mRNA_H-canaliculatus_F_contig13509.2847.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13509.2847.1
Unique NamemRNA_H-canaliculatus_F_contig13509.2847.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13509.2847.1 vs. uniprot
Match: A0A6H5KHK7_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.630e-5
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   19 AATAGANTLELCFLVDGGGVPSVQSARLEYEEEVTELVEIPAPV 150
            AA   A  +   F VD GGVPSV SARLEY+EEVTELVE+PAPV
Sbjct:  676 AAAVAATKVNFFFRVDDGGVPSVHSARLEYDEEVTELVEVPAPV 719
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13509.2847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHK7_9PHAE2.630e-568.18HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13509contigH-canaliculatus_F_contig13509:370..2454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionweakly similar to heat shock protein 70
Ec32 orthologEc-11_005010.1
Exons2
Model size1528
Cds size1185
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13509.2847.1prot_H-canaliculatus_F_contig13509.2847.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13509 711..2454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.5270467-UTR-H-canaliculatus_F_contig13509:369..7101622929092.5270467-UTR-H-canaliculatus_F_contig13509:369..710Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13509 370..710 -
1696845676.7157323-UTR-H-canaliculatus_F_contig13509:369..7101696845676.7157323-UTR-H-canaliculatus_F_contig13509:369..710Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13509 370..710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.5412633-CDS-H-canaliculatus_F_contig13509:710..17971622929092.5412633-CDS-H-canaliculatus_F_contig13509:710..1797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13509 711..1797 -
1696845676.7245524-CDS-H-canaliculatus_F_contig13509:710..17971696845676.7245524-CDS-H-canaliculatus_F_contig13509:710..1797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13509 711..1797 -
1622929092.5541575-CDS-H-canaliculatus_F_contig13509:2356..24541622929092.5541575-CDS-H-canaliculatus_F_contig13509:2356..2454Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13509 2357..2454 -
1696845676.7384214-CDS-H-canaliculatus_F_contig13509:2356..24541696845676.7384214-CDS-H-canaliculatus_F_contig13509:2356..2454Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13509 2357..2454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13509.2847.1

>prot_H-canaliculatus_F_contig13509.2847.1 ID=prot_H-canaliculatus_F_contig13509.2847.1|Name=mRNA_H-canaliculatus_F_contig13509.2847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=395bp
EASAASAATAGANTLELCFLVDGGGVPSVQSARLEYEEEVTELVEIPAPV
EPAAAAAAAAEVEVAAAVEPSPSPAGSSDGDGDSGANGSGGDCDVTAAAA
TAAANTTLRKNRDEAATAGEVGIEQAQGAGKQAQDQDQDQDLEPEHGKQE
QEGLTGKSESEKKEGIEDTKREPVATAAAAAAATAGTPEGKFGGGQPEER
SRDKEAAVDKDEGGDGDGVRGAHPKMARVPRVVTRRRSRPVRLKQTYSGM
LEGAELEVGMKVLLRAPFHLCPVALPHPLAHTRPSCVFGHDTSLRCYLSP
LAVVTRNIRRATGSCYRWSCSGQHPARRRLFHASFFLRNLPRASVSFPHI
AELHSQWHRPLLGALRPLPLFFGARSSFSSIKHPDESTKFPSAV*
back to top

mRNA from alignment at H-canaliculatus_F_contig13509:370..2454-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13509.2847.1 ID=mRNA_H-canaliculatus_F_contig13509.2847.1|Name=mRNA_H-canaliculatus_F_contig13509.2847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2085bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13509:370..2454- (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGTCGGCAGCGTCAGCTGCAACGGCGGGAGCAAACACGCTCGAGCT
TTGCTTCCTAGTGGACGGTGGAGGCGTGCCGAGCGTGCAGTCGGCGAGGT
AAGTTCCCTTCGGGCGAAGGGCCTCCTGCGCAGAGCTCTAGATCTATCAG
TGTGGCAGTCGATCCGCTCGGGCCACAAACGCTGTGATTTCGCCCCGCGG
CAGAATCGACGGGTGGATCGAGTGCGGCCAAGATTTTTAACCTCCCGCGG
ATGTCCCCCCTCCGTTGCTTGCCTCGAGGAGTTCGCTTGCTGCGCCACCC
GAGGTGCCGCCGTGGCGTGAGCGCTTCGGGGACGTCGTGCGAGCGGCGAC
CGTCCACGCTGTTCTCGCCTCGACATCGTCCGCGAAGCGGACGAGTTTTC
CCGTGGCTAAGTGTGCGCGCGTACGAGCTTGCGTGCATGCGTAGCAGGTA
GAGCCGAGGGTTGCTCCTTGGTCGTCGCGCAGCTCGCGTTTCTGCCGGGG
TGATTCCCTCTGGTAGTGCTCCCTCCCCACGCCGTGCAAATGCTGAGTGC
GCCTGTGTCTGCACGGGGTGCATCCATCCACGCGCCGGTCGGACCTTTCC
TTTCTCCTATTGTTCTTTCGGCGCGCGCGTGCTTGTGCGCGATTCGCGTT
TGTCTAGGCTGGAATACGAGGAAGAAGTCACGGAGTTGGTCGAGATACCG
GCGCCGGTTGAGCCTGCCGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGGT
GGCGGCCGCGGTGGAACCCTCGCCTTCTCCAGCAGGTAGCAGCGACGGCG
ACGGCGACAGCGGTGCGAACGGGAGCGGTGGTGACTGTGACGTCACCGCT
GCTGCTGCTACTGCCGCCGCGAATACGACCTTGCGAAAAAACCGCGATGA
AGCGGCGACCGCGGGCGAGGTGGGGATCGAACAAGCGCAAGGGGCGGGAA
AACAGGCGCAGGATCAGGATCAGGATCAGGATCTGGAGCCAGAGCATGGG
AAGCAGGAGCAAGAAGGCTTGACGGGAAAAAGCGAGTCTGAAAAAAAGGA
GGGCATAGAGGATACCAAACGGGAGCCGGTGGCAACGGCGGCGGCGGCGG
CGGCGGCGACTGCTGGAACGCCCGAGGGGAAATTTGGAGGGGGGCAGCCG
GAAGAACGATCGAGGGATAAGGAGGCAGCGGTCGATAAGGATGAAGGTGG
AGACGGGGATGGCGTCCGAGGAGCCCACCCGAAGATGGCCAGGGTGCCGC
GTGTGGTGACTCGCCGGCGGAGTCGGCCCGTGCGCCTGAAGCAGACGTAC
AGCGGCATGCTGGAAGGGGCGGAGCTGGAGGTGGGGATGAAAGTGCTGTT
GCGGGCACCGTTTCATCTATGTCCTGTTGCCCTTCCGCACCCGTTAGCAC
ACACCCGCCCCTCGTGTGTTTTTGGCCACGACACCTCGCTCAGGTGCTAT
CTGTCCCCGCTTGCTGTCGTGACAAGAAACATCAGGCGGGCAACGGGCAG
CTGCTACCGATGGTCATGCTCAGGCCAACATCCGGCGCGAAGACGTCTTT
TTCATGCCTCCTTTTTTCTTCGAAATCTGCCCCGTGCGTCCGTTTCCTTT
CCCCACATCGCTGAACTTCATTCCCAATGGCACCGGCCCCTTCTTGGCGC
ACTGCGTCCTCTTCCGCTCTTTTTTGGCGCACGATCATCGTTTTCCAGCA
TCAAACACCCCGATGAGTCTACCAAATTCCCCTCGGCCGTATAACTGGAT
GCCTGCAACGCCGCTCTTTCAGGGCTCAGCGGCCTCGTCACGGAAAAAAG
GCCGACAAATAAAATCGATTCACTTCTGGGCGCCGCACGCTATCACGACG
TCAACGAGGCGTTCACTTGCGCACGGGCGCGAGACGAGATACCATTGCGT
CACCTTTACCCCCCTCTCGCTCACGACTTCTGTCTCCCGCCCGAACCTTT
CCATTTCGCGTCTCTTTCTCCCTGTCACCTCTCCTGCGCGAAGAAACCAA
CGCAGTAGCTCTCGTTCTGAGATACAGCATGCCACGATGCCCCCTCACTC
GCTCTCCGCCCCCGTCTCCCCTCCGAGCCCTTCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13509:370..2454-

>mRNA_H-canaliculatus_F_contig13509.2847.1 ID=mRNA_H-canaliculatus_F_contig13509.2847.1|Name=mRNA_H-canaliculatus_F_contig13509.2847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2370bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13509:370..2454- (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGTCGGCAGCGTCAGCTGCAACGGCGGGAGCAAACACGCTCGAGCT
TTGCTTCCTAGTGGACGGTGGAGGCGTGCCGAGCGTGCAGTCGGCGAGGA
GGCGTCGGCAGCGTCAGCTGCAACGGCGGGAGCAAACACGCTCGAGCTTT
GCTTCCTAGTGGACGGTGGAGGCGTGCCGAGCGTGCAGTCGGCGAGGCTG
GAATACGAGGAAGAAGTCACGGAGTTGGTCGAGATACCGGCGCCGGTTGA
GCCTGCCGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGGTGGCGGCCGCGG
TGGAACCCTCGCCTTCTCCAGCAGGTAGCAGCGACGGCGACGGCGACAGC
GGTGCGAACGGGAGCGGTGGTGACTGTGACGTCACCGCTGCTGCTGCTAC
TGCCGCCGCGAATACGACCTTGCGAAAAAACCGCGATGAAGCGGCGACCG
CGGGCGAGGTGGGGATCGAACAAGCGCAAGGGGCGGGAAAACAGGCGCAG
GATCAGGATCAGGATCAGGATCTGGAGCCAGAGCATGGGAAGCAGGAGCA
AGAAGGCTTGACGGGAAAAAGCGAGTCTGAAAAAAAGGAGGGCATAGAGG
ATACCAAACGGGAGCCGGTGGCAACGGCGGCGGCGGCGGCGGCGGCGACT
GCTGGAACGCCCGAGGGGAAATTTGGAGGGGGGCAGCCGGAAGAACGATC
GAGGGATAAGGAGGCAGCGGTCGATAAGGATGAAGGTGGAGACGGGGATG
GCGTCCGAGGAGCCCACCCGAAGATGGCCAGGGTGCCGCGTGTGGTGACT
CGCCGGCGGAGTCGGCCCGTGCGCCTGAAGCAGACGTACAGCGGCATGCT
GGAAGGGGCGGAGCTGGAGGTGGGGATGAAAGTGCTGTTGCGGGCACCGT
TTCATCTATGTCCTGTTGCCCTTCCGCACCCGTTAGCACACACCCGCCCC
TCGTGTGTTTTTGGCCACGACACCTCGCTCAGGTGCTATCTGTCCCCGCT
TGCTGTCGTGACAAGAAACATCAGGCGGGCAACGGGCAGCTGCTACCGAT
GGTCATGCTCAGGCCAACATCCGGCGCGAAGACGTCTTTTTCATGCCTCC
TTTTTTCTTCGAAATCTGCCCCGTGCGTCCGTTTCCTTTCCCCACATCGC
TGAACTTCATTCCCAATGGCACCGGCCCCTTCTTGGCGCACTGCGTCCTC
TTCCGCTCTTTTTTGGCGCACGATCATCGTTTTCCAGCATCAAACACCCC
GATGAGTCTACCAAATTCCCCTCGGCCGTATAAGCTGGAATACGAGGAAG
AAGTCACGGAGTTGGTCGAGATACCGGCGCCGGTTGAGCCTGCCGCGGCG
GCGGCGGCGGCGGCGGAGGTGGAGGTGGCGGCCGCGGTGGAACCCTCGCC
TTCTCCAGCAGGTAGCAGCGACGGCGACGGCGACAGCGGTGCGAACGGGA
GCGGTGGTGACTGTGACGTCACCGCTGCTGCTGCTACTGCCGCCGCGAAT
ACGACCTTGCGAAAAAACCGCGATGAAGCGGCGACCGCGGGCGAGGTGGG
GATCGAACAAGCGCAAGGGGCGGGAAAACAGGCGCAGGATCAGGATCAGG
ATCAGGATCTGGAGCCAGAGCATGGGAAGCAGGAGCAAGAAGGCTTGACG
GGAAAAAGCGAGTCTGAAAAAAAGGAGGGCATAGAGGATACCAAACGGGA
GCCGGTGGCAACGGCGGCGGCGGCGGCGGCGGCGACTGCTGGAACGCCCG
AGGGGAAATTTGGAGGGGGGCAGCCGGAAGAACGATCGAGGGATAAGGAG
GCAGCGGTCGATAAGGATGAAGGTGGAGACGGGGATGGCGTCCGAGGAGC
CCACCCGAAGATGGCCAGGGTGCCGCGTGTGGTGACTCGCCGGCGGAGTC
GGCCCGTGCGCCTGAAGCAGACGTACAGCGGCATGCTGGAAGGGGCGGAG
CTGGAGGTGGGGATGAAAGTGCTGTTGCGGGCACCGTTTCATCTATGTCC
TGTTGCCCTTCCGCACCCGTTAGCACACACCCGCCCCTCGTGTGTTTTTG
GCCACGACACCTCGCTCAGGTGCTATCTGTCCCCGCTTGCTGTCGTGACA
AGAAACATCAGGCGGGCAACGGGCAGCTGCTACCGATGGTCATGCTCAGG
CCAACATCCGGCGCGAAGACGTCTTTTTCATGCCTCCTTTTTTCTTCGAA
ATCTGCCCCGTGCGTCCGTTTCCTTTCCCCACATCGCTGAACTTCATTCC
CAATGGCACCGGCCCCTTCTTGGCGCACTGCGTCCTCTTCCGCTCTTTTT
TGGCGCACGATCATCGTTTTCCAGCATCAAACACCCCGATGAGTCTACCA
AATTCCCCTCGGCCGTATAA
back to top