mRNA_H-canaliculatus_F_contig13496.2830.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13496.2830.1
Unique NamemRNA_H-canaliculatus_F_contig13496.2830.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13496.2830.1 vs. uniprot
Match: D8LL83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL83_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.790e-13
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 ATGETATLWCLKDFVCGKETQAAMETLCRSHRHKAGRLASHRGVRAGEAIFRRRY 165
            ATGETATLWCLKDFVCGK+TQ AMETL R+ R KAGR A+HRG+  G  + RRRY
Sbjct:  471 ATGETATLWCLKDFVCGKDTQTAMETLNRTERQKAGRSANHRGL-GGTDVHRRRY 524
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BLAST of mRNA_H-canaliculatus_F_contig13496.2830.1 vs. uniprot
Match: A0A6H5JLF6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.770e-5
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    7 GETATLWCLKDFVCGKETQAAMETLCRS 90
            GETATLWCLKDFVCGK+TQ AMETL R+
Sbjct:  726 GETATLWCLKDFVCGKDTQTAMETLNRT 753
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13496.2830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL83_ECTSI1.790e-1372.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLF6_9PHAE9.770e-585.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13496contigH-canaliculatus_F_contig13496:976..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_002900.1
Exons2
Model size852
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929089.8703077-CDS-H-canaliculatus_F_contig13496:975..17341622929089.8703077-CDS-H-canaliculatus_F_contig13496:975..1734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13496 976..1734 -
1696845675.5063345-CDS-H-canaliculatus_F_contig13496:975..17341696845675.5063345-CDS-H-canaliculatus_F_contig13496:975..1734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13496 976..1734 -
1622929089.8847764-CDS-H-canaliculatus_F_contig13496:2908..30011622929089.8847764-CDS-H-canaliculatus_F_contig13496:2908..3001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13496 2909..3001 -
1696845675.5240586-CDS-H-canaliculatus_F_contig13496:2908..30011696845675.5240586-CDS-H-canaliculatus_F_contig13496:2908..3001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13496 2909..3001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13496.2830.1prot_H-canaliculatus_F_contig13496.2830.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13496 976..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13496.2830.1

>prot_H-canaliculatus_F_contig13496.2830.1 ID=prot_H-canaliculatus_F_contig13496.2830.1|Name=mRNA_H-canaliculatus_F_contig13496.2830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=284bp
ATGETATLWCLKDFVCGKETQAAMETLCRSHRHKAGRLASHRGVRAGEAI
FRRRYSSSSPSSSSSLQTATPSQNASQAARQPAATVVVAAAAAAAATASS
AAAATAAASQARDDGASSRPRSIGSGSELNADGPNAGECPSTPPGAGSRD
DGSMSTANGPVPNADETPCVAKAPESSADGSPSAAHGSGPIANGFGSGNG
GSLSAADGARPSPAGSASPDVDGSPSNPNGFGSDADGGGSTATGCSNNWA
GPSGHRSGRSALPVSSGGSSPARSSGVGGGGASG
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mRNA from alignment at H-canaliculatus_F_contig13496:976..3001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13496.2830.1 ID=mRNA_H-canaliculatus_F_contig13496.2830.1|Name=mRNA_H-canaliculatus_F_contig13496.2830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13496:976..3001- (Hapterophycus canaliculatus Oshoro5f female)
GCCACCGGGGAGACGGCTACGCTGTGGTGCCTCAAGGACTTTGTCTGCGG
GAAGGAGACGCAGGCTGCGATGGAAACCCTCTGCAGATCGCACGTGCGTA
TCGAACCTATCCGCTTCGCCGGCCGCATCGCCCGTATCTGCCGTGCGCGT
ATCCTGCGCACCAAGCTTTACCCTTTTCTTTTCTTTTTTTGTCATGTTGC
TGCTGCTTTTTTTTAGATTCCCAGGTTTCCTTTTTTTTTTCACGTCTTTT
TTGCTCTGACCTATGCGAGTGAGACAGCGCCGGGAAGCGCGGCCCTCTTG
GGTGGTACAATAATTATCTGTTCTGTGCTTTCGTCTTGAGGGACCCCGGC
TGGTACGTCCTGATCTAGAGCCCGTTGCACAGAGACCGCCATAAACCGAA
ATGTGTATGTGCGCACCTACACCGAAACGTGTGAATATAAATATACTGTA
CCGGAAGAGGAGGAGAAGGACCATTAGGCCCGAATAGACGGTATAAAGAA
GAAGAAGAAAAAAGTACTTCTGTGCTGTACCCTGGAGCGCACTTTTCAAA
CGCTCCTCCGGCGAGATTTAGGAGAACGCCGCTGAACTCCCGAAAGGGTC
TCCTCCCGTCGAACAGAGCTGGGTTTGGGTTTGAGGAGGCTTTCGGGTAG
CAAGCCCGAGTGTTTTTTTTGTCGATGGTATTCCAGGGACCTTCCTCCGT
TTCCCGTCCTGTATCTCGCGGGTGAATGGCCCGAAGCTGGTGCCTGCAGC
GTGCTGCTGGAAGCCCACTTTCGTGCGACGTAGGTGCACCACAAGCGTCC
CTGGGCGAGTCACGCCTCCAAATCCCTATTCAGCTCCGATACCGTCTTGA
CAGGTGTTTTTAGTTTTTAGTTTTTTTTCTAGTTGTCCCTCTTGCACGCG
CTCTTGTTCCCCCTTGACGGTGGGCGAGAACGTTTCCAACAGCACGGCCG
CGTCTTTTTTCACGCCGTGCTTCTCGCTGGGCGTGGCGGTTTCCGGCACA
AGTTCGCTCTTCCCGACCGACCGACTGCTGCTTTCCTTTTCTTGCTTTCC
ATCATCGGGGAGCAGGTGCCACAGGCCGCCGTCTTGCCCCCCTTGCCCTC
TCGCCCCGACTTGTCGCTCCCCCTGTCGCTGACAACGAGCACCCGCCCGC
GGCCTCCTCGTCACGATCGACCTCCCCCCTCATACACAACTTGTGAAACT
TCCCACACACCCCAACCCTCCCCGCCGATGCCCCCCGTTGCTGCCCCCTT
CTGCCGCCGAATTTCAGCGACACAAGGCCGGTCGATTGGCGAGCCACAGA
GGGGTGAGGGCTGGCGAAGCCATTTTTCGTCGCCGGTACTCTTCCTCCTC
GCCCTCCTCGTCCTCCTCCCTACAAACCGCCACCCCCAGTCAAAACGCCT
CCCAAGCTGCTCGGCAGCCTGCCGCTACCGTCGTCGTCGCCGCCGCCGCC
GCCGCCGCCGCCACCGCTTCTTCTGCCGCCGCCGCTACCGCCGCCGCTTC
GCAAGCGCGCGACGACGGGGCTTCGTCTAGGCCGCGTTCGATCGGATCAG
GGTCCGAGCTAAACGCCGACGGACCGAACGCTGGGGAATGTCCGTCGACG
CCCCCAGGGGCGGGATCAAGGGACGATGGGTCCATGTCTACCGCGAACGG
TCCCGTGCCGAACGCCGACGAAACGCCGTGCGTGGCCAAAGCGCCGGAGT
CGAGCGCCGACGGCTCCCCGTCCGCGGCCCACGGATCCGGACCGATCGCC
AACGGGTTCGGGTCCGGGAACGGCGGATCGCTGTCGGCCGCCGACGGAGC
TAGGCCAAGCCCCGCCGGATCGGCGTCACCGGACGTGGACGGATCTCCGT
CGAACCCCAACGGGTTTGGGTCGGATGCCGACGGAGGCGGGTCAACCGCC
ACCGGGTGCTCCAACAATTGGGCCGGGCCTAGCGGCCACAGGTCAGGACG
CAGCGCCCTGCCCGTTTCGAGCGGCGGATCGTCGCCGGCGCGGTCGTCGG
GGGTAGGAGGGGGAGGCGCAAGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13496:976..3001-

>mRNA_H-canaliculatus_F_contig13496.2830.1 ID=mRNA_H-canaliculatus_F_contig13496.2830.1|Name=mRNA_H-canaliculatus_F_contig13496.2830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1704bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13496:976..3001- (Hapterophycus canaliculatus Oshoro5f female)
GCCACCGGGGAGACGGCTACGCTGTGGTGCCTCAAGGACTTTGTCTGCGG
GAAGGAGACGCAGGCTGCGATGGAAACCCTCTGCAGATCGCACGCCACCG
GGGAGACGGCTACGCTGTGGTGCCTCAAGGACTTTGTCTGCGGGAAGGAG
ACGCAGGCTGCGATGGAAACCCTCTGCAGATCGCACCGACACAAGGCCGG
TCGATTGGCGAGCCACAGAGGGGTGAGGGCTGGCGAAGCCATTTTTCGTC
GCCGGTACTCTTCCTCCTCGCCCTCCTCGTCCTCCTCCCTACAAACCGCC
ACCCCCAGTCAAAACGCCTCCCAAGCTGCTCGGCAGCCTGCCGCTACCGT
CGTCGTCGCCGCCGCCGCCGCCGCCGCCGCCACCGCTTCTTCTGCCGCCG
CCGCTACCGCCGCCGCTTCGCAAGCGCGCGACGACGGGGCTTCGTCTAGG
CCGCGTTCGATCGGATCAGGGTCCGAGCTAAACGCCGACGGACCGAACGC
TGGGGAATGTCCGTCGACGCCCCCAGGGGCGGGATCAAGGGACGATGGGT
CCATGTCTACCGCGAACGGTCCCGTGCCGAACGCCGACGAAACGCCGTGC
GTGGCCAAAGCGCCGGAGTCGAGCGCCGACGGCTCCCCGTCCGCGGCCCA
CGGATCCGGACCGATCGCCAACGGGTTCGGGTCCGGGAACGGCGGATCGC
TGTCGGCCGCCGACGGAGCTAGGCCAAGCCCCGCCGGATCGGCGTCACCG
GACGTGGACGGATCTCCGTCGAACCCCAACGGGTTTGGGTCGGATGCCGA
CGGAGGCGGGTCAACCGCCACCGGGTGCTCCAACAATTGGGCCGGGCCTA
GCGGCCACAGGTCAGGACGCAGCGCCCTGCCCGTTTCGAGCGGCGGATCG
TCGCCGGCGCGGTCGTCGGGGGTAGGAGGGGGAGGCGCAAGCGGGCGACA
CAAGGCCGGTCGATTGGCGAGCCACAGAGGGGTGAGGGCTGGCGAAGCCA
TTTTTCGTCGCCGGTACTCTTCCTCCTCGCCCTCCTCGTCCTCCTCCCTA
CAAACCGCCACCCCCAGTCAAAACGCCTCCCAAGCTGCTCGGCAGCCTGC
CGCTACCGTCGTCGTCGCCGCCGCCGCCGCCGCCGCCGCCACCGCTTCTT
CTGCCGCCGCCGCTACCGCCGCCGCTTCGCAAGCGCGCGACGACGGGGCT
TCGTCTAGGCCGCGTTCGATCGGATCAGGGTCCGAGCTAAACGCCGACGG
ACCGAACGCTGGGGAATGTCCGTCGACGCCCCCAGGGGCGGGATCAAGGG
ACGATGGGTCCATGTCTACCGCGAACGGTCCCGTGCCGAACGCCGACGAA
ACGCCGTGCGTGGCCAAAGCGCCGGAGTCGAGCGCCGACGGCTCCCCGTC
CGCGGCCCACGGATCCGGACCGATCGCCAACGGGTTCGGGTCCGGGAACG
GCGGATCGCTGTCGGCCGCCGACGGAGCTAGGCCAAGCCCCGCCGGATCG
GCGTCACCGGACGTGGACGGATCTCCGTCGAACCCCAACGGGTTTGGGTC
GGATGCCGACGGAGGCGGGTCAACCGCCACCGGGTGCTCCAACAATTGGG
CCGGGCCTAGCGGCCACAGGTCAGGACGCAGCGCCCTGCCCGTTTCGAGC
GGCGGATCGTCGCCGGCGCGGTCGTCGGGGGTAGGAGGGGGAGGCGCAAG
CGGG
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