mRNA_H-canaliculatus_F_contig13651.2938.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13651.2938.1
Unique NamemRNA_H-canaliculatus_F_contig13651.2938.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.410e-35
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   13 WDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            WDV  AEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMK+R D   P++YDP+RCNGCGAILNPYAQV
Sbjct:    4 WDVLGAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLAYDPIRCNGCGAILNPYAQV 73
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A7S2Y1K9_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1K9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.670e-33
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 MDGRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            M+G WD  AAEERD  RFSWNVWPSSRLEATRIVVPVGCLYTP+K   +   P++YDP+RCNGCGAILNPY Q+
Sbjct:    1 MEG-WDWGAAEERDGARFSWNVWPSSRLEATRIVVPVGCLYTPLKRLENMPPPLAYDPIRCNGCGAILNPYCQI 73
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A7S4D7Q8_HETAK (Protein transport protein SEC23 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7Q8_HETAK)

HSP 1 Score: 116 bits (290), Expect = 6.230e-31
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 MDGRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            M+G WDV AAEERD  RFSWNVWPSS+LEATRIVVP+GCLYTP+K        ++YDP+RCNGCG ILNP+ Q+
Sbjct:    1 MEG-WDVHAAEERDGARFSWNVWPSSKLEATRIVVPLGCLYTPLKKIEGMPPALAYDPIRCNGCGGILNPFCQI 73
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A482RVW2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVW2_9ARCH)

HSP 1 Score: 105 bits (262), Expect = 2.330e-28
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   10 RWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPY 213
            +WD +  E+RD VRFSWNVWP++RLEATRIV P+GC+Y+P+K        ++YDP+RCNGC AILNPY
Sbjct:    3 QWDFYGPEQRDGVRFSWNVWPTTRLEATRIVAPIGCMYSPLKKIEGMPDSLAYDPIRCNGCSAILNPY 70
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A835YT42_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT42_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.800e-28
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   13 WDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            WD+   EERD VRFSWNVWPSS+LEATRIVVP GCLY+P+K        ++YDP+RCNGCGAILNPYAQ+
Sbjct:   10 WDLQGNEERDGVRFSWNVWPSSKLEATRIVVPTGCLYSPLKRLEGMPPALAYDPIRCNGCGAILNPYAQI 79
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A7S3HKU0_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKU0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.140e-27
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 MDGRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            M  +WD    E+RD +R SWN WPSSR+EATRIVVP+GCLY+P+K   +    ++YDP+RCNGC A+LNPY QV
Sbjct:    1 MQQQWDFHGPEQRDGIRNSWNTWPSSRIEATRIVVPLGCLYSPLKRIENMPGSLAYDPIRCNGCTAVLNPYVQV 74
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A6U3YQE8_9STRA (Protein transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.360e-27
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 MDGRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAP---MSYDPVRCNGCGAILNPYAQV 222
            M   WDV A EERD  R SWNVWPSSRLEATRIVVPVGCLYTP+K R  ++ P   + YDP+RCN CGA+LNPY Q+
Sbjct:   12 MGEPWDVLAMEERDGARLSWNVWPSSRLEATRIVVPVGCLYTPLK-RLGSMPPTGALPYDPIRCNNCGAVLNPYCQI 87
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A7D9JDQ7_PARCT (Protein transport protein SEC23 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JDQ7_PARCT)

HSP 1 Score: 97.8 bits (242), Expect = 4.810e-25
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   31 EERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCN--GCGAILNPYAQV 222
            E+RD VRFSWNVWPSSRLEATR+VVPVGC+YTP+K R D + P+ YDPV C+   C AILNP+ QV
Sbjct:   12 EDRDGVRFSWNVWPSSRLEATRMVVPVGCMYTPLKERPD-LPPICYDPVVCSRSSCKAILNPFCQV 76
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: F0XWM5_AURAN (Protein transport protein SEC23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWM5_AURAN)

HSP 1 Score: 105 bits (263), Expect = 6.390e-25
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   19 VFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            + A EERD VR SWNVWPSSRLEATRIV+P+G LYTP+K   +   P+ YDP+RCNGCGA+LNPY QV
Sbjct:    6 IQAQEERDGVRLSWNVWPSSRLEATRIVIPIGALYTPLKPIGNP-PPLIYDPIRCNGCGALLNPYCQV 72
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BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Match: A0A7S2W7G0_9STRA (Protein transport protein SEC23 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7G0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.720e-25
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    7 GRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADTIAPMSYDPVRCNGCGAILNPYAQV 222
            G  DV+A EERD  R SWN+WPS+RLEATRIVVPVGC+YTP+K +   +  + YDP+RC+GCG+ LNPY QV
Sbjct:    5 GAQDVYAGEERDGARLSWNLWPSNRLEATRIVVPVGCMYTPLK-KWSNMPILPYDPIRCSGCGSTLNPYCQV 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13651.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK6_ECTSI2.410e-3585.71Protein transport protein SEC23 n=2 Tax=Ectocarpus... [more]
A0A7S2Y1K9_9STRA4.670e-3374.32Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A7S4D7Q8_HETAK6.230e-3168.92Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A482RVW2_9ARCH2.330e-2861.76Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YT42_9STRA6.800e-2870.00Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
A0A7S3HKU0_9STRA1.140e-2759.46Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A6U3YQE8_9STRA2.360e-2767.53Protein transport protein SEC23 n=1 Tax=Dictyocha ... [more]
A0A7D9JDQ7_PARCT4.810e-2569.70Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
F0XWM5_AURAN6.390e-2569.12Protein transport protein SEC23 n=1 Tax=Aureococcu... [more]
A0A7S2W7G0_9STRA8.720e-2563.89Protein transport protein SEC23 n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13651contigH-canaliculatus_F_contig13651:2529..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog2880.D8LCK6
Preferred nameSEC23A
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
EggNOG free text desc.COPII-coated vesicle budding
EggNOG OGsCOG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.6849632-CDS-H-canaliculatus_F_contig13651:2528..27501622929106.6849632-CDS-H-canaliculatus_F_contig13651:2528..2750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13651 2529..2750 +
1696845681.3822472-CDS-H-canaliculatus_F_contig13651:2528..27501696845681.3822472-CDS-H-canaliculatus_F_contig13651:2528..2750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13651 2529..2750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13651.2938.1prot_H-canaliculatus_F_contig13651.2938.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13651 2529..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13651.2938.1

>prot_H-canaliculatus_F_contig13651.2938.1 ID=prot_H-canaliculatus_F_contig13651.2938.1|Name=mRNA_H-canaliculatus_F_contig13651.2938.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
MDGRWDVFAAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKTRADT
IAPMSYDPVRCNGCGAILNPYAQV
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mRNA from alignment at H-canaliculatus_F_contig13651:2529..2750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13651.2938.1 ID=mRNA_H-canaliculatus_F_contig13651.2938.1|Name=mRNA_H-canaliculatus_F_contig13651.2938.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13651:2529..2750+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGGACGGTGGGACGTGTTCGCGGCGGAGGAGCGCGATGCTGTCCG
CTTCTCCTGGAACGTCTGGCCGAGCTCTCGCCTAGAGGCCACGCGGATAG
TCGTGCCCGTCGGGTGCCTGTACACGCCCATGAAGACCAGGGCGGACACA
ATCGCGCCTATGTCGTACGACCCCGTCCGCTGCAACGGCTGCGGGGCGAT
CCTAAACCCGTACGCCCAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13651:2529..2750+

>mRNA_H-canaliculatus_F_contig13651.2938.1 ID=mRNA_H-canaliculatus_F_contig13651.2938.1|Name=mRNA_H-canaliculatus_F_contig13651.2938.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13651:2529..2750+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGGACGGTGGGACGTGTTCGCGGCGGAGGAGCGCGATGCTGTCCG
CTTCTCCTGGAACGTCTGGCCGAGCTCTCGCCTAGAGGCCACGCGGATAG
TCGTGCCCGTCGGGTGCCTGTACACGCCCATGAAGACCAGGGCGGACACA
ATCGCGCCTATGTCGTACGACCCCGTCCGCTGCAACGGCTGCGGGGCGAT
CCTAAACCCGTACGCCCAGGTGATGGACGGACGGTGGGACGTGTTCGCGG
CGGAGGAGCGCGATGCTGTCCGCTTCTCCTGGAACGTCTGGCCGAGCTCT
CGCCTAGAGGCCACGCGGATAGTCGTGCCCGTCGGGTGCCTGTACACGCC
CATGAAGACCAGGGCGGACACAATCGCGCCTATGTCGTACGACCCCGTCC
GCTGCAACGGCTGCGGGGCGATCCTAAACCCGTACGCCCAGGTG
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