mRNA_H-canaliculatus_F_contig13806.3029.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13806.3029.1
Unique NamemRNA_H-canaliculatus_F_contig13806.3029.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13806.3029.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.960e-17
Identity = 89/154 (57.79%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:    1 LKKTAAAHELKLRSLRQEHEKIKSGLQRQLEMRPGATPGAHAAVVXXXXXXXXXXXXXXXXXXXXXXXXXELEEGEGRERQDPAG----------------------RIAELEKELSHVRSFYTRKLKEVERRAENQMRALKRG---IGGGGSR 387
            L ++ AA ELKLR+LRQEHE++K+GLQRQLE R G   GA AA  XXXXXXXXXXXXXXXXX              GR  Q   G                      R+AELEKEL+HVRSFYTRKLKEVERRAENQMRALKRG    G GGSR
Sbjct:   92 LARSTAASELKLRALRQEHERVKNGLQRQLETRVG---GAAAAAXXXXXXXXXXXXXXXXXXVCGRPGVATGGGSGGRSPQGRQGEGXXXXXXXXXXXXXXXXXXXDRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGAGGSR 242
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BLAST of mRNA_H-canaliculatus_F_contig13806.3029.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.290e-15
Identity = 101/180 (56.11%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 LKKTAAAHELKLRSLRQEHEKIKSGLQRQLEMRPGATPGAHAAVVXXXXXXXXXXXXXXXXXXXXXXXXXELEEGEGRE-----------------RQDPAGRIAELEKELSHVRSFYTRKLKEVERRAENQMRALKRGIGG---GGSRPATADPAYKRIGGG-------SVVTRRGIDG 459
            L ++ AA ELKLR+LRQEHE++K+GLQRQLE R G   GA     XXXXXXXXXXXXXXXXXXXXXXXXX     +GR+                       R+AELEKEL+HVRSFYTRKLKEVERRAENQMRALKRG  G   GG       PA     GG       S    RGIDG
Sbjct:  170 LARSTAASELKLRALRQEHERVKNGLQRQLETRVG---GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRISQGRQGXXXXXXXXXXXXXXXXXXXXXDRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTRAGGVSALGIAPAAATAAGGEPDADGSSSRGARGIDG 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13806.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRE4_ECTSI4.960e-1757.79Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A6H5KNC7_9PHAE1.290e-1556.11Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13806contigH-canaliculatus_F_contig13806:3..1479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size918
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.7929857-CDS-H-canaliculatus_F_contig13806:2..2541622929122.7929857-CDS-H-canaliculatus_F_contig13806:2..254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13806 3..254 +
1696845686.7904081-CDS-H-canaliculatus_F_contig13806:2..2541696845686.7904081-CDS-H-canaliculatus_F_contig13806:2..254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13806 3..254 +
1622929122.811246-CDS-H-canaliculatus_F_contig13806:814..14771622929122.811246-CDS-H-canaliculatus_F_contig13806:814..1477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13806 815..1477 +
1696845686.8015306-CDS-H-canaliculatus_F_contig13806:814..14771696845686.8015306-CDS-H-canaliculatus_F_contig13806:814..1477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13806 815..1477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13806.3029.1prot_H-canaliculatus_F_contig13806.3029.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13806 3..1477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13806.3029.1

>prot_H-canaliculatus_F_contig13806.3029.1 ID=prot_H-canaliculatus_F_contig13806.3029.1|Name=mRNA_H-canaliculatus_F_contig13806.3029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=305bp
LKKTAAAHELKLRSLRQEHEKIKSGLQRQLEMRPGATPGAHAAVVVGGGG
GGGGGGHSPQQQQERQEQQQELEEGEGRERQDPAGRIAELEKELSHVRSF
YTRKLKEVERRAENQMRALKRGIGGGGSRPATADPAYKRIGGGSVVTRRG
IDGGGEEKEDGWGGIAGPWQAPRSTPANGAAAAGAMHVGQRGGEPHSNAR
GEFADSRARSPGRLAGDGGEDGPGRGRDRGEIQEGRREQRQGVSRRPGDF
APPRGTGTSSVAEEEEERWAEKDRGRWRRRPLPEDSSRARGGGARGGGDR
DGVSS
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mRNA from alignment at H-canaliculatus_F_contig13806:3..1479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13806.3029.1 ID=mRNA_H-canaliculatus_F_contig13806.3029.1|Name=mRNA_H-canaliculatus_F_contig13806.3029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13806:3..1479+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAAGAAGACAGCGGCCGCCCACGAGCTGAAGCTGCGGTCCCTTCGGCA
AGAGCACGAGAAGATCAAGAGCGGCCTCCAGAGACAGCTAGAGATGAGGC
CCGGGGCGACTCCCGGTGCTCATGCTGCCGTGGTGGTGGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGGCATAGTCCCCAGCAGCAGCAAGAGCGGCAGGA
ACAGCAGCAGGAGCTGGAGGAGGGAGAAGGGCGGGAGCGACAGGACCCGG
CGGTGAGGCTTTTGGTCCGTTGGATCTTACGGTGGAGATGGAGATGGAGA
CGGTCTTTAGTGGTCCACACACCCTTTCGCTCCTTAAAGTTCGGTGGATC
GGAAGCGGGTGGAGCGTGGAGTGTACGGGTAGCGGGGGGGGCGGTCTGGT
GCAACGCGGTGGTGCGTGAATGGCCGATCGGCGGACGGTCTCTTTGGGCA
ATCTGCCGTTGCCTTCATGTTCGTCTTCTTCGCCGTAACATAATTTTTTT
TGTGAGAGCCCCACTCGCGGCAACCCTTGGACCGCCGTGGTGGTCATGGT
CACCTTGTCAGTGGTGAACCAGCTTCTGTGACGCAAAAATATCAACTCCC
CCCCGCCCCCACCCCCGCCCCCCCTATCTCTTTCTCCCCCGCGCCCCCCA
CCCCCCCCCTCCAGAAAACAAACTTGCGTTTCACCTCCCCCTCCCCCCCC
CGTCTCCCCGAAAAAATCACGCCGTCGGCTATTTGGCACGCCCACGCACC
CCATTCCGTGCCAAACAACGCCACGCCACGCTTCTCCGTGCCATGCCATG
ACATGATGCCAGGGTCGCATCGCCGAGCTGGAGAAGGAACTGTCTCACGT
GCGCTCGTTCTACACGCGCAAGCTCAAGGAGGTGGAGAGGAGGGCGGAGA
ATCAGATGCGAGCCCTCAAGCGGGGAATCGGCGGCGGCGGCAGTAGGCCC
GCTACGGCTGACCCTGCATACAAAAGAATCGGCGGCGGCAGCGTTGTGAC
GCGGCGTGGTATCGACGGCGGCGGCGAGGAAAAAGAGGACGGGTGGGGCG
GAATAGCAGGTCCTTGGCAAGCTCCTCGATCGACGCCGGCGAACGGCGCC
GCCGCCGCCGGCGCGATGCACGTCGGGCAGAGAGGAGGGGAGCCCCACAG
CAACGCCCGGGGAGAGTTCGCCGACTCACGAGCGCGATCTCCGGGGAGGC
TCGCCGGTGACGGCGGCGAAGACGGCCCCGGTCGCGGGAGAGATCGCGGA
GAGATACAAGAAGGGCGTCGAGAGCAACGCCAGGGGGTTTCAAGAAGGCC
GGGCGACTTTGCGCCGCCGCGGGGGACGGGGACGTCCTCCGTCGCCGAGG
AGGAGGAGGAAAGATGGGCGGAGAAGGACCGAGGGCGGTGGCGGAGGCGG
CCTCTCCCTGAGGACAGCAGCCGCGCCAGAGGCGGCGGTGCGCGTGGCGG
CGGCGACCGCGACGGCGTCTCGTCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13806:3..1479+

>mRNA_H-canaliculatus_F_contig13806.3029.1 ID=mRNA_H-canaliculatus_F_contig13806.3029.1|Name=mRNA_H-canaliculatus_F_contig13806.3029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13806:3..1479+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAAGAAGACAGCGGCCGCCCACGAGCTGAAGCTGCGGTCCCTTCGGCA
AGAGCACGAGAAGATCAAGAGCGGCCTCCAGAGACAGCTAGAGATGAGGC
CCGGGGCGACTCCCGGTGCTCATGCTGCCGTGGTGGTGGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGGCATAGTCCCCAGCAGCAGCAAGAGCGGCAGGA
ACAGCAGCAGGAGCTGGAGGAGGGAGAAGGGCGGGAGCGACAGGACCCGG
CGCTGAAGAAGACAGCGGCCGCCCACGAGCTGAAGCTGCGGTCCCTTCGG
CAAGAGCACGAGAAGATCAAGAGCGGCCTCCAGAGACAGCTAGAGATGAG
GCCCGGGGCGACTCCCGGTGCTCATGCTGCCGTGGTGGTGGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGGCATAGTCCCCAGCAGCAGCAAGAGCGGCAG
GAACAGCAGCAGGAGCTGGAGGAGGGAGAAGGGCGGGAGCGACAGGACCC
GGCGGGTCGCATCGCCGAGCTGGAGAAGGAACTGTCTCACGTGCGCTCGT
TCTACACGCGCAAGCTCAAGGAGGTGGAGAGGAGGGCGGAGAATCAGATG
CGAGCCCTCAAGCGGGGAATCGGCGGCGGCGGCAGTAGGCCCGCTACGGC
TGACCCTGCATACAAAAGAATCGGCGGCGGCAGCGTTGTGACGCGGCGTG
GTATCGACGGCGGCGGCGAGGAAAAAGAGGACGGGTGGGGCGGAATAGCA
GGTCCTTGGCAAGCTCCTCGATCGACGCCGGCGAACGGCGCCGCCGCCGC
CGGCGCGATGCACGTCGGGCAGAGAGGAGGGGAGCCCCACAGCAACGCCC
GGGGAGAGTTCGCCGACTCACGAGCGCGATCTCCGGGGAGGCTCGCCGGT
GACGGCGGCGAAGACGGCCCCGGTCGCGGGAGAGATCGCGGAGAGATACA
AGAAGGGCGTCGAGAGCAACGCCAGGGGGTTTCAAGAAGGCCGGGCGACT
TTGCGCCGCCGCGGGGGACGGGGACGTCCTCCGTCGCCGAGGAGGAGGAG
GAAAGATGGGCGGAGAAGGACCGAGGGCGGTGGCGGAGGCGGCCTCTCCC
TGAGGACAGCAGCCGCGCCAGAGGCGGCGGTGCGCGTGGCGGCGGCGACC
GCGACGGCGTCTCGTCGGGTCGCATCGCCGAGCTGGAGAAGGAACTGTCT
CACGTGCGCTCGTTCTACACGCGCAAGCTCAAGGAGGTGGAGAGGAGGGC
GGAGAATCAGATGCGAGCCCTCAAGCGGGGAATCGGCGGCGGCGGCAGTA
GGCCCGCTACGGCTGACCCTGCATACAAAAGAATCGGCGGCGGCAGCGTT
GTGACGCGGCGTGGTATCGACGGCGGCGGCGAGGAAAAAGAGGACGGGTG
GGGCGGAATAGCAGGTCCTTGGCAAGCTCCTCGATCGACGCCGGCGAACG
GCGCCGCCGCCGCCGGCGCGATGCACGTCGGGCAGAGAGGAGGGGAGCCC
CACAGCAACGCCCGGGGAGAGTTCGCCGACTCACGAGCGCGATCTCCGGG
GAGGCTCGCCGGTGACGGCGGCGAAGACGGCCCCGGTCGCGGGAGAGATC
GCGGAGAGATACAAGAAGGGCGTCGAGAGCAACGCCAGGGGGTTTCAAGA
AGGCCGGGCGACTTTGCGCCGCCGCGGGGGACGGGGACGTCCTCCGTCGC
CGAGGAGGAGGAGGAAAGATGGGCGGAGAAGGACCGAGGGCGGTGGCGGA
GGCGGCCTCTCCCTGAGGACAGCAGCCGCGCCAGAGGCGGCGGTGCGCGT
GGCGGCGGCGACCGCGACGGCGTCTCGTCG
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