mRNA_H-canaliculatus_F_contig13722.2980.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13722.2980.1
Unique NamemRNA_H-canaliculatus_F_contig13722.2980.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 4.590e-51
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 PRDDGASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGMAPWGENPAEA 339
            PR +GASFLALKQTLLLSYCRE+CSYA+AK RG+AL GGG AGRLVELRTVMEKLRPMDRKLKYQTDK+LR+A S+        G   GDDDPLSFRPRPEGMAPWGE+P+ A
Sbjct:  160 PRHEGASFLALKQTLLLSYCREICSYAAAKARGEALGGGGAAGRLVELRTVMEKLRPMDRKLKYQTDKLLRVAASAGGSADGEVGGSGGDDDPLSFRPRPEGMAPWGEDPSTA 272
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A7SK02_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SK02_NEMVE)

HSP 1 Score: 84.0 bits (206), Expect = 1.370e-18
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGM 309
            G SFL +K  LLLSY   +  Y   K  GQ + G     RLVE+RTV+EKLRP+D+K+KYQ DK+++L T+  A GT        D+DPL FRP PE M
Sbjct:   13 GISFLEIKFHLLLSYLINVVYYILIKTEGQNIEGDPVVDRLVEIRTVLEKLRPIDQKMKYQIDKLVKLVTAGLA-GT--------DNDPLRFRPNPENM 102
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: UPI00106CD790 (neuroguidin-A-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CD790)

HSP 1 Score: 87.4 bits (215), Expect = 3.720e-18
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    7 DDGASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGM 309
            + G SFL +K  LLLSY   L  Y   K  G+++ G     RLVELRTVMEK+RP+D+KLKYQ DK++++AT+         G    ++DPL F+PRPE +
Sbjct:   67 EKGVSFLEMKFHLLLSYLINLVHYMLLKAHGKSIEGSPTVDRLVELRTVMEKIRPIDQKLKYQIDKLIKIATT---------GLAGQENDPLRFKPRPENL 158
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: UPI0018858E46 (neuroguidin-like isoform X1 n=4 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858E46)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-17
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGMAPWGENPAEAGA 345
            G SFL +K  LLLSY  +L    S K RG+++ G     RLVELRTV+E++RP+D+KL+YQ DK++R+AT+             G+ DPL F+P+P  +A   ++ A +G+
Sbjct:   70 GLSFLEMKNYLLLSYLADLTQVMSLKLRGRSIAGDASVDRLVELRTVLERIRPIDQKLRYQVDKLVRIATTGQL----------GEGDPLRFKPQPGNLASRLDDEAGSGS 170
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A0A6P8I5G4_ACTTE (neuroguidin-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I5G4_ACTTE)

HSP 1 Score: 85.5 bits (210), Expect = 1.490e-17
Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGMA 312
            G SFL +K  LLLSY   +  Y   K  G+ + G     RLVE+RTV+EKLRP+D+K+KYQ DK++++ T+    G +A     GD DPL F+P PE MA
Sbjct:   49 GISFLEVKTQLLLSYLINIVYYMLLKSDGEKIEGDSAIDRLVEIRTVLEKLRPIDQKMKYQIDKLIKMITT----GMTA-----GDSDPLRFKPNPENMA 139
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A0A7D9KFM2_PARCT (Neuroguidin isoform X2 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KFM2_PARCT)

HSP 1 Score: 82.4 bits (202), Expect = 3.490e-17
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGM 309
            G SFL +K  LLLSY  +L  Y   K  G+++       RLVELRTVMEK+RP+D+KLKYQ DK++++AT+         G    ++DPL F+PRP+ +
Sbjct:    1 GVSFLEMKFHLLLSYLIDLVHYMLLKSHGKSIEDSPTIDRLVELRTVMEKIRPIDQKLKYQIDKLIKIATT---------GLVGQENDPLRFKPRPDNL 90
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: C1E834_MICCC (Sas10 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E834_MICCC)

HSP 1 Score: 85.5 bits (210), Expect = 4.670e-17
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:   10 DGASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSS-NADGTSAEGAGDGDDDPLSFRPRPEGMAPWGENPAEAGA 345
            +G S+L  K  L+LSYC  +  Y   K  G+ ++      RLVE+RT +EKLRP+D+KLKYQ DK+L++A      +   A+GAG+   DPL FRP P+ +    +  AE GA
Sbjct:  318 EGISYLDTKHLLMLSYCINIAFYLLLKAEGRPVKDHPVVLRLVEIRTYIEKLRPIDKKLKYQIDKLLKMAKEGVTGEEEDADGAGE---DPLQFRPNPDALVSKVDEDAEEGA 427
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A0A6A4WEY9_AMPAM (Neuroguidin n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WEY9_AMPAM)

HSP 1 Score: 84.0 bits (206), Expect = 5.900e-17
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGMA 312
            G SFL +K +LLLSY  +L    S K  G+++ G     RLVELRTV+E++RP+D+KL+YQ DK++R+AT+             G+ DPL FRP+P  +A
Sbjct:   49 GLSFLEMKNSLLLSYLVDLSRVMSLKLHGKSIAGDAGIERLVELRTVLERIRPIDQKLRYQVDKLVRIATTGQL----------GESDPLRFRPQPGNLA 138
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: A0A2B4SXL7_STYPI (Neuroguidin n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SXL7_STYPI)

HSP 1 Score: 84.0 bits (206), Expect = 6.160e-17
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 PRDDGASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGM 309
            P   G SFL LK  LLLSY  +L  Y   K  G + +G     RLVE RTV+EKLRP+D+K+KYQ DKM++ AT+    G           DPL F+P PE M
Sbjct:   49 PTKKGVSFLELKFHLLLSYVIDLTYYLLTKTDGNSWQGDPAVDRLVEARTVLEKLRPIDQKMKYQIDKMIKTATTGVVSGAEI--------DPLRFKPNPENM 143
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BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Match: UPI00138FC27A (neuroguidin n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC27A)

HSP 1 Score: 84.0 bits (206), Expect = 6.540e-17
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:   13 GASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRTVMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRPEGM 309
            G SFL +K  LLLSY   +  Y   K  GQ + G     RLVE+RTV+EKLRP+D+K+KYQ DK+++L T+  A GT        D+DPL FRP PE M
Sbjct:   67 GISFLEIKFHLLLSYLINVVYYILIKTEGQNIEGDPVVDRLVEIRTVLEKLRPIDQKMKYQIDKLVKLVTAGLA-GT--------DNDPLRFRPNPENM 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13722.2980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J951_9PHAE4.590e-5176.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A7SK02_NEMVE1.370e-1849.49Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI00106CD7903.720e-1846.53neuroguidin-A-like n=1 Tax=Dendronephthya gigantea... [more]
UPI0018858E461.430e-1742.34neuroguidin-like isoform X1 n=4 Tax=Pollicipes pol... [more]
A0A6P8I5G4_ACTTE1.490e-1747.00neuroguidin-like n=1 Tax=Actinia tenebrosa TaxID=6... [more]
A0A7D9KFM2_PARCT3.490e-1745.45Neuroguidin isoform X2 (Fragment) n=1 Tax=Paramuri... [more]
C1E834_MICCC4.670e-1742.48Sas10 domain-containing protein n=1 Tax=Micromonas... [more]
A0A6A4WEY9_AMPAM5.900e-1745.00Neuroguidin n=2 Tax=Amphibalanus amphitrite TaxID=... [more]
A0A2B4SXL7_STYPI6.160e-1746.60Neuroguidin n=3 Tax=Pocilloporidae TaxID=46729 Rep... [more]
UPI00138FC27A6.540e-1749.49neuroguidin n=1 Tax=Nematostella vectensis TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13722contigH-canaliculatus_F_contig13722:1204..1822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.5e-40
Seed eggNOG ortholog2880.D7FH58
Preferred nameNGDN
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3117@1,KOG3117@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSas10/Utp3/C1D
Ec32 orthologEc-13_000850.1
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.338681-CDS-H-canaliculatus_F_contig13722:1203..13691622929113.338681-CDS-H-canaliculatus_F_contig13722:1203..1369Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13722 1204..1369 -
1696845683.7263718-CDS-H-canaliculatus_F_contig13722:1203..13691696845683.7263718-CDS-H-canaliculatus_F_contig13722:1203..1369Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13722 1204..1369 -
1622929113.357608-CDS-H-canaliculatus_F_contig13722:1643..18221622929113.357608-CDS-H-canaliculatus_F_contig13722:1643..1822Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13722 1644..1822 -
1696845683.7385917-CDS-H-canaliculatus_F_contig13722:1643..18221696845683.7385917-CDS-H-canaliculatus_F_contig13722:1643..1822Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13722 1644..1822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13722.2980.1prot_H-canaliculatus_F_contig13722.2980.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13722 1204..1822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13722.2980.1

>prot_H-canaliculatus_F_contig13722.2980.1 ID=prot_H-canaliculatus_F_contig13722.2980.1|Name=mRNA_H-canaliculatus_F_contig13722.2980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
PRDDGASFLALKQTLLLSYCRELCSYASAKGRGQALRGGGPAGRLVELRT
VMEKLRPMDRKLKYQTDKMLRLATSSNADGTSAEGAGDGDDDPLSFRPRP
EGMAPWGENPAEAGA
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mRNA from alignment at H-canaliculatus_F_contig13722:1204..1822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13722.2980.1 ID=mRNA_H-canaliculatus_F_contig13722.2980.1|Name=mRNA_H-canaliculatus_F_contig13722.2980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=619bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13722:1204..1822- (Hapterophycus canaliculatus Oshoro5f female)
CCTCGAGACGACGGAGCCTCCTTCCTGGCGCTGAAGCAGACGCTGCTGCT
GAGCTACTGCCGTGAGCTCTGCTCCTACGCCTCCGCCAAGGGTAGGGGGC
AGGCGCTGCGCGGGGGCGGGCCCGCGGGTAGGCTGGTGGAGCTACGGACA
GTGATGGAGAAGCTCCGGCCGATGGACAGGTGTGTGTGCGTGCGCGGGTT
TTTTCTTGGGAGGGAAAGGGCCAGCGGCAACCACTTTTGAGCCTCGTCGG
AGACTAAGTTCGGCGATCCAGGAGGATGGTGTCGAGCCCTTAGCAGCGAG
AGTATTTTTGTGGTGTCTCACCGAATCAGACGGGTCATGTAGGCCCACCC
GGGGCAGCACCTGCACCTACACCTCGCCTCCGTCGTCTCAAACGCTTTCC
TTCGGGCTGTATTCTCCTGTAATCTTCTCGTGCTCCTCGCCCTCCCCCTC
CAGGAAGCTTAAGTACCAAACGGACAAGATGCTGCGGCTGGCGACGTCCT
CCAACGCCGACGGCACCTCCGCGGAAGGGGCCGGGGACGGAGACGATGAT
CCCCTGAGCTTCAGGCCTCGGCCGGAGGGCATGGCTCCGTGGGGGGAAAA
CCCGGCCGAAGCAGGTGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13722:1204..1822-

>mRNA_H-canaliculatus_F_contig13722.2980.1 ID=mRNA_H-canaliculatus_F_contig13722.2980.1|Name=mRNA_H-canaliculatus_F_contig13722.2980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13722:1204..1822- (Hapterophycus canaliculatus Oshoro5f female)
CCTCGAGACGACGGAGCCTCCTTCCTGGCGCTGAAGCAGACGCTGCTGCT
GAGCTACTGCCGTGAGCTCTGCTCCTACGCCTCCGCCAAGGGTAGGGGGC
AGGCGCTGCGCGGGGGCGGGCCCGCGGGTAGGCTGGTGGAGCTACGGACA
GTGATGGAGAAGCTCCGGCCGATGGACAGCCTCGAGACGACGGAGCCTCC
TTCCTGGCGCTGAAGCAGACGCTGCTGCTGAGCTACTGCCGTGAGCTCTG
CTCCTACGCCTCCGCCAAGGGTAGGGGGCAGGCGCTGCGCGGGGGCGGGC
CCGCGGGTAGGCTGGTGGAGCTACGGACAGTGATGGAGAAGCTCCGGCCG
ATGGACAGGAAGCTTAAGTACCAAACGGACAAGATGCTGCGGCTGGCGAC
GTCCTCCAACGCCGACGGCACCTCCGCGGAAGGGGCCGGGGACGGAGACG
ATGATCCCCTGAGCTTCAGGCCTCGGCCGGAGGGCATGGCTCCGTGGGGG
GAAAACCCGGCCGAAGCAGGTGCGGAAGCTTAAGTACCAAACGGACAAGA
TGCTGCGGCTGGCGACGTCCTCCAACGCCGACGGCACCTCCGCGGAAGGG
GCCGGGGACGGAGACGATGATCCCCTGAGCTTCAGGCCTCGGCCGGAGGG
CATGGCTCCGTGGGGGGAAAACCCGGCCGAAGCAGGTGCG
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