mRNA_H-canaliculatus_F_contig13884.3081.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13884.3081.1
Unique NamemRNA_H-canaliculatus_F_contig13884.3081.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: D8LI29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 2.130e-90
Identity = 146/170 (85.88%), Postives = 155/170 (91.18%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPL--APDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +ALKFMEC+DGW+ATALKTYLLERL HLS KQGEYKMQRTMLCTWLTE+FLRGFTYLPL     +EREEAE SLAEELKSFLR Y+SALDPATTM LLSKHGRGEEALFYATLVEDYDRVLAHH + H  DH++ALEVLRKAPFDKVEPLVYKYSASLMAADPAGTI TW
Sbjct:  328 IALKFMECEDGWKATALKTYLLERLGHLSQKQGEYKMQRTMLCTWLTEIFLRGFTYLPLDSGTAREREEAENSLAEELKSFLREYSSALDPATTMNLLSKHGRGEEALFYATLVEDYDRVLAHHTS-HGPDHKAALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIGTW 496
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 4.000e-89
Identity = 146/170 (85.88%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPL--APDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +ALKFMEC+DGW+ATALKTYLLERL HLS KQGEYKMQRTMLCTWLTE+FLRGFTYLPL     +EREEAE  LAEELKSFLR Y+SALDPATTM LLSKHGRGEEALFYATLVEDYDRVLAHH + H  DH +ALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW
Sbjct:  718 IALKFMECEDGWKATALKTYLLERLGHLSQKQGEYKMQRTMLCTWLTEIFLRGFTYLPLDSGTAREREEAENCLAEELKSFLRDYSSALDPATTMNLLSKHGRGEEALFYATLVEDYDRVLAHHTS-HGPDHNAALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 886
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A196SHF3_BLAHN (Vacuolar protein sorting-associated protein 18 n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SHF3_BLAHN)

HSP 1 Score: 134 bits (338), Expect = 1.970e-33
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +AL+FM  D G R  ALK YLL++L  +  K+   K QRT+LCTWLTE++L     + +A ++E EE +++L E  ++FL    + LD  TT +LLS HG  EE LF+A L+EDYDRVL+HH    D   ESA+ +L++ P +K EPL YK++  ++   P  T++ W
Sbjct:  465 IALQFM--DKGARP-ALKAYLLKKLDEVPPKK---KAQRTLLCTWLTEIYLDEINGMSIATEEEEEEKQSTLLE-FRNFLTERCACLDVPTTYSLLSSHGCVEELLFFARLIEDYDRVLSHHIQREDI--ESAIFILKEVPIEKAEPLYYKFAPQMLLMAPTETVDAW 623
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.280e-32
Identity = 79/174 (45.40%), Postives = 104/174 (59.77%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSL--KQGEYKMQRTMLCTWLTELFLRGFTYLP-LAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDA---DHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +AL F+E        AL+ YLL +L  LS   K   +K QRTMLCTWL EL+L      P  AP      A  +L+ E ++FL  ++SAL+   T ALL+ HGR ++ LF+A L  DY+RVLA H     A   D+ ++L  LR+AP +KVE LVY+YSA LM AD AGT+  W
Sbjct:  575 VALNFVEAAGEGGGAALREYLLRKLETLSPTGKWSGHKAQRTMLCTWLAELYLCALNDTPPTAP------ASAALSREFRTFLEQHSSALNAVATSALLAAHGRRDDVLFFAELTGDYERVLACHLAPRGASGPDYPASLAALRRAPLEKVEGLVYRYSAVLMDADAAGTVSMW 742
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A1V9ZE02_9STRA (Vacuolar protein sorting-associated protein 18 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE02_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.090e-31
Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +AL+FME       TAL ++LL++L   ++   E K Q T+LC+WL EL+L  F  L +   ++  +   +L  E K FL+ +   LDPATT  L+S HGR +E +FYA+L+EDY++V+ +H   H  ++ +A+E+L+ AP  KVE L YKYS  L+   P    E W
Sbjct:  487 VALRFMEVSA---TTALHSFLLQKL---NMTSPEDKTQATVLCSWLVELYLDKFNGLSVQTSEKDIDVHANLLFEFKQFLQDHKQHLDPATTFNLISSHGRADELVFYASLIEDYEKVVTYHI--HRGEYGAAIELLKGAPTQKVEELYYKYSPELIIHKPKEVFEVW 646
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A485KTJ2_9STRA (Aste57867_11642 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTJ2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.710e-30
Identity = 71/171 (41.52%), Postives = 101/171 (59.06%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQERE---EAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +AL+FME        AL T+LL++L   S+     K Q T+LCTWL ELFL  F  L +  + + E   +   +L  E K FL+ +   LDPATT  L++ HGR +E +F+A L+EDY++V+ +H   H  ++ +A+E+LR AP  KVE L YKYS  L+ A P    E W
Sbjct:  503 VALRFMEAKA---TNALHTFLLQKLELTSVDD---KTQATVLCTWLVELFLDKFNDLTMGGEHDVERTIDLHANLLFEFKQFLQDHKRHLDPATTFNLIASHGRTDELVFFAGLIEDYEKVVTYHI--HRGEYGAAIELLRGAPTQKVEELYYKYSPELIVAKPKEVFEAW 665
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: UPI00071141C8 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071141C8)

HSP 1 Score: 124 bits (310), Expect = 1.140e-29
Identity = 71/168 (42.26%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            + L+FME        ALK YLL +L  LS+KQ   K QRT+L TWLTE++L     + +  ++E EEA+ ++  E + FL  Y+  LD ATT +LLS HG  EE LF+A  +EDYDRVL HH    D    SA+ +L++ P ++ E L YKY+  ++ + P  T++ W
Sbjct:  475 ITLQFMEQKAR---PALKKYLLLKLGSLSIKQ---KAQRTLLGTWLTEIYLDEINGMGITTEEE-EEAKQAMILEFRKFLTEYSGDLDVATTYSLLSSHGCIEELLFFARRIEDYDRVLTHHIQREDIA--SAIFILQEVPVERAEALYYKYAPQMLLSSPHETVDAW 633
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: K3WGY8_GLOUD (Pep3_Vps18 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGY8_GLOUD)

HSP 1 Score: 121 bits (304), Expect = 7.370e-29
Identity = 67/168 (39.88%), Postives = 100/168 (59.52%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +ALKF+E +      +L  +LL++L+ L     + K Q+T+LC+W+ ELFL  F  +      +  +A  +L  E K FL+   S LDPATT  L++ HGR +E +FYATL+EDY++V+ +H   H  ++ +A+E+LR  P  KVE L YKYS  L+   P    E W
Sbjct:  494 VALKFLEKETR---DSLLLFLLQKLKSLG---NDEKTQKTVLCSWIVELFLDKFNVMK--GSAQDVDAHANLLFEFKQFLQDQKSHLDPATTFNLIASHGRTDELVFYATLIEDYEKVVTYHV--HRGEYGAAIELLRSVPTSKVEELYYKYSPELIIHKPKEVYEAW 651
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: A0A6G0XL45_9STRA (Pep3_Vps18 domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XL45_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.000e-28
Identity = 68/171 (39.77%), Postives = 101/171 (59.06%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQERE---EAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +AL+FME        AL T+LL++L   +L   E K Q T+LCTW+ EL+L  F  +    + + +   +   +L  E K FL+     LDPATT  L++ HGR +E +F+A+L+EDY++V+ +H   H  ++ +A+E+LR AP  KVE L YKYS  L+ A P    E W
Sbjct:  497 VALRFMEAKA---TNALHTFLLKKL---ALTSVEDKTQATVLCTWIVELYLDKFNDITAMSETDVDRTIDMHANLLFEFKQFLQDQKRHLDPATTFNLIASHGRTDELVFFASLIEDYEKVVTYHI--HRGEYGAAIEILRGAPTQKVEELYYKYSPELIIAKPKEVFEAW 659
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Match: F0W1U5_9STRA (Vacuolar protein sortingassociated protein 18 putat n=2 Tax=Albugo TaxID=65356 RepID=F0W1U5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.010e-28
Identity = 68/168 (40.48%), Postives = 97/168 (57.74%), Query Frame = 1 
Query:    1 LALKFMECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFTYLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEALFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSASLMAADPAGTIETW 504
            +ALKF+E D      AL+ +L ++L+ L     + K Q+T+LC+W+ ELFL  F  L      +  +A  +L  E K FL+     LDPATT  L++ HGR +E +FYATL+EDY++V+ +H   H  D+  A+E+LR     KVE L YKYS  L+   P    E W
Sbjct:  512 VALKFLEKDTR---DALRIFLAQKLKTLD---PDEKTQKTVLCSWIVELFLDKFNVLK--GTAQDVDAHANLLFEFKQFLQDQKQHLDPATTFQLIASHGRPDELVFYATLIEDYEKVVTYHI--HRGDYSGAIEILRSVQASKVEELYYKYSPELIVHKPKELYEAW 669
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13884.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI29_ECTSI2.130e-9085.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH0_9PHAE4.000e-8985.88Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
A0A196SHF3_BLAHN1.970e-3344.05Vacuolar protein sorting-associated protein 18 n=2... [more]
A0A836CAW5_9STRA1.280e-3245.40Pep3_Vps18 domain-containing protein n=1 Tax=Tribo... [more]
A0A1V9ZE02_9STRA7.090e-3140.48Vacuolar protein sorting-associated protein 18 n=1... [more]
A0A485KTJ2_9STRA4.710e-3041.52Aste57867_11642 protein n=1 Tax=Aphanomyces stella... [more]
UPI00071141C81.140e-2942.26hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
K3WGY8_GLOUD7.370e-2939.88Pep3_Vps18 domain-containing protein n=1 Tax=Globi... [more]
A0A6G0XL45_9STRA1.000e-2839.77Pep3_Vps18 domain-containing protein n=2 Tax=Aphan... [more]
F0W1U5_9STRA1.010e-2840.48Vacuolar protein sortingassociated protein 18 puta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13884contigH-canaliculatus_F_contig13884:347..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue7e-73
Seed eggNOG ortholog2880.D8LI29
Preferred nameVPS18
KEGG koko:K20181
KEGG Pathwayko04138,map04138
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090087,GO:0090130,GO:0090132,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size507
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13884.3081.1prot_H-canaliculatus_F_contig13884.3081.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13884 362..1612 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.033734-UTR-H-canaliculatus_F_contig13884:346..3611622929132.033734-UTR-H-canaliculatus_F_contig13884:346..361Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13884 347..361 +
1696845689.4954135-UTR-H-canaliculatus_F_contig13884:346..3611696845689.4954135-UTR-H-canaliculatus_F_contig13884:346..361Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13884 347..361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.0478303-CDS-H-canaliculatus_F_contig13884:361..5301622929132.0478303-CDS-H-canaliculatus_F_contig13884:361..530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 362..530 +
1696845689.5087574-CDS-H-canaliculatus_F_contig13884:361..5301696845689.5087574-CDS-H-canaliculatus_F_contig13884:361..530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 362..530 +
1622929132.0706925-CDS-H-canaliculatus_F_contig13884:985..12181622929132.0706925-CDS-H-canaliculatus_F_contig13884:985..1218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 986..1218 +
1696845689.5175364-CDS-H-canaliculatus_F_contig13884:985..12181696845689.5175364-CDS-H-canaliculatus_F_contig13884:985..1218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 986..1218 +
1622929132.0860937-CDS-H-canaliculatus_F_contig13884:1522..16121622929132.0860937-CDS-H-canaliculatus_F_contig13884:1522..1612Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 1523..1612 +
1696845689.5259638-CDS-H-canaliculatus_F_contig13884:1522..16121696845689.5259638-CDS-H-canaliculatus_F_contig13884:1522..1612Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13884 1523..1612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13884.3081.1

>prot_H-canaliculatus_F_contig13884.3081.1 ID=prot_H-canaliculatus_F_contig13884.3081.1|Name=mRNA_H-canaliculatus_F_contig13884.3081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MECDDGWRATALKTYLLERLRHLSLKQGEYKMQRTMLCTWLTELFLRGFT
YLPLAPDQEREEAETSLAEELKSFLRGYASALDPATTMALLSKHGRGEEA
LFYATLVEDYDRVLAHHANGHDADHESALEVLRKAPFDKVEPLVYKYSAS
LMAADPAGTIETWF
back to top

mRNA from alignment at H-canaliculatus_F_contig13884:347..1612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13884.3081.1 ID=mRNA_H-canaliculatus_F_contig13884.3081.1|Name=mRNA_H-canaliculatus_F_contig13884.3081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13884:347..1612+ (Hapterophycus canaliculatus Oshoro5f female)
TTAGCTTTGAAGTTCATGGAGTGCGACGACGGGTGGAGGGCGACTGCGCT
CAAGACCTACCTGCTCGAGCGGCTGCGGCACCTGTCGCTGAAGCAGGGCG
AGTACAAGATGCAGCGGACCATGCTGTGCACCTGGCTGACGGAGCTCTTT
CTGAGAGGGTTCACTTACCTCCCGCTTGCTCCGGGTACCGGTAAGAGGAA
GGGCAGACAGACAGGCAGAAAGACAGACAGATAGGCAGACAGAGACACAG
AGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGATAGAGACAGAGATGAAG
ACAGAGGCAGAAACAGACAGATAAGACAGAGGAGAGAGACAGACAGACAG
ACAGACAGAAAGGTATGTCTGTTCTCACGGTGCCTTGCCGAGGGTATCAA
GCATGTGACCGGAGATTTGTCTTTCGTTGATGACGTTGAGCGTCTACTTG
AGAGGGACGGCAGAGACGAGATAAATGTTAGATAGGACGCGATGTCGCGC
TTTACGGAAAAGGGGGGCGCTCCAAGAGTCAGCATCCCTTTAGGCAAATC
TCGAGCCCGTCGAATGATTGATTGCGTGCGGCAAGGTGCCGAAAGACGCA
CGGAACCCGACCCCTCCTCCACCCGCCGCGCGCCAACAGACCAAGAGCGG
GAGGAAGCGGAGACCTCGCTCGCCGAGGAGCTGAAGTCCTTCCTGCGGGG
CTACGCGTCGGCGCTCGACCCGGCGACGACCATGGCGCTGCTGTCCAAGC
ACGGCCGCGGCGAGGAGGCATTGTTCTACGCCACGCTGGTGGAGGACTAC
GACAGAGTGCTTGCGCACCACGCGAACGGCCACGACGCAGACCATGAGTC
CGCCCTGGAAGTGCTAAGGAAGGTGGGGATGGCGGGGGGGGGGGGATTGT
TGGTCAGCTGTTTGAACGTGATGTGCATGCACGCGCGAAAAAATACGTAC
GGATGACAAGTGAGATGTCGCTAAAAGAAACTATCCTGCCTCACGCCTTC
CCCCCCTCCCCCGCGGCCCGGTGTTGGCCATGCGAAGCTTTTGGTCTATA
CGTAGTCCGCATGCCTCGTCGCGTCTCGTGTGGGGTGTATGACGCCAGGC
TCCGCTGGGTGACTGCCGTAACAAAGGAACCATTCTCGCTGATTTGCGTC
CGCAACGAAACTTAAAATCTGAGCAGGCACCGTTCGACAAGGTGGAGCCG
TTGGTGTACAAGTACAGCGCCTCTCTCATGGCGGCCGACCCTGCCGGGAC
GATTGAAACCTGGTTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13884:347..1612+

>mRNA_H-canaliculatus_F_contig13884.3081.1 ID=mRNA_H-canaliculatus_F_contig13884.3081.1|Name=mRNA_H-canaliculatus_F_contig13884.3081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13884:347..1612+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTGCGACGACGGGTGGAGGGCGACTGCGCTCAAGACCTACCTGCT
CGAGCGGCTGCGGCACCTGTCGCTGAAGCAGGGCGAGTACAAGATGCAGC
GGACCATGCTGTGCACCTGGCTGACGGAGCTCTTTCTGAGAGGGTTCACT
TACCTCCCGCTTGCTCCGGATGGAGTGCGACGACGGGTGGAGGGCGACTG
CGCTCAAGACCTACCTGCTCGAGCGGCTGCGGCACCTGTCGCTGAAGCAG
GGCGAGTACAAGATGCAGCGGACCATGCTGTGCACCTGGCTGACGGAGCT
CTTTCTGAGAGGGTTCACTTACCTCCCGCTTGCTCCGGACCAAGAGCGGG
AGGAAGCGGAGACCTCGCTCGCCGAGGAGCTGAAGTCCTTCCTGCGGGGC
TACGCGTCGGCGCTCGACCCGGCGACGACCATGGCGCTGCTGTCCAAGCA
CGGCCGCGGCGAGGAGGCATTGTTCTACGCCACGCTGGTGGAGGACTACG
ACAGAGTGCTTGCGCACCACGCGAACGGCCACGACGCAGACCATGAGTCC
GCCCTGGAAGTGCTAAGGAAGACCAAGAGCGGGAGGAAGCGGAGACCTCG
CTCGCCGAGGAGCTGAAGTCCTTCCTGCGGGGCTACGCGTCGGCGCTCGA
CCCGGCGACGACCATGGCGCTGCTGTCCAAGCACGGCCGCGGCGAGGAGG
CATTGTTCTACGCCACGCTGGTGGAGGACTACGACAGAGTGCTTGCGCAC
CACGCGAACGGCCACGACGCAGACCATGAGTCCGCCCTGGAAGTGCTAAG
GAAGGCACCGTTCGACAAGGTGGAGCCGTTGGTGTACAAGTACAGCGCCT
CTCTCATGGCGGCCGACCCTGCCGGGACGATTGAAACCTGGTTCGCACCG
TTCGACAAGGTGGAGCCGTTGGTGTACAAGTACAGCGCCTCTCTCATGGC
GGCCGACCCTGCCGGGACGATTGAAACCTGGTTC
back to top