mRNA_H-canaliculatus_F_contig13420.2784.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13420.2784.1
Unique NamemRNA_H-canaliculatus_F_contig13420.2784.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13420.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13420contigH-canaliculatus_F_contig13420:2754..3006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.7367666-CDS-H-canaliculatus_F_contig13420:2755..29031622929082.7367666-CDS-H-canaliculatus_F_contig13420:2755..2903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13420 2756..2903 -
1696845672.6661196-CDS-H-canaliculatus_F_contig13420:2755..29031696845672.6661196-CDS-H-canaliculatus_F_contig13420:2755..2903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13420 2756..2903 -
1622929082.7515283-CDS-H-canaliculatus_F_contig13420:2917..30061622929082.7515283-CDS-H-canaliculatus_F_contig13420:2917..3006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13420 2918..3006 -
1696845672.6744058-CDS-H-canaliculatus_F_contig13420:2917..30061696845672.6744058-CDS-H-canaliculatus_F_contig13420:2917..3006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13420 2918..3006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13420.2784.1prot_H-canaliculatus_F_contig13420.2784.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13420 2756..3006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13420.2784.1

>prot_H-canaliculatus_F_contig13420.2784.1 ID=prot_H-canaliculatus_F_contig13420.2784.1|Name=mRNA_H-canaliculatus_F_contig13420.2784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=79bp
ISPPPLPSERGGGREDPRFLLPFPAAEWRRNGPTPPRRRWPRGAQIFTLV
GVGRIPFVGRLDVLGAGLVRRTIGLVFVA
back to top

mRNA from alignment at H-canaliculatus_F_contig13420:2754..3006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13420.2784.1 ID=mRNA_H-canaliculatus_F_contig13420.2784.1|Name=mRNA_H-canaliculatus_F_contig13420.2784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=253bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13420:2754..3006- (Hapterophycus canaliculatus Oshoro5f female)
ATCTCGCCACCACCGCTGCCATCCGAGAGGGGCGGGGGCAGGGAAGATCC
TCGCTTCCTCTTGCCGTTCCCCGCCGCCGAGTGGCGGCGGCGATCGCCGG
GAGGAATGGACCCACCCCTCCCCGCCGGAGATGGCCACGTGGTGCACAGA
TCTTCACTCTGGTCGGAGTCGGTAGAATTCCCTTCGTCGGAAGGTTGGAC
GTACTCGGAGCCGGACTCGTCAGGCGCACCATCGGACTCGTCTTCGTCGC
CCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13420:2754..3006-

>mRNA_H-canaliculatus_F_contig13420.2784.1 ID=mRNA_H-canaliculatus_F_contig13420.2784.1|Name=mRNA_H-canaliculatus_F_contig13420.2784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13420:2754..3006- (Hapterophycus canaliculatus Oshoro5f female)
ATCTCGCCACCACCGCTGCCATCCGAGAGGGGCGGGGGCAGGGAAGATCC
TCGCTTCCTCTTGCCGTTCCCCGCCGCCGAGTGGCGGCGATCTCGCCACC
ACCGCTGCCATCCGAGAGGGGCGGGGGCAGGGAAGATCCTCGCTTCCTCT
TGCCGTTCCCCGCCGCCGAGTGGCGGCGGAATGGACCCACCCCTCCCCGC
CGGAGATGGCCACGTGGTGCACAGATCTTCACTCTGGTCGGAGTCGGTAG
AATTCCCTTCGTCGGAAGGTTGGACGTACTCGGAGCCGGACTCGTCAGGC
GCACCATCGGACTCGTCTTCGTCGCCGAATGGACCCACCCCTCCCCGCCG
GAGATGGCCACGTGGTGCACAGATCTTCACTCTGGTCGGAGTCGGTAGAA
TTCCCTTCGTCGGAAGGTTGGACGTACTCGGAGCCGGACTCGTCAGGCGC
ACCATCGGACTCGTCTTCGTCGCC
back to top