mRNA_H-canaliculatus_F_contig1364.2933.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1364.2933.1
Unique NamemRNA_H-canaliculatus_F_contig1364.2933.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 2.230e-125
Identity = 188/205 (91.71%), Postives = 196/205 (95.61%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEEKTKK 615
            MVKHNNV+PNGHFHKKWQRRVRTWFDQ PAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGF VEELKEAGISKK A TIGIAVDHRRTNKSEESFA NVARLKEYRA LI+FPRGSKHLPKKGDS+ EEQ AATQVTGVTMPLVKADKPVEFLPVT+EMT+T+LHSERR+ARNEFK+ GIRIRQKEEKTKK
Sbjct:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQ-PAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEKTKK 204
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A836C9T6_9STRA (60S ribosomal protein L13 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T6_9STRA)

HSP 1 Score: 251 bits (641), Expect = 6.300e-82
Identity = 134/202 (66.34%), Postives = 155/202 (76.73%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEEK 606
            MVKHNNV+PNGHFHKKWQ RV+TWFDQ P KKKARR  R  KAA +APRPTQLLRPAVHCPTIKYN KVRLGRGFT+ ELKEAGIS+KVA TIGI+VDHRRTN+S  +   NVARLKEY++KLI+FPR S   PK GD+ P + AAA QVTG  MPL KA   V F  VT EM +   +   R+AR++ ++ GIR +Q  EK
Sbjct:    1 MVKHNNVIPNGHFHKKWQTRVKTWFDQ-PMKKKARRMRRAAKAAAVAPRPTQLLRPAVHCPTIKYNMKVRLGRGFTLAELKEAGISRKVARTIGISVDHRRTNRSLATMQNNVARLKEYQSKLIIFPRRSNAKPKAGDAAPGDTAAAAQVTGAVMPLTKAVPAVAFAAVTDEMKAFKAYEALRVARSDARLVGIRKKQAAEK 201
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN)

HSP 1 Score: 230 bits (586), Expect = 1.340e-73
Identity = 122/194 (62.89%), Postives = 150/194 (77.32%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTG 579
            MVKHNNV+PNGHFHK WQRR++TWFDQ  AKKKARR  R+EKAA +APRP   LLRPAVHCPT+KY SKVR G+GF++EELKEAGISKK A +IGIAVD+RRTNKS ES   NV RLK Y+AKL++FPR S + PK GDSTPEE A A QVTG   P+ +     E   +T EM +T+++++ R+AR + ++ G
Sbjct:    1 MVKHNNVIPNGHFHKDWQRRIKTWFDQ-AAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQVTGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAG 193
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BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: K8Z7Z7_NANGC (Large subunit ribosomal protein L13e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Z7_NANGC)

HSP 1 Score: 228 bits (582), Expect = 5.430e-73
Identity = 121/195 (62.05%), Postives = 145/195 (74.36%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIR 585
            MV+HNNV+PN HFHK WQ RV+TWF Q PAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGFT++ELKEAG++KK A ++GIAVDHRRTN S ES   NV RLKEY++KLIVFP G    PK GDS+  E  AA Q TG  +PL    K VEF+ V+ E+ +   H+  R+ARN+ K+ GIR
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFVQ-PAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
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BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.180e-71
Identity = 122/196 (62.24%), Postives = 150/196 (76.53%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIR 585
            MVKHNNV+PN H HKKWQRRV+TWFDQ PAKKK RR AR+ KAAK+APRP   LLRP VHC T KY+SK RLGRGF++ ELKEAGI KKVA TIGIAVDHRRTNKS E+   N+ARL E++A+L+VFPR S   PK GDS PEE + ATQ+TG  +P+VK D+ +E   VT EM +    +  R+A+++ ++ G+R
Sbjct:    1 MVKHNNVVPNVHCHKKWQRRVKTWFDQ-PAKKKNRRLARKAKAAKLAPRPVSGLLRPVVHCSTQKYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQLTGPILPIVKTDE-LETAAVTDEMKNFKAFTSLRLAKSDARVLGLR 194
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A7R9WAC9_9STRA (60S ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA)

HSP 1 Score: 223 bits (568), Expect = 7.500e-71
Identity = 121/202 (59.90%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEE 603
            MVKHNNV+PN HFHK+WQ RV+TWFDQ PAKKKARR AR+ KAA +APRP   LLRPAV CPT +YN+KVR GRGFT+EELK AGISK+VA TIGIAVDHRR+NKS  +   NV RL  Y+AKL+VFPRGS   PK GD++ EE +AATQ+TG   P+       EF+ +T ++ + N +   RI R   +M G+RI++ +E
Sbjct:    1 MVKHNNVVPNQHFHKQWQNRVKTWFDQ-PAKKKARRAARKAKAAAIAPRPAAGLLRPAVRCPTQRYNTKVRAGRGFTLEELKTAGISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQLTGPLFPITAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKRAKE 201
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.970e-69
Identity = 117/203 (57.64%), Postives = 148/203 (72.91%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEEK 606
            MVKHNNV+PNGHFHK WQ R++TWFDQ  +KKK+RR  R+ KAA +APRP   LLRPAVHCPT+KY SKVR GRGFT++ELKEAGIS+K A TIGIAVD+RRTNKS ES   NV RLK Y++KL+VFPR     PK GDST EE   A Q TG  +P+ +  K +    +T +M  T++ +  R+AR + ++ G+R ++  EK
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQ-ASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQHTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAEK 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A7R9YEQ6_9STRA (60S ribosomal protein L13 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ6_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.290e-68
Identity = 124/197 (62.94%), Postives = 145/197 (73.60%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAAT-QVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRI 588
            MVKHNN++PN HFHKKWQRRV+  F Q  A+KKARR  R  KAA MAPRPTQLLRPAVHCPT +Y++KVRLGRGFT+EELK AGIS K+A TIGI+VD RR NKSEES   NV RL+ Y+ KL++FPR +   PKKGD+T EE AAAT Q  G  +PL   D  VE+  VT EM S    S  R+ARN+ K+ G RI
Sbjct:    1 MVKHNNIIPNQHFHKKWQRRVKVPFGQ-AAQKKARRMKRVAKAAAMAPRPTQLLRPAVHCPTQRYSAKVRLGRGFTLEELKAAGISPKMARTIGISVDKRRVNKSEESLNANVERLQAYKEKLVLFPRRTAQ-PKKGDATAEEVAAATEQYVGDILPLEAKDTEVEYAEVTDEMKSFGARSTLRVARNDHKLIGKRI 195
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: H3G8S1_PHYRM (60S ribosomal protein L13 n=5 Tax=Peronosporaceae TaxID=4777 RepID=H3G8S1_PHYRM)

HSP 1 Score: 213 bits (543), Expect = 4.520e-67
Identity = 117/206 (56.80%), Postives = 150/206 (72.82%), Query Frame = 1 
Query:    1 MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEEKTKK 615
            MVKHNNV+PNGHFHK W+ R++TWFDQ  AKKK RR AR+ KAA +APRP   LLRPAVHCPTIKY SKVR G+GFT+EELKEAGI++K A +IGIAVD RRTNKS ES   NV RLK Y+AKL+VFPR S + PK GDS+PEE   A Q TG  +P+ ++        +T EM   ++ ++ R+AR + ++ G + ++  +K +K
Sbjct:    1 MVKHNNVIPNGHFHKYWESRIKTWFDQ-AAKKKTRRLARKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGKGFTLEELKEAGINRKQAISIGIAVDFRRTNKSVESLQANVHRLKAYKAKLVVFPRKSVNKPKNGDSSPEETKNAVQYTGAILPITRSSVKSTTAVITPEMKEKSVFTQLRVARADKRIFGKQAKRLADKKEK 205
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.830e-66
Identity = 112/202 (55.45%), Postives = 147/202 (72.77%), Query Frame = 1 
Query:    4 VKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHRRTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQVTGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKEEK 606
            +KHNNV+PNGHFHK WQ R++TWFDQ  +KKK+RR  R+ KAA +APRP   LLRPAVHCPTIKY SKVR GRGFT++ELKEAGIS+K A TIG++VD+RRTNKS ES   NV RLK Y++KL++FPR     PK GDS  EE   ATQ+ G  +P+ +  K V    +T E+ + ++    R+AR + ++ G+R ++ +EK
Sbjct:    1 MKHNNVIPNGHFHKDWQNRIKTWFDQ-ASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQLIGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLRKKKADEK 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1364.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K6_ECTSI2.230e-12591.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9T6_9STRA6.300e-8266.3460S ribosomal protein L13 n=2 Tax=Tribonema minus ... [more]
A0A2D4BG90_PYTIN1.340e-7362.8960S ribosomal protein L13 n=1 Tax=Pythium insidios... [more]
K8Z7Z7_NANGC5.430e-7362.05Large subunit ribosomal protein L13e n=3 Tax=Monod... [more]
A0A7S2UYA0_9STRA1.180e-7162.2460S ribosomal protein L13 n=1 Tax=Fibrocapsa japon... [more]
A0A7R9WAC9_9STRA7.500e-7159.9060S ribosomal protein L13 n=1 Tax=Pseudictyota dub... [more]
A0A1V9ZEJ6_9STRA4.970e-6957.6460S ribosomal protein L13 n=1 Tax=Thraustotheca cl... [more]
A0A7R9YEQ6_9STRA1.290e-6862.9460S ribosomal protein L13 n=1 Tax=Pinguiococcus py... [more]
H3G8S1_PHYRM4.520e-6756.8060S ribosomal protein L13 n=5 Tax=Peronosporaceae ... [more]
A0A024TY88_9STRA1.830e-6655.4560S ribosomal protein L13 n=4 Tax=Aphanomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1364contigH-canaliculatus_F_contig1364:22124..26509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.2e-98
Seed eggNOG ortholog2880.D7G7K6
Preferred nameRPL13
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4352@1,KOG3295@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
Exons6
Model size618
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1364.2933.1prot_H-canaliculatus_F_contig1364.2933.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1364 22124..26509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.9979055-CDS-H-canaliculatus_F_contig1364:22123..222281622929105.9979055-CDS-H-canaliculatus_F_contig1364:22123..22228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 22124..22228 -
1696845681.1580777-CDS-H-canaliculatus_F_contig1364:22123..222281696845681.1580777-CDS-H-canaliculatus_F_contig1364:22123..22228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 22124..22228 -
1622929106.0118024-CDS-H-canaliculatus_F_contig1364:22578..226441622929106.0118024-CDS-H-canaliculatus_F_contig1364:22578..22644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 22579..22644 -
1696845681.168942-CDS-H-canaliculatus_F_contig1364:22578..226441696845681.168942-CDS-H-canaliculatus_F_contig1364:22578..22644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 22579..22644 -
1622929106.0274568-CDS-H-canaliculatus_F_contig1364:23146..232781622929106.0274568-CDS-H-canaliculatus_F_contig1364:23146..23278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 23147..23278 -
1696845681.178693-CDS-H-canaliculatus_F_contig1364:23146..232781696845681.178693-CDS-H-canaliculatus_F_contig1364:23146..23278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 23147..23278 -
1622929106.0388896-CDS-H-canaliculatus_F_contig1364:24093..242161622929106.0388896-CDS-H-canaliculatus_F_contig1364:24093..24216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 24094..24216 -
1696845681.1892502-CDS-H-canaliculatus_F_contig1364:24093..242161696845681.1892502-CDS-H-canaliculatus_F_contig1364:24093..24216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 24094..24216 -
1622929106.0493803-CDS-H-canaliculatus_F_contig1364:24955..250661622929106.0493803-CDS-H-canaliculatus_F_contig1364:24955..25066Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 24956..25066 -
1696845681.1993537-CDS-H-canaliculatus_F_contig1364:24955..250661696845681.1993537-CDS-H-canaliculatus_F_contig1364:24955..25066Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 24956..25066 -
1622929106.0598824-CDS-H-canaliculatus_F_contig1364:26428..265091622929106.0598824-CDS-H-canaliculatus_F_contig1364:26428..26509Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 26429..26509 -
1696845681.2080164-CDS-H-canaliculatus_F_contig1364:26428..265091696845681.2080164-CDS-H-canaliculatus_F_contig1364:26428..26509Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 26429..26509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1364.2933.1

>prot_H-canaliculatus_F_contig1364.2933.1 ID=prot_H-canaliculatus_F_contig1364.2933.1|Name=mRNA_H-canaliculatus_F_contig1364.2933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MVKHNNVLPNGHFHKKWQRRVRTWFDQQPAKKKARRQARQEKAAKMAPRP
TQLLRPAVHCPTIKYNSKVRLGRGFTVEELKEAGISKKVAPTIGIAVDHR
RTNKSEESFATNVARLKEYRAKLIVFPRGSKHLPKKGDSTPEEQAAATQV
TGVTMPLVKADKPVEFLPVTSEMTSTNLHSERRIARNEFKMTGIRIRQKE
EKTKK*
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mRNA from alignment at H-canaliculatus_F_contig1364:22124..26509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1364.2933.1 ID=mRNA_H-canaliculatus_F_contig1364.2933.1|Name=mRNA_H-canaliculatus_F_contig1364.2933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4386bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1364:22124..26509- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAAGCACAACAACGTCTTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTTCGGACATGGTTCGACCAGGTGAGCGATGCACTACAAA
CCTCACTCAAGCCGCCCGGAAATCCCCACGACAACCACCCCAGGTTACAG
CAAGCGTCCAACTCGCGGCATCGTTTCAACCTGAACGAAGCCAACGGCTC
ATCAAGTGGCCTAGGGCAAGCCCCTGGATGTAGTTGGAAATTATGAACCC
TTTTGCCCCATGCGGTGTAGCTGCCTCATGCCTTTTCGATGTTGCCGAGG
CGTGTCTGGAATGGCCTTCACAACACCAGATAGCAAGGCCTCACGCGTGT
GGCTCGAGACGATACGAGGTAGGGTGTGGTGACCATTGCCTGGCCGGTCG
CTCGCATGGAGCATCGCCGGTGCTCTTTGGGCGAAGTCATTCATGCAGCC
GCTGAAACGCTTGCTTGTCTGGTCTCACCACACCTCTCATCGTCCCCACT
GTCGACCACAAAGACTGAGGTGTGGAATAAAGCGCGTTTTCAGTTTATAG
CAAAGAGCGTCAAACATTCATAGTTAGGAAGTCACTGCAAACAAGTGTTA
ACGAGGGTATAGCGACCTATATCATCACCACCACCGCTGGGTCCGGCGAG
CTGCGGCTGGATGCATGTAGGCTATCATCGGGCCAGTATGCGCGGTGAAG
TCGTGGGCAGACCCAGCCGGAACGAGCGATCCATCAAGTTCTCGCTGATG
CCCATGGAACTCACTATTCCAGCGCGTGACTGCTCTTGCTTGGGAAGGTA
CTTGTATACTGCCCCGTCGGGCACACACGCGCCGTCGTTCACTCGCTCGC
CCTGCGTGTAAGTGGCGGTGAACGTCGCTCAAGGCGTGAACGTCCACGAG
CTGCAGCAGCTGCAGCTCTGCTGGTTGTTCTGCTTGAGTTGTCTTGAGGT
TGTCGATACGGACAACAACCGATGAGAACACCGAACCCCCCGGAACGTCG
AAACCGAGGTAGAAACACGTGGGACTCCAGGTACACAGTAATTCATACCT
GGTAGGTGTAAGCCCGTAAATATCAGGGATGAAGGTTGACTTCTCCATTT
TGCCTGTTCCGCCGTCCTCGCTTTCGTACGTCGCAGCATTTTTGTGCGAT
GAAGATGCCACAGAAGTGTTCGTAGTCGCTGATGTGACAACTCCAAACCA
AGAACAGAGCATAATTATTTTAATGTTTTTCTCCTCAAACAGCCCACAGC
GGGACGTGCGCTCATTACCCGGAGCGACCCGAGTGCTTCGCTCCTTCTCG
TCAACGTTGACGTTGGGAGTCTTTTCCAGCGGAGCTGGGCACTGCACAGC
AGCCTCGTACCAACGTCTAACCAAGCAGCTTCCGCAATCTGTGCTCGATG
GAAGAGCTGACGCCGACACGATCTCCCTCGCATTGACGCCGAGCAGCCCG
CCAAGAAGAAGGCGCGCCGCCAGGCGCGGCAGGAGAAGGCCGCTAAGATG
GCGCCTCGCCCCACCCAGCTCCTCAGGCCGGCAGTGCACTGCCCCACCAT
CAAGGTTTGTTTGGTTCGAGGATCGGCGAGAGGCTTAATCTCGTCCTTTT
TGTGTTGGTCGACGGTGGTTCCTGTATTCTGGGAGTTGTCTTGCTATCGC
TCTCAGCGATGGTAGTGTCAGGTCTTGTCGCTGGTGTCGCTTTCAATGTT
GGTGGTCGTGCCCTTGCTTGTGCCTGTGGTGCTTCTCTTACCTTCCATAG
TTTTGATTGTTTTGCTTGATGATGGGTCGTCCTTCGCGCACATGGTTGTG
ATCGGAGTTGAGGTTTTATGGATCGCGTGGACTGTCAGTACTTCGTCCGC
AGGACACGGCGTGTCGGCTGGGCATCTTTGGCTTCGGGTTGCGAGTTTGG
AAACTGTGGACGAGTTAGCACACATGCCATCGTCTATCGTACGACATGAT
ACCTCTTCGCCGCTTTGATTCACAGTACCCTGATGCAGAGTGTTGGACAG
GAAGCGTTTTTTGTGCTGCGTCGTCACTGGAGAAATGGTCCAAGGGTCAG
GCTCGGAGTTGGGCCTGCTATCGGCACCTTCTGTAGGACCTTGAAGTCAA
GTTCTTGTTTCCACTACGCCTGCTGCTGTCACAGATATCAGCTGGTTTGT
TCAGATCGAAAACAGATCAAAGTACACTCCGCCTCGTGCCCCAAACACTT
CGTGAAGGGCAACAGCGTGGATAAGGTCCGGGTGGCCTACTCTAAGGGCC
GTACTTCTTCTGCTTCCTTGCTATATTTTCTCGTGTCGTGCAGTACAACT
CCAAGGTCCGCCTTGGACGCGGCTTCACCGTGGAGGAGCTCAAGGAGGCT
GGCATCTCCAAGAAGGTGGCTCCCACTATCGGAATCGCCGTCGACCACCG
CCGCACCAACAAGTCGGTAAGTAACGTTTTCGTTTTTGTGCCATCTCAAC
TGAGGAAGGGCCTAACGCTTGCAAGCCCCCAAACGTGCGAACCGCCCAAT
ATAGCTATACAACGCAGATAACTGCTTTGTCTCCCCTTCGTGCAGCGGCC
CTACATTGCATAATTTATCTCGTATTGGGATGGTACTTGTGGGGATAGAG
AGGATATCAAGTACCTCGCTTGACTTGAGCCAAGGCCCCCTGAAAAACTG
TCCAGGGTTTTAGATCGACGTGTTTCAAATTTGGATGTGCAGTGGCCGCG
GGCAAAACCCGCGGTTCTGTTACAAGTAGCTGTCATTGCCACTGCATATG
TCTTTAGTGTCTAGTCGGTGCACCAAAGCGGTGAACCAGGCCAAAACGAC
CCGCAGACCTTAGTGGGCAGGAGGCAAAACAGAGACACCAGTATCGTGGG
AAGGAACTCCTTTTTTTGTTGCATTTTCGCTATCCTTGAAATAGAGCACG
ATTCGTGGTTCTCGGAGTGTGTAGCATGGCCAGTTTTTTTCCGGCTCCAT
GTGGTGGCTCTGTCTCTTTAAGGTGCTCCACGTGGAGCGCCGCTGAGCTG
CACATTGGGAGGTCGGGTTGTTGTCCATTCTGCGGTGTCCTGTCGTGCCG
TCTGTCTTATTCCGCGCTCGGGTTCGTGACCACGCACGGAGTCTGTCCGA
CAACGAAGTAAACGACGGCAAATCGAGAAACTGGAGCAAGAACGGAAATC
GAAACATGACCGAACTCTAGCCGAGTAGCTAGCCCCCTCGAACCTTGCGC
TTAAACGTGTTCCCGTGCTCTTCATTTGCAGGAGGAGTCCTTCGCGACCA
ACGTGGCTCGCCTGAAAGAGTACCGCGCCAAGCTCATCGTCTTCCCCCGC
GGCAGCAAGCACCTGCCCAAGAAGGGCGACTCGACGCCCGAGGAGCAGGC
AGCGGCAACGCAGGTGAGAGAAAGTGGGGGTTGGGGCTGCATGCAGCGAC
GGGGGGAGGGAGACGGTTGGAGAGACTCATGCAAAGGGGGGTGTCGAGAA
ATGGAGGAGAAAGGGAAGGGGGGGCGTAGTCTACAAGTTTACTCGAGCGG
GTGAATTCTGCGCTGAATGCGGGGGCGGTGTGCGTGCACGATTCTCTTGG
AAAGCTGAGAGTGTCGGGCTTCGCGCTCGAAGGGCCTCAGGCCGTATGGC
GTGTGCTCGATGGAGAAACCTGCTGCACTGGTGAACTACGTGCCTCGTAG
CTCTCCCACCCACCCCCGAAAAGTATAGAGGATGGTGTTGATTCTGCTGT
TACTGTCGTACAGTAGGTGGAAGTAGCGCTGGCGTTCCGTACCTGGCCAC
CTGACCTGCCTTATATGAAAGCCGACTGTCCTAATCTGTATACTCGACAA
GCCCACAACGACATCATCCTGATCCGTTTACGGCACTGTCGTTTATCGTG
CTCCACCTTTTTTAGGTGACCGGCGTCACCATGCCTCTCGTCAAGGCCGA
CAAGCCTGTCGAGTTCCTCCCTGTCACCTCGGTGAGTCCGAACTGCGAAG
GGACGTTTCTAGCTACATCTCCTGGTGCCAACGTTGTACCTGGCATCGGT
ATTCAGCAGTTAAACGCAGCTGGTTAGAGAGGAGTTGCCCCACTTTCAGG
GTATTTTCATCACGGGGAAACGACTTTGCTATGACATTTCGGGGAAGGGG
TTGATGGGTTTTCTTGACTCGTTAATGGCACGGGTTCGGAAGCCTCGAGA
GTTTCCAGGTAATTCCTCACCCGTTACGCTCCCCTCCCCCGAATTATGGG
CATCAAAGCTTTTTGCACTCGAAGACGTCAGGATGAAACTAAAGCCACGT
ACACGCTCCGTATCCTTTGTTGACGTTGCAGGAGATGACCTCCACCAACC
TCCACAGCGAGAGGCGCATTGCCCGCAACGAGTTCAAGATGACCGGTATC
CGCATCCGCCAAAAGGAGGAGAAGACCAAGAAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1364:22124..26509-

>mRNA_H-canaliculatus_F_contig1364.2933.1 ID=mRNA_H-canaliculatus_F_contig1364.2933.1|Name=mRNA_H-canaliculatus_F_contig1364.2933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1364:22124..26509- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAAGCACAACAACGTCTTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTTCGGACATGGTTCGACCAGATGGTGAAGCACAACAACG
TCTTGCCGAACGGCCACTTCCACAAGAAGTGGCAGAGGAGGGTTCGGACA
TGGTTCGACCAGCAGCCCGCCAAGAAGAAGGCGCGCCGCCAGGCGCGGCA
GGAGAAGGCCGCTAAGATGGCGCCTCGCCCCACCCAGCTCCTCAGGCCGG
CAGTGCACTGCCCCACCATCAAGCAGCCCGCCAAGAAGAAGGCGCGCCGC
CAGGCGCGGCAGGAGAAGGCCGCTAAGATGGCGCCTCGCCCCACCCAGCT
CCTCAGGCCGGCAGTGCACTGCCCCACCATCAAGTACAACTCCAAGGTCC
GCCTTGGACGCGGCTTCACCGTGGAGGAGCTCAAGGAGGCTGGCATCTCC
AAGAAGGTGGCTCCCACTATCGGAATCGCCGTCGACCACCGCCGCACCAA
CAAGTCGTACAACTCCAAGGTCCGCCTTGGACGCGGCTTCACCGTGGAGG
AGCTCAAGGAGGCTGGCATCTCCAAGAAGGTGGCTCCCACTATCGGAATC
GCCGTCGACCACCGCCGCACCAACAAGTCGGAGGAGTCCTTCGCGACCAA
CGTGGCTCGCCTGAAAGAGTACCGCGCCAAGCTCATCGTCTTCCCCCGCG
GCAGCAAGCACCTGCCCAAGAAGGGCGACTCGACGCCCGAGGAGCAGGCA
GCGGCAACGCAGGAGGAGTCCTTCGCGACCAACGTGGCTCGCCTGAAAGA
GTACCGCGCCAAGCTCATCGTCTTCCCCCGCGGCAGCAAGCACCTGCCCA
AGAAGGGCGACTCGACGCCCGAGGAGCAGGCAGCGGCAACGCAGGTGACC
GGCGTCACCATGCCTCTCGTCAAGGCCGACAAGCCTGTCGAGTTCCTCCC
TGTCACCTCGGTGACCGGCGTCACCATGCCTCTCGTCAAGGCCGACAAGC
CTGTCGAGTTCCTCCCTGTCACCTCGGAGATGACCTCCACCAACCTCCAC
AGCGAGAGGCGCATTGCCCGCAACGAGTTCAAGATGACCGGTATCCGCAT
CCGCCAAAAGGAGGAGAAGACCAAGAAGTAGGAGATGACCTCCACCAACC
TCCACAGCGAGAGGCGCATTGCCCGCAACGAGTTCAAGATGACCGGTATC
CGCATCCGCCAAAAGGAGGAGAAGACCAAGAAGTAG
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