAKVHAKSDGIPEHVFETCRGGRYHTVVYE*
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mRNA from alignment at H-canaliculatus_F_contig1394:23496..25981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1394.3130.1 ID=mRNA_H-canaliculatus_F_contig1394.3130.1|Name=mRNA_H-canaliculatus_F_contig1394.3130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1394:23496..25981+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGAGTTGCTGGCGACCACCGAGGCCAAGGTGATGCTGGCTATCGACG
AGTACAACGAGCTCTTCCAGATGTCCCACTGGCACTTCGGCGACAACAAG
GCAAGTGGATTGATTTTGGGTCTGAGGGGAGAGAGGAGCACAGCGGGTTT
CGAGAGGGGAGCGGCGTGGGTTCGATGGGGTTCAAAGCCGCTGCGGTTCT
CGACGCGATTTAGCGCGGGAACCGTGAAAGCATGCTTGGTTGCGAGCCAA
TGAAGTTGCCTTCCGCACGTCCTTTCCGAGCAGCGTTTCTCGCCGATCCG
TCAGCATCGGAAATGTCTGTAAACGGCGTGCGTCGTTGCTCCTCGTGTCG
TCTGCTGCCACACCATTCCGCGCGAGTCTTTGGAAGCGGTGCATGCTTTC
CTCCTTACGACTTCAGAGTGCGGGCAAGGCACTCACTGCTACTGAGTCCA
CCCGCTCCGTCGAATCCAAGCTGTTCACGACTGTGCTCCCCCCCTGAAAC
CGAGACACAGCTCCAATCTAACGATCCCCTCCCGCCCCCTCTCCACGCCG
ACTGACCGACCACCCTACACCACAGTTGGAGGCGCCGGATCTCACGGCGA
CGGTGCCGCTGATCCCGCGTTTGGTGTCGACAGAGGTCGGTCTAGCCTTC
GCAGACGAAGCGGTGGCGTCTCTTGCCAACCCGAAGGCGGAGCAGCCGTG
GCTGGGCTCTGAGGCCGGAGCGGCGTGCCTGCCGCCCCCGCCGGCGAACG
GGATCGTGGTGTGCGCCATGACCGGGAGGTACCCGCCGCTGAAGAAGCTG
AGGAAGAAGAAGAAGTGGGCCCCTTTCGAGGAGACCGCCGGCCGGCTGGC
CAAGGCCGTGTCGGTGAGTGGCGCCGCGACGCGGAGGAGGCGGTGGACGA
GAGGTGGACGAGTGGTGGTGGTGGTGGTGGTGGTGGTTCTCGTGAAGGAT
GGGGTGGGATGTGGATACGATGAGATACATGGAATGCCTGCCTCGTTGTC
TCTAGTTGTATTTCTCCGGCTCGTTTGCTCTCGTTTGCTGTCTCGCTGGT
TGCCCTCACGATGTGAGCATACGAGTGCGCGGATCCGGTCTCTTGTGTGT
TGATCTGGCCTGCCTGCCTGCCTGCCTGGGTTCTGAATCACTGTCGTTCA
ATCGTCCACGAGCTGGAGTCGCTTTCAATGCTAGGCCGGCACGGCTGTAT
CCGTCTGACGAAGAGATGCGGCGAGGGAAGCAGTCCACACACGAAGGAAG
AAACGGGCACCCCGCGTCGCATTCCTGGCCCTCGCCTCTCTACTTTATCC
CGTGCTACTCGGCACCTTTTCGAAAGAGAAGAGCCCCCTTACGGATCCGT
AGCCGTGGAGCGATGGCGAGGCACGGCGAGAGAAATATTCAAAGATAAAG
AGGCATGACTCTATCTACCCCATGCCCGCTGATGTCCTCTTCGTGGTGCT
CTTGTCCACCGTTCCGTCGTCGTGCCTCAGATCCCAGTCGAGCCCTACAG
CCGGCGGGAGTTGCTGCGCGTGTTGAAGCACTACGCCAAGGTGGAGGAGG
TCGTCCACGGTAAGAGCGAAGCTTGGGAAAACTGAGGCCCGAAATACGCA
AGCAGCCATGAAGCAGGATGTAGGTGTAGGCGGTTGCTAGCGGTGGTTGT
TGAGGTGAACTTGCGGATGCGATGCCCCCAACGTCTTCCGGCTTAGCTGG
CGCACTGGGTTTCACCCTCGAAAACAACAAACCAACCGTGATACACAACG
TGCGCTCGCAGTGGCTGCGATTCTCGCAGTACCTGTATGTGCAAAAATTC
AAGAAGAGTAGGGGTTGGTGCTTTGCCGGCCGACGGGCGAGCCCATGTCC
CGCGTCCCGCCCGGGTCCTGATTGTCGTACCTGTTACGTTCCCGTCCACC
CACCCCCCCCCCCCGGATGATTCGTTCTGTTCGTGTGTACGAATTCCGCA
GAGCCTCTGGGAAGAATGGAAGAGGCCAAAGTGCACGCCAAGTCGGACGG
TATCCCCGAGCATGTGTTCGAGACCTGCAGAGGGGGGCGCTACCACACGG
TCGTCTACGAATGATCGACAACAGTTCAGATTGGCGCGCCCTTAAGAAAA
TGATCTCCCTGACGAGCCGTGGGATACACCCGGGGCTTGAGGTTTTGGTT
GCCGCCGGCTCGTAGGCCGGCGTGTTCGGTTAGGGGACAAAACTTTCTGC
ACATTGGGAAGCTTGAGGAGCAACGATGGGTTTGGCGGACGGACAATCGG
AGGGTCACTGGGAATTCTGTTTGATGCTTTTCTCGCGAATAACAAAGAGC
ATCGGGTGCACCCTTTCAATTTCTGCGTCGCTGGCCGAGAATTCCTCCGC
CGGTCAAGTGTTCCATCGAGAGACGCTGACTTGTCTTGTCTCTCAGGCAT
TTGGTTTGGGTTTTGAGTCTTTGGGCTGGCTGGTGCACGAAGCATTGGGC
TAGATTGACTGCGGCTCTGCTGCGGCGATATGCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1394:23496..25981+

>mRNA_H-canaliculatus_F_contig1394.3130.1 ID=mRNA_H-canaliculatus_F_contig1394.3130.1|Name=mRNA_H-canaliculatus_F_contig1394.3130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1092bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1394:23496..25981+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGCTATCGACGAGTACAACGAGCTCTTCCAGATGTCCCACTGGCA
CTTCGGCGACAACAAGATGCTGGCTATCGACGAGTACAACGAGCTCTTCC
AGATGTCCCACTGGCACTTCGGCGACAACAAGTTGGAGGCGCCGGATCTC
ACGGCGACGGTGCCGCTGATCCCGCGTTTGGTGTCGACAGAGGTCGGTCT
AGCCTTCGCAGACGAAGCGGTGGCGTCTCTTGCCAACCCGAAGGCGGAGC
AGCCGTGGCTGGGCTCTGAGGCCGGAGCGGCGTGCCTGCCGCCCCCGCCG
GCGAACGGGATCGTGGTGTGCGCCATGACCGGGAGGTACCCGCCGCTGAA
GAAGCTGAGGAAGAAGAAGAAGTGGGCCCCTTTCGAGGAGACCGCCGGCC
GGCTGGCCAAGGCCGTGTCGTTGGAGGCGCCGGATCTCACGGCGACGGTG
CCGCTGATCCCGCGTTTGGTGTCGACAGAGGTCGGTCTAGCCTTCGCAGA
CGAAGCGGTGGCGTCTCTTGCCAACCCGAAGGCGGAGCAGCCGTGGCTGG
GCTCTGAGGCCGGAGCGGCGTGCCTGCCGCCCCCGCCGGCGAACGGGATC
GTGGTGTGCGCCATGACCGGGAGGTACCCGCCGCTGAAGAAGCTGAGGAA
GAAGAAGAAGTGGGCCCCTTTCGAGGAGACCGCCGGCCGGCTGGCCAAGG
CCGTGTCGATCCCAGTCGAGCCCTACAGCCGGCGGGAGTTGCTGCGCGTG
TTGAAGCACTACGCCAAGGTGGAGGAGGTCGTCCACGATCCCAGTCGAGC
CCTACAGCCGGCGGGAGTTGCTGCGCGTGTTGAAGCACTACGCCAAGGTG
GAGGAGGTCGTCCACGAGCCTCTGGGAAGAATGGAAGAGGCCAAAGTGCA
CGCCAAGTCGGACGGTATCCCCGAGCATGTGTTCGAGACCTGCAGAGGGG
GGCGCTACCACACGGTCGTCTACGAATGAAGCCTCTGGGAAGAATGGAAG
AGGCCAAAGTGCACGCCAAGTCGGACGGTATCCCCGAGCATGTGTTCGAG
ACCTGCAGAGGGGGGCGCTACCACACGGTCGTCTACGAATGA
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