mRNA_H-canaliculatus_F_contig13601.2906.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13601.2906.1
Unique NamemRNA_H-canaliculatus_F_contig13601.2906.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13601.2906.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.590e-5
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    5 GIDLRVIYLRRSAKDMLFSNVVHRQFEDRGLDLTTSTHQERA-ASYMRTFFTGAGVM 172
            GID RV+YLRRSAK+++ +N VHR+F     D   +  QER    YMR  FT   V+
Sbjct:  266 GIDFRVLYLRRSAKEVVIANTVHRKFHLLMGDDEETVGQERLFLKYMRVLFTDIAVL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13601.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH94_9PHAE6.590e-547.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13601contigH-canaliculatus_F_contig13601:613..1713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.9112601-CDS-H-canaliculatus_F_contig13601:613..7001622929102.9112601-CDS-H-canaliculatus_F_contig13601:613..700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13601 614..700 -
1696845679.802562-CDS-H-canaliculatus_F_contig13601:613..7001696845679.802562-CDS-H-canaliculatus_F_contig13601:613..700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13601 614..700 -
1622929102.929292-CDS-H-canaliculatus_F_contig13601:1626..17131622929102.929292-CDS-H-canaliculatus_F_contig13601:1626..1713Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13601 1627..1713 -
1696845679.8129559-CDS-H-canaliculatus_F_contig13601:1626..17131696845679.8129559-CDS-H-canaliculatus_F_contig13601:1626..1713Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13601 1627..1713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13601.2906.1prot_H-canaliculatus_F_contig13601.2906.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13601 614..1713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13601.2906.1

>prot_H-canaliculatus_F_contig13601.2906.1 ID=prot_H-canaliculatus_F_contig13601.2906.1|Name=mRNA_H-canaliculatus_F_contig13601.2906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
GGHRPACHLLATLGEGHAVLQRGASPVRRPRPGLDNVDAPRTRSLIHAYF
FHRCGSHA
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mRNA from alignment at H-canaliculatus_F_contig13601:613..1713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13601.2906.1 ID=mRNA_H-canaliculatus_F_contig13601.2906.1|Name=mRNA_H-canaliculatus_F_contig13601.2906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13601:613..1713- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGCATCGACCTGCGTGTCATCTACTTGCGACGCTCGGCGAAGGACA
TGCTGTTCTCCAACGTGGTGCATCGCCAGTTCGAAGAGTGAGCATCGACA
TCGAGAACAATCTACACAGTGCAAGTGGTGGTGGTAGTGACAGAAGATAT
TGGTTGTTGACCTGTCTCTGTTCATCGCTGGTCGCAAGCGCACGGTGAAG
AGGTCCATTAGAGTAACGTTGATTGTTTGGCGTCCTACTTGATAAAATAA
ATGATGATGGGTTTTGATCTACGCCCCCACTTTTTGAAAGAGCCGAGGCC
GATGAGGAAAACAATCGTTTATATGCCGCCTGACGATCGCTGCACAAGCA
GCTGCTGTAGAGAAGTTTGTCGTGTAACGTTGAGAGGCCGGACGATGCAG
TGAACTTTTGCATCAACTCAAAAGAGCAACCGCACCCCCCCCCCCCCCCC
ACCTCTCCCGGCCCACGTCCCACAGACCGAAACGACCAACCNNNNNNNNN
NTGATTTTTATATCACAAACCAAAACACACGCTCCCCTCCCCCCCCCCGA
CAGTTGTTGCTTCCGGAACAGACAGGACGATATGAAATACTAAGAGCATG
TTTCGAACGCCTTCTTTCGCTCACTAGATTATTTTGTCATTTACGGTGGG
AGCCATATAGCTCGACGTCGCACGGGCTTCCCGAAGGGCCCACGTACCAG
AGCGACTCGCGATGCCCGAGTGCCGCCTGTTGGTCGTGCACGTCGCCGCC
TAGCTTCGACGCTTGTGGTCCGATATCCTGAGCCTTACGGCAAGGAGCGT
CCTGTGTCCAACATCACCGTCTCCTGACCGTACCTTTGGTTCGAGGTTTC
GTCCTCAGCCTGGCCAATGTTGCCGATCGATGCCCTCTTGTGCGACGATA
ACATAAACATCCGAGTTTTGATCCCATGGCCCTTTGAAGTTGTCCCGCTA
TCTTGGCACTCACCTGCCTTTCTCGCCGACGCTGTTGTTGTCGTCTGCAT
CACTGCTGAACAGCCGCGGCCTGGACTTGACAACGTCGACGCACCAAGAA
CGCGCAGCCTCATACATGCGTACTTTTTTCACCGGTGCGGGAGTCATGCA
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13601:613..1713-

>mRNA_H-canaliculatus_F_contig13601.2906.1 ID=mRNA_H-canaliculatus_F_contig13601.2906.1|Name=mRNA_H-canaliculatus_F_contig13601.2906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13601:613..1713- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGCATCGACCTGCGTGTCATCTACTTGCGACGCTCGGCGAAGGACA
TGCTGTTCTCCAACGTGGTGCATCGCCAGTTCGAAGAGGAGGGCATCGAC
CTGCGTGTCATCTACTTGCGACGCTCGGCGAAGGACATGCTGTTCTCCAA
CGTGGTGCATCGCCAGTTCGAAGACCGCGGCCTGGACTTGACAACGTCGA
CGCACCAAGAACGCGCAGCCTCATACATGCGTACTTTTTTCACCGGTGCG
GGAGTCATGCACCGCGGCCTGGACTTGACAACGTCGACGCACCAAGAACG
CGCAGCCTCATACATGCGTACTTTTTTCACCGGTGCGGGAGTCATGCA
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