mRNA_H-canaliculatus_F_contig1360.2903.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1360.2903.1
Unique NamemRNA_H-canaliculatus_F_contig1360.2903.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: D7G2M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 7.620e-34
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MSSSLADASVLGSTQNGDAMESGENSLSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            MSSSLADAS+LGSTQNGDAM SG+N+LSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+
Sbjct:    1 MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVA 66
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.540e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 MSSSLADASVLGSTQNGDAMESGENSLSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            MSSSLADAS LGSTQNGDA+ SG+N+LSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+
Sbjct:    1 MSSSLADASFLGSTQNGDAIGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVA 66
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.920e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   85 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            F +SDFYLNMDDV +G QIGQGAFSKVY+G+YLGELV+
Sbjct:   32 FEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVA 69
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-8
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   82 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            SF DSD+ L++ DV+IGP +G+G FSKVY+GRY GE+V+
Sbjct:   10 SFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVA 48
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   85 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            F+++D YL++ D+ +G QIGQGAFSKVY+GRY GELV+
Sbjct:    6 FDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVA 43
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BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.260e-6
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   85 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 198
            F +SDFY+  + V IGP +G+GAFS VY+G+Y G++V+
Sbjct:   12 FEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVA 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1360.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2M6_ECTSI7.620e-3490.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN5_9PHAE7.540e-2989.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA2.920e-1178.95LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A7S2SRX7_9STRA3.030e-861.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CNH5_9STRA3.650e-863.16Kinase-like domain-containing protein (Fragment) n... [more]
D7G911_ECTSI2.260e-652.63LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1360contigH-canaliculatus_F_contig1360:5396..5593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-11_002790.1
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.6029792-CDS-H-canaliculatus_F_contig1360:5395..55931622929102.6029792-CDS-H-canaliculatus_F_contig1360:5395..5593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 5396..5593 -
1696845679.6334033-CDS-H-canaliculatus_F_contig1360:5395..55931696845679.6334033-CDS-H-canaliculatus_F_contig1360:5395..5593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 5396..5593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1360.2903.1prot_H-canaliculatus_F_contig1360.2903.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1360 5396..5593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1360.2903.1

>prot_H-canaliculatus_F_contig1360.2903.1 ID=prot_H-canaliculatus_F_contig1360.2903.1|Name=mRNA_H-canaliculatus_F_contig1360.2903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
MSSSLADASVLGSTQNGDAMESGENSLSFNDSDFYLNMDDVDIGPQIGQG
AFSKVYLGRYLGELVS
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mRNA from alignment at H-canaliculatus_F_contig1360:5396..5593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1360.2903.1 ID=mRNA_H-canaliculatus_F_contig1360.2903.1|Name=mRNA_H-canaliculatus_F_contig1360.2903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:5396..5593- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAGCTCTCTCGCCGACGCGTCCGTACTGGGTAGCACGCAGAATGG
GGACGCGATGGAGTCGGGAGAGAACTCTCTAAGCTTTAACGACAGCGACT
TCTACCTGAACATGGACGACGTCGACATCGGTCCCCAGATAGGGCAGGGA
GCGTTCTCCAAGGTGTACCTCGGACGATATCTGGGAGAGCTGGTGAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1360:5396..5593-

>mRNA_H-canaliculatus_F_contig1360.2903.1 ID=mRNA_H-canaliculatus_F_contig1360.2903.1|Name=mRNA_H-canaliculatus_F_contig1360.2903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:5396..5593- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAGCTCTCTCGCCGACGCGTCCGTACTGGGTAGCACGCAGAATGG
GGACGCGATGGAGTCGGGAGAGAACTCTCTAAGCTTTAACGACAGCGACT
TCTACCTGAACATGGACGACGTCGACATCGGTCCCCAGATAGGGCAGGGA
GCGTTCTCCAAGGTGTACCTCGGACGATATCTGGGAGAGCTGGTGAGTAT
GAGCAGCTCTCTCGCCGACGCGTCCGTACTGGGTAGCACGCAGAATGGGG
ACGCGATGGAGTCGGGAGAGAACTCTCTAAGCTTTAACGACAGCGACTTC
TACCTGAACATGGACGACGTCGACATCGGTCCCCAGATAGGGCAGGGAGC
GTTCTCCAAGGTGTACCTCGGACGATATCTGGGAGAGCTGGTGAGT
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