mRNA_H-canaliculatus_F_contig134.2765.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig134.2765.1
Unique NamemRNA_H-canaliculatus_F_contig134.2765.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig134.2765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig134contigH-canaliculatus_F_contig134:19081..20011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig134.2765.1prot_H-canaliculatus_F_contig134.2765.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig134 19231..19916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.7420893-UTR-H-canaliculatus_F_contig134:19080..192301622929077.7420893-UTR-H-canaliculatus_F_contig134:19080..19230Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 19081..19230 -
1696845671.2695127-UTR-H-canaliculatus_F_contig134:19080..192301696845671.2695127-UTR-H-canaliculatus_F_contig134:19080..19230Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 19081..19230 -
1622929077.8002567-UTR-H-canaliculatus_F_contig134:19916..200111622929077.8002567-UTR-H-canaliculatus_F_contig134:19916..20011Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 19917..20011 -
1696845671.297977-UTR-H-canaliculatus_F_contig134:19916..200111696845671.297977-UTR-H-canaliculatus_F_contig134:19916..20011Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 19917..20011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.763174-CDS-H-canaliculatus_F_contig134:19230..195131622929077.763174-CDS-H-canaliculatus_F_contig134:19230..19513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 19231..19513 -
1696845671.2804794-CDS-H-canaliculatus_F_contig134:19230..195131696845671.2804794-CDS-H-canaliculatus_F_contig134:19230..19513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 19231..19513 -
1622929077.781018-CDS-H-canaliculatus_F_contig134:19908..199161622929077.781018-CDS-H-canaliculatus_F_contig134:19908..19916Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 19909..19916 -
1696845671.2898304-CDS-H-canaliculatus_F_contig134:19908..199161696845671.2898304-CDS-H-canaliculatus_F_contig134:19908..19916Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 19909..19916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig134.2765.1

>prot_H-canaliculatus_F_contig134.2765.1 ID=prot_H-canaliculatus_F_contig134.2765.1|Name=mRNA_H-canaliculatus_F_contig134.2765.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
MVENLFDTWCFGRSFTCLDGVSGIELMSCGRSRPDRGGGILSNTSVHAGL
MGGFERTQQSWYDNLANFPSVRLQHPARLEVLPAFDGKWEHRRVLD*
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mRNA from alignment at H-canaliculatus_F_contig134:19081..20011-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig134.2765.1 ID=mRNA_H-canaliculatus_F_contig134.2765.1|Name=mRNA_H-canaliculatus_F_contig134.2765.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=931bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:19081..20011- (Hapterophycus canaliculatus Oshoro5f female)
GTGTGCATAGACGAGCGATGTGCTAGAGATCAGAGCGCTCATGTGTCTCT
CTGAAAGACGGCACGCATGACGGGTCATGCGGTCGAGTCAGCAATATGGT
TGAGTATATCTTATCAGTCACGCCGCCATCTGTGCCCTCGGATACCGATT
TAGAAGATGTTTACTACAGGGGTGATCGGCGACAGTATTGTGAAGAATCA
GGAAGGACAAAGGCCGCACAAGACCTCAAGCATTCAGTTCCACAGCAAAA
TATGTGGGTTGTGAGGCAGGCGCAATGTCTCCTGCATGTAGATGTCGATC
GATTCGGTGGACAATTGAGTTTATTTCCTAGTCCCACGCACAAGTGTTTT
ACAGGCAGCACCAGTCCCACGCACACATGCTTGCCTTGCAGACAGCAGTA
GGTGGCTGACAAAAAAGGTGTACCCGGGTAGATTAGGGATGGGGTCAGAT
TTTACGGATACATTCAAAAGCATTTGCGCTGATTCGGCGGGCATTCAGAA
ACCTCTTCGATACTTGGTGTTTTGGACGCTCTTTCACATGTCTGGATGGT
GTTTCCGGGATCGAGCTGATGTCGTGTGGGAGAAGCAGGCCCGACAGAGG
GGGTGGTATCTTAAGCAACACTTCGGTGCACGCAGGTCTCATGGGAGGGT
TTGAACGAACTCAGCAGTCATGGTACGACAACCTGGCCAACTTTCCTAGT
GTCCGTCTTCAACACCCAGCACGGCTGGAGGTACTTCCTGCATTCGATGG
TAAGTGGGAACATCGTAGGGTACTAGACTAAAGGTACAGCAGTACCTCTA
CCAAGGACACTTCAACAACCCTGGCCGAATCGATCTGTCTTACTTGAAGA
AGACGCAAAGTAGGCTGCTTGGTGCGGACTCCTACTATGTGCAGCGACGC
CAGGCGTGATGCTTGAGCGCCGTATACTCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig134:19081..20011-

>mRNA_H-canaliculatus_F_contig134.2765.1 ID=mRNA_H-canaliculatus_F_contig134.2765.1|Name=mRNA_H-canaliculatus_F_contig134.2765.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:19081..20011- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGAATGGTTGAAAACCTCTTCGATACTTGGTGTTTTGGACGCTCT
TTCACATGTCTGGATGGTGTTTCCGGGATCGAGCTGATGTCGTGTGGGAG
AAGCAGGCCCGACAGAGGGGGTGGTATCTTAAGCAACACTTCGGTGCACG
CAGGTCTCATGGGAGGGTTTGAACGAACTCAGCAGTCATGGTACGACAAC
CTGGCCAACTTTCCTAGTGTCCGTCTTCAACACCCAGCACGGCTGGAGGT
ACTTCCTGCATTCGATGGTAAGTGGGAACATCGTAGGGTACTAGACTAAA
AACCTCTTCGATACTTGGTGTTTTGGACGCTCTTTCACATGTCTGGATGG
TGTTTCCGGGATCGAGCTGATGTCGTGTGGGAGAAGCAGGCCCGACAGAG
GGGGTGGTATCTTAAGCAACACTTCGGTGCACGCAGGTCTCATGGGAGGG
TTTGAACGAACTCAGCAGTCATGGTACGACAACCTGGCCAACTTTCCTAG
TGTCCGTCTTCAACACCCAGCACGGCTGGAGGTACTTCCTGCATTCGATG
GTAAGTGGGAACATCGTAGGGTACTAGACTAA
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