mRNA_H-canaliculatus_F_contig1387.3071.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1387.3071.1
Unique NamemRNA_H-canaliculatus_F_contig1387.3071.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1387.3071.1 vs. uniprot
Match: D8LHA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHA9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.180e-36
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 MPPIHWHKLPLRQFISHEIKRDGFMPFFIGMGVSGFLCGILPSLGFTDEDRKNSVYYQQRMRTMKYEDH 207
            MPP+HWHKLP RQ ISHEI+RDGF PFFIGMG+S FLCG++PS+GFTDEDRKNSVYYQQRMRTMKYEDH
Sbjct:    1 MPPVHWHKLPWRQLISHEIRRDGFKPFFIGMGISAFLCGVVPSIGFTDEDRKNSVYYQQRMRTMKYEDH 69
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BLAST of mRNA_H-canaliculatus_F_contig1387.3071.1 vs. uniprot
Match: W4G1R7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G1R7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.030e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   10 IHWHKLPLRQFISHEIKRDGFMPFFIGMGVSGFLCGILPSLGFTDEDRKNSVYYQQ 177
            + WHKL L  FI HE+KRD F PFF G   S F+CG+LP+LG +DED+  SV++Q+
Sbjct:    7 VRWHKLGLGNFIVHELKRDAFRPFFYGGIASFFICGVLPTLGASDEDKAKSVFWQR 62
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BLAST of mRNA_H-canaliculatus_F_contig1387.3071.1 vs. uniprot
Match: A0A3L6VC98_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VC98_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.490e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   10 IHWHKLPLRQFISHEIKRDGFMPFFIGMGVSGFLCGILPSLGFTDEDRKNSVYYQQ 177
            + WHKL L  FI HE+KRD F PFF G   S F+CG+LP+LG +DED+  SV++Q+
Sbjct:   66 VRWHKLGLGNFIVHELKRDAFRPFFYGGIASFFICGVLPTLGASDEDKAKSVFWQR 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1387.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHA9_ECTSI2.180e-3685.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4G1R7_9STRA7.030e-1355.36Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A3L6VC98_9STRA3.490e-1255.36Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1387contigH-canaliculatus_F_contig1387:6981..11881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D8LHA9
EggNOG OGs2E2RW@1,2S9YQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001210.1
Exons2
Model size1982
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1387.3071.1prot_H-canaliculatus_F_contig1387.3071.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1387 8753..11881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.4805357-UTR-H-canaliculatus_F_contig1387:6980..87521622929128.4805357-UTR-H-canaliculatus_F_contig1387:6980..8752Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1387 6981..8752 -
1696845689.1374772-UTR-H-canaliculatus_F_contig1387:6980..87521696845689.1374772-UTR-H-canaliculatus_F_contig1387:6980..8752Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1387 6981..8752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.494589-CDS-H-canaliculatus_F_contig1387:8752..88671622929128.494589-CDS-H-canaliculatus_F_contig1387:8752..8867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1387 8753..8867 -
1696845689.1524792-CDS-H-canaliculatus_F_contig1387:8752..88671696845689.1524792-CDS-H-canaliculatus_F_contig1387:8752..8867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1387 8753..8867 -
1622929128.508542-CDS-H-canaliculatus_F_contig1387:11786..118811622929128.508542-CDS-H-canaliculatus_F_contig1387:11786..11881Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1387 11787..11881 -
1696845689.1611505-CDS-H-canaliculatus_F_contig1387:11786..118811696845689.1611505-CDS-H-canaliculatus_F_contig1387:11786..11881Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1387 11787..11881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1387.3071.1

>prot_H-canaliculatus_F_contig1387.3071.1 ID=prot_H-canaliculatus_F_contig1387.3071.1|Name=mRNA_H-canaliculatus_F_contig1387.3071.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MPPIHWHKLPLRQFISHEIKRDGFMPFFIGMGVSGFLCGILPSLGFTDED
RKNSVYYQQRMRTMKYEDH*
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mRNA from alignment at H-canaliculatus_F_contig1387:6981..11881-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1387.3071.1 ID=mRNA_H-canaliculatus_F_contig1387.3071.1|Name=mRNA_H-canaliculatus_F_contig1387.3071.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4901bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:6981..11881- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCCGATCCACTGGCACAAGCTTCCCCTGAGACAATTCATCTCGCA
TGAGATCAAGCGCGATGGCTTCATGCCCTTCTTCATCGGAATGGGGTGAG
TGCAAAAACAGGAGGGGCCACACGCGACATCGTTTCGTCGACGATGATGG
GCGTGATGAGCGGCGAGAGTCAGGCACAGGGCAGGCAGCAGGCGAAGTTT
CCGGTGTCTCGCACAAGTCAGTCTCTTAGCAGCGGGTAGCAACATGTGTG
GAAAGAGAGTGGCCGGAAACGGCGAATGCCGTGGTGTTTTATCAAGGCGC
AGACGGAGAGTACTGAAATCTGCGAGGAGGGAACACTGGTTTGTTTCCCT
TCCCAGGAGGCAGAACTTGACGACGTTTCGAAGCAGACGCACCCGCCGGC
GACTTGCGCCGTCGTTGCGCCGTCGCGCCGACTGCCTATGCCTCTCGGCT
GGCACGCCGTCAATGTGCAGCGCGTCCCTTACGATACATCTGCGGGCTAG
TCAGACTTCCGCTTGCGGGCCGGAGCACAACAAGAGCTTGCGCATCGTGC
CGTGCCAGCCGTCGTTCTGCAAGATGCACTCCAGGCCCCCAAATGTTTCG
GGTTTTGAGGCATGGTTTTGGAGGGTTCTGTAAACGAAACCCCTTCATCA
AAGACAGGCACAGCGGCACAGCAAAGCGATTTCCGTCACAACAAGCCGAT
TTTCGTCTGCTGACCGCGAGCATACCTCTTCCGAGGTGCCTGCGTGTGTA
CCTTTCCGCCGCTTCCGAGTGCGGAAGGCATCAGGGCAAACTGTTAGATT
TCTATTGTGTAATTGTACACTTGTTTTGGGGTATCGCAGCACGGCTTTGA
CTCGTGCTCAGTCTTCTCCAAAGAAAGTCGACGGTTGGTGAGTTTTCACA
TGTATACGTTTGGTATCCTATGAAAGAAACCGGCTTCTTAGTATCCCTAG
ATAGAGGCATAGAGGCGCAGTCCCAGAGAGTACCGCTGAAACAGCCTCTA
CGTCTGCAACCTTGGGAACAGCCGCCTTTAACATGATTTTGCTACTCTAC
CCCTGAAGCCCAACATCGAATGCTCCACCTAATCGAACTGATGTTTCGAT
CTTTCGTCTTCAGCAAAGTACAGCAGTAGTCCCACAACGACAGGACGACC
GCTCTCTTCCCCACGGACACGTTCAGGTGCTTGTGGGCATGGTTTTCGTA
GGTCGGAACACAGCTGAGAGCCTCTCAGGTGGACAGTGTAACCCTTGTCA
TCCACGGAATTTTCTGCCCCCCGCCCCCCCGCCGAAGGCTGCTTTTGCCA
TTTGTTTCACGGTGGGAGGTGCCGCCCCCGCCGTTCAGGAGCCGTTTCTC
CAAGCGCCATGCCAGTACTTCGCCAAGAGGGAGGTTGTCGTGCACATCGA
AAATAGTTGGCGGACATCATTAAGATCTATCATCTAGACGTGTCCTTTGC
CAAGCACACCCGTGGCGGTGTGCAGCTGGCGCGTTGTGTATGCCTAGGTC
GTCAAGCTGTACCAGGGAAGCAGTGAAACAGTTCTGGTGTATCTGGTGTC
CGGTGTGTTGTGGTGCGACGCGAGCTGCGACCAAGGTCGACGAGGCGCCG
CTCTTGATGGAGAACTTCAGACACCCTCTTGCTGCGGACTCCATCATACC
TCCGCATCTCCTTTCCCTATGGCAAGAGCAGTGATCCGAAAATCCTTCAA
GAGAAAATCTAGTCCAGAAACGTGACGTTGTAGCCAGGTTCACGCCCCGC
GGCTGTGCCCGTGAGCCGGGTAGTGCGGACAGCATCTCCTCCCGCCGCGC
CCACCGTACCAGCGGTGTCTTTTTGGTTCTGTTGGCTGCGAGTTCAAGCA
CACAGACGAGTGCCCGCTGTCTTGCGGACAGCTGGACTAACAAATACAAG
TAAATTCATGGGTACTGCTCCATTTACGTACCGTATTCGACACAAGATAG
CACCCCCCCGGTGATACATTTGAGCGCTCGAAAATATTTTCACCGGATGT
GGTATCCTGTGGGGAGTGTGGTATCTTCTGTCGCCATCTTACTTGGTATT
AGACGAAGGCGCTATATTTCGAGCCACAAAAATTATCACCGGGGTGTCGT
ATTCTGTGGGGGGTGTGGTATCTTATGTGGGTGTGGTGTCTTGTGTGGAT
TTCAAGTACGGTATTTACGCTGTATTTTACGCCCTGACGTGTTGGCTGTG
CTCGTTCTACTTTGGACGTTGTTGCCCACGCGCGAGCACGCCAGGGAATC
GTAGGGCGGGGTTCCGCTCCGTCCGCCGCGGCGGCGCAAGAGAACACGCA
AGAGAGCATTCGACAGAAAATTGCCCTCTCGTTTCGATACCGAGGAGGAA
ACACCGGAAATGTCCATCCGGGACTGCGAAGAAGAAAGCACGATCCGCTG
CCCAGCTGTTCTGCCTTCAAAGAGGGGTACTCGTGCCTGCAAGCACAACT
GCCGCAGTCTTCTTTCGCTCTCCTCAACGCTCAGCCGTCTTGCCGCCAAC
GGGGCATGTGCTGAAGATGGTCCTGGTGGTGCTTTGGCTCTCGTTGTTGG
CCTTCTTATTTCGGCGCACAACAGTGTTTTCGACCGCAGTTCGACCTGAT
GGCCTTTCCACGGCTGCCCTGCCCTTCCAGCGGGTCGGTCTTGCTTGGAT
GTGGCATGCGGCGCAGGTCGGTCTAATATTTTTGGTTGACCGTCATCTGT
ACAGGGGGGAGCGACGGACTCTTCTCAAAACCTGAAGTCTGTGCGTCTTG
CATGCAAACGAGCATCTTGCGTGCAAACGAGCACCTCGCGCTCACGCACG
AAGAGGCTAGGTTACCGCGTTCCCACCCGCTGCTGACTTTGTCTCAATCT
GCGCGCCCCCTGCCGTTCTATCGAGCGCTCGGCAACGATTGCGCGTCGCT
CGGACACCCCATTTTGTTAACCGTGCCCCTCCGTCTCCTCCCGCCCTCCC
CGCCCCCCCACTCTCTCATCGGATTTCGCCGTTCCCCGCCTTTCGAACGA
AAAATCCGGACCAGGGTTTCCGGGTTCCTGTGCGGCATTTTGCCCTCGTT
GGGTTTCACCGACGAGGACCGCAAGAACTCGGTGTACTACCAACAGCGCA
TGCGGACCATGAAGTACGAAGACCATTAGTCACTCTATTGAGTAACCCGC
CCTCTCCCTGCTGAGGGGCGTTTCGGCGAGGCGGGTGGGGGGGGGGGAGT
TGTGGGGGCTCGAGGGAGAGGGCGTCGAAGCGAAGCACTCGTTAGGTAGG
TGTGACTTGATGGGGTGCAACAGGCAGGTGCTCGAGCGGCGCGAGGATGC
ACCGATGGGCGTAGGTAATGATGACCGGTTTGGAGTGGCGTACGGGGGCA
GATATCTCGTGCTTTTTGGTGGCCTGCGCCTGCCGTTCGGTAACAAAAGT
CCTGGCCGCGTTGTCTGCCCCGAGCGCGCGGCCGAGTCGATGAATCTGCC
GCAGAGATCCGGTCCGGTTGGTGTCGGGGAAGGGCACGTTGCGTAGTCGT
CGGGCCTTGCTTTGGATAGCTTGGCTCGATGGCGGTGGAATGCGAGAACC
GCGGGGGGGAAGGGGTTGTCAGCTGGCTAGTGCTGATGACGACCGACGGC
CTCCGGGAAGAAGAAATGCGCGTTCTTCTAGCTTTCGCTTGGCGATTGTA
CGCGGTTTGCTGATTGAAGAACGCCTCATTTGGGCGGGTTCAGGGGTATG
GCGGAGGGGGGGGGGGTTCATGGTGCGGAGGGGGAAACGGCCTGTTCCAG
CGCGGGGGCCAGCAACGAACCAAGCGGATTTAACGAGAAAAAGTTTTGAA
CAGACCAGGTCTCGGGCGTCTTAACTGATCTCGTGTCTTGCGCCCCATCC
GCGCTTCCCCACCGTGTTAAGGCAATTCCTGTTCTGAGCGGCGTCTGTGC
CCCGTGCCCACAGCAGTGGCGCACGCGTATTGGGTATTTATTTGTTGCGT
TTCGATCTGGTGTTGAGTCGACAGCTGTGGCGTTCCGTAGAACAAGCGGG
GCTGCCTGCCACGGCGAATCGCGAGCATCTAATCGCGCCTGCTGCGGGTG
TGGGGTGCTTGCTTAGGTCGCCACTCGGTTTTCCTGAACCGGGGTCTGGC
GTAGCCCTACATTACACCCCGAACTACTCCGAGTACGTCGTTTCGTTTCG
TTTCGCACCGCCACGTGGCATCTCCGTCCTTGCCACGAGCTCGTCTTGGA
TGACTTCGACGCCGGAGGCTTGGGAGCGGGCAGCAAGCAGCAAGGCGTCG
GCGGGAAACATAACAGCCGTGGTAGTTTCTCTTATACGCTCCCATACCCT
GCGTGTGTGCGTTGTTTTCGAATGCGTCATGCTTCCTGCTCTCTGGCGTG
GTCCCCGCTTCTTCGTCCTGCCTGGCCTGCTGTGATGCCCTTTGTTCTCT
TCATACGCTGGAGAACGGGATGTACCGTAAGGATCGGGGTCTTGGCACGT
CTCGGCACAGGGGTGCGGTGTTTTTTCCCAGCCCGATATCTCGACACACA
ACGGAGAGGGTTCCATCGGGGAAGATCTGGTCCCGTGCGTTCCGTTCCGG
ACTAAAAGTCTTTAACGTCTGCGCCCTCCCCGTTGTCCAGATATCGGGCC
GCGATAAAACATCGCACCCCGGTGCGAAGACTCCGATCTTACCGTAGGTA
CAAGTGGTTGTGTGTCTACTCGTAGGCGCCAGGGGAGGAAAACTATATGC
GGGCCAAGTCACCCTCTTGTCGCTCTCGGTCGCGCTCCTTCCGACCTCTT
ACTCCCACCCTCCCCCAAAAAATCGTTATGAGAGGTGTCGAATTGTACTC
GTATCTCGCTCTGTACCAGCCTGCCTCTGGTCGAGTGCACTACTGTACTT
GTAAAAGAAGAAAGTCGTTCGCATTCTCAGTACGTGAGCTTCTCCGCTTC
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1387:6981..11881-

>mRNA_H-canaliculatus_F_contig1387.3071.1 ID=mRNA_H-canaliculatus_F_contig1387.3071.1|Name=mRNA_H-canaliculatus_F_contig1387.3071.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:6981..11881- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCCGATCCACTGGCACAAGCTTCCCCTGAGACAATTCATCTCGCA
TGAGATCAAGCGCGATGGCTTCATGCCCTTCTTCATCGGAATGGGATGCC
TCCGATCCACTGGCACAAGCTTCCCCTGAGACAATTCATCTCGCATGAGA
TCAAGCGCGATGGCTTCATGCCCTTCTTCATCGGAATGGGGGTTTCCGGG
TTCCTGTGCGGCATTTTGCCCTCGTTGGGTTTCACCGACGAGGACCGCAA
GAACTCGGTGTACTACCAACAGCGCATGCGGACCATGAAGTACGAAGACC
ATTAGGGTTTCCGGGTTCCTGTGCGGCATTTTGCCCTCGTTGGGTTTCAC
CGACGAGGACCGCAAGAACTCGGTGTACTACCAACAGCGCATGCGGACCA
TGAAGTACGAAGACCATTAG
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