mRNA_H-canaliculatus_F_contig13394.2759.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13394.2759.1
Unique NamemRNA_H-canaliculatus_F_contig13394.2759.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13394.2759.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.190e-61
Identity = 131/214 (61.21%), Postives = 138/214 (64.49%), Query Frame = 1 
Query:    1 RYASG--RPALSKRYEFALVLNPNDEYRDAVEVLELALDLGEGTTGAADGAXXXXXXXXXXXXASPQKLDKAKRVRESLGGLQXXXXXXXXXRQASPDRSGASDSPPGLSTSQSGPGSGRKGAAAGGPPVVRPGLSEGLEG-GGGRRARLSLLDDLQEEEGRLTSRRKKELERRKKHRLFHFMVKMKEGIIVRRHLAHRTCDQVVLQSTVSGCR 633
            RY SG  R A +  YEFALVLNPNDEYRDAVEVLELALDLG+G  G                  SPQKLDK KR                                       SGPGSGRKG   GGPPVVRPGLSEGLEG GGGRR RLSLLDDLQEEEGRLTSRRKKELER+KKHRLFHF+ KM+EG+IVRRHLAHRTCDQ+VLQST   CR
Sbjct:   13 RYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVT---------------TSPQKLDKVKR---------------------------------------SGPGSGRKGG--GGPPVVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQST-DDCR 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13394.2759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM1_ECTSI1.190e-6161.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13394contigH-canaliculatus_F_contig13394:570..2885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004370.1
Hectar predicted targeting categoryother localisation
Exons3
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13394.2759.1prot_H-canaliculatus_F_contig13394.2759.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13394 570..2885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.3959699-CDS-H-canaliculatus_F_contig13394:569..7371622929077.3959699-CDS-H-canaliculatus_F_contig13394:569..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 570..737 -
1696845671.1353612-CDS-H-canaliculatus_F_contig13394:569..7371696845671.1353612-CDS-H-canaliculatus_F_contig13394:569..737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 570..737 -
1622929077.4105752-CDS-H-canaliculatus_F_contig13394:1613..17921622929077.4105752-CDS-H-canaliculatus_F_contig13394:1613..1792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 1614..1792 -
1696845671.147489-CDS-H-canaliculatus_F_contig13394:1613..17921696845671.147489-CDS-H-canaliculatus_F_contig13394:1613..1792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 1614..1792 -
1622929077.4307668-CDS-H-canaliculatus_F_contig13394:2593..28851622929077.4307668-CDS-H-canaliculatus_F_contig13394:2593..2885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 2594..2885 -
1696845671.1622338-CDS-H-canaliculatus_F_contig13394:2593..28851696845671.1622338-CDS-H-canaliculatus_F_contig13394:2593..2885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13394 2594..2885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13394.2759.1

>prot_H-canaliculatus_F_contig13394.2759.1 ID=prot_H-canaliculatus_F_contig13394.2759.1|Name=mRNA_H-canaliculatus_F_contig13394.2759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=213bp
RYASGRPALSKRYEFALVLNPNDEYRDAVEVLELALDLGEGTTGAADGAA
AVGGGGAKKTTASPQKLDKAKRVRESLGGLQQQHHHHNHQRQASPDRSGA
SDSPPGLSTSQSGPGSGRKGAAAGGPPVVRPGLSEGLEGGGGRRARLSLL
DDLQEEEGRLTSRRKKELERRKKHRLFHFMVKMKEGIIVRRHLAHRTCDQ
VVLQSTVSGCRL*
back to top

mRNA from alignment at H-canaliculatus_F_contig13394:570..2885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13394.2759.1 ID=mRNA_H-canaliculatus_F_contig13394.2759.1|Name=mRNA_H-canaliculatus_F_contig13394.2759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2316bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13394:570..2885- (Hapterophycus canaliculatus Oshoro5f female)
CGTTACGCTTCGGGTCGTCCCGCGCTGTCGAAAAGGTACGAGTTCGCCTT
GGTCCTGAACCCCAACGACGAGTACCGCGACGCCGTGGAGGTGCTGGAGC
TGGCGCTCGACCTCGGCGAGGGCACGACGGGGGCGGCGGACGGGGCGGCG
GCGGTGGGGGGGGGCGGTGCGAAGAAGACGACGGCGAGCCCCCAGAAGCT
GGACAAGGCCAAGCGGGTCAGGGAGAGCCTCGGGGGGCTGCAGCAGCAGC
ACCACCACCACAACCACCAGCGGCAAGCGTCGCCCGACAGATGTGAGTCG
TGGTGCGGGTTGGAGGTCGGCTCGTACGCGAAGCTCGTTCGCGTGTATTT
GAGAGTCGAGGGAAACGGTCCGAACATGAGGAGGAGGCGACGCGGATTCC
GTTTTTGGTGGAGAAAGAGGATTCGCTCGCTGTGCCCGGGGGCCTGCAAG
ATAATGAGGGGCGCCGGAGATGTGCCCTCCAAGACGGAGGCGCCCGGTGA
AACGTTTGTGAAACGCTTGTGAAACGATGCCGGAGGTCTCGTCCTAATGT
GGCAGGCGTTTCTTTTCAGGGCGGTCTTGGGGAGAGGGAACCGGGATATG
CGATACAACACTGTCTGCGGAAAGGTCTGCTGCGCGGGCCAGACCCGCAC
GAGGAATAGGGATCATGATCATTGGAAACGTCACACCCTCTACGTTGCCA
GGACAACCAAGCAAGAAGAGAGCTGTCCATAGCTGTACAGTAGTAAGGGC
AGAAATGAGGTGTTCGATACCGACGACCCACCGCGGCTTGGCTGGCTCTT
CTCGTCCATCGACTCCTGCACCCACGTAGATTCGCCCTCGATGTTGCGCT
GGCACAGTGCTGCAACCACCCCTGCTCCCAAACGCCACCCGCTTTCCGAA
CACGGGCGAAGGCCTCTCTCTATTTTTTTTTTTTCTTCCGCCCCACAGAA
CCCTCCCGCATCCGTGAAGCCGTTGACAAACCATCTTCTCCGACCGATCT
CTCGCATCACCAAGCGACGCAAGCCCCCCCGCGCCTGACGCACGCGTTTG
CGGGTCTGCGTGTTCCGTTTGTGCACCACGACAACAACAGCAGCGGGCGC
GTCCGATAGCCCGCCGGGACTGTCGACCTCGCAGAGCGGCCCCGGCAGCG
GGCGCAAGGGAGCGGCTGCGGGGGGCCCTCCGGTAGTGAGGCCCGGTCTC
TCGGAAGGGTTGGAGGGGGGCGGCGGGCGCCGGGCGAGGTTGAGCTTGCT
GGACGATCTCCAGGAGGAGGAGGTGAGTGCGCGCGTGCGTGTGTAGCGTG
CGTGCGTTGTGGCTGTCGACCTGATTTCTCCCCTCTTCGTGCTCCGGTGC
TTCAATCAAGGCCACCCGCCCCGATGAAGCAGGCACGGGCCCCCCCGAAA
GTGCGCGAAGGAGATCGCCGTGCGGTCTTTCGTGAGGGTCGACCGTCGGC
GACGACTGCCGGGGTCGGTCGCTGCCTCCCCGAAGCCCCGTTCTTCGTTG
TCGCCTCGAACGATGTCGTTCGAGCGTGCTTTGAAGCTGTTCGTGGGTTT
CGTCGGTCGAGAAAACCCACGCGTAGGGTGGGAACACGCACTTCCGTTCT
ACGCGATCACGATCTACTGCATGCTTACAACCACGCATGATAAACCCTTT
GCAGATGCCGAGGCGAAGCGTTTCGTTTCGCGGTCCCGGCGTTGACCGGC
TCACGATGCCCCCGAAAGGGAGGCTTCCTTGTATGCCTGCCCGTTCGATG
GTCCATCGGTCGGTCGGTGGTAACCACCTCGGTCTCGAAGAGCAGGCAAT
CTAACCCGCTGAATTTACGCTCATCTCTTTGTGTGCGTATGTGCATGTGC
GTGTGCGTGCGTGTGCGTCTTTTTTCCTACTCCAACGGCCCGCGGGGGGC
TGGCGTCGAAATAAAAATAAAAATGAACGCTATCAGCCCTCGACCCCGGG
GCACTAGAAAAAAAAATAAGAATGAACGCTATCAGCCCTCGACCCCCGGG
CACTAGAAACAAACAAAATGAGCGCTATCAGCCCTCAACCCCGGGGCACT
AGAAAAAAATAAAAATGAACGCTATCAGCCCTCAACTGGGACGCCGCTCA
GTGCGCCAAGCGGGTCTGTGTCTGTCCCGACCCTTGTTCCGCTTGCAGGG
GCGGCTGACAAGCCGGAGGAAGAAGGAGCTCGAACGACGGAAGAAGCACA
GGCTGTTCCACTTCATGGTCAAGATGAAGGAGGGGATCATCGTGAGGAGG
CACCTAGCGCACCGGACCTGCGACCAGGTCGTGCTGCAGAGTACCGTGAG
TGGCTGTCGGCTGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13394:570..2885-

>mRNA_H-canaliculatus_F_contig13394.2759.1 ID=mRNA_H-canaliculatus_F_contig13394.2759.1|Name=mRNA_H-canaliculatus_F_contig13394.2759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1278bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13394:570..2885- (Hapterophycus canaliculatus Oshoro5f female)
CGTTACGCTTCGGGTCGTCCCGCGCTGTCGAAAAGGTACGAGTTCGCCTT
GGTCCTGAACCCCAACGACGAGTACCGCGACGCCGTGGAGGTGCTGGAGC
TGGCGCTCGACCTCGGCGAGGGCACGACGGGGGCGGCGGACGGGGCGGCG
GCGGTGGGGGGGGGCGGTGCGAAGAAGACGACGGCGAGCCCCCAGAAGCT
GGACAAGGCCAAGCGGGTCAGGGAGAGCCTCGGGGGGCTGCAGCAGCAGC
ACCACCACCACAACCACCAGCGGCAAGCGTCGCCCGACAGATCGTTACGC
TTCGGGTCGTCCCGCGCTGTCGAAAAGGTACGAGTTCGCCTTGGTCCTGA
ACCCCAACGACGAGTACCGCGACGCCGTGGAGGTGCTGGAGCTGGCGCTC
GACCTCGGCGAGGGCACGACGGGGGCGGCGGACGGGGCGGCGGCGGTGGG
GGGGGGCGGTGCGAAGAAGACGACGGCGAGCCCCCAGAAGCTGGACAAGG
CCAAGCGGGTCAGGGAGAGCCTCGGGGGGCTGCAGCAGCAGCACCACCAC
CACAACCACCAGCGGCAAGCGTCGCCCGACAGATCGGGCGCGTCCGATAG
CCCGCCGGGACTGTCGACCTCGCAGAGCGGCCCCGGCAGCGGGCGCAAGG
GAGCGGCTGCGGGGGGCCCTCCGGTAGTGAGGCCCGGTCTCTCGGAAGGG
TTGGAGGGGGGCGGCGGGCGCCGGGCGAGGTTGAGCTTGCTGGACGATCT
CCAGGAGGAGGAGCGGGCGCGTCCGATAGCCCGCCGGGACTGTCGACCTC
GCAGAGCGGCCCCGGCAGCGGGCGCAAGGGAGCGGCTGCGGGGGGCCCTC
CGGTAGTGAGGCCCGGTCTCTCGGAAGGGTTGGAGGGGGGCGGCGGGCGC
CGGGCGAGGTTGAGCTTGCTGGACGATCTCCAGGAGGAGGAGGGGCGGCT
GACAAGCCGGAGGAAGAAGGAGCTCGAACGACGGAAGAAGCACAGGCTGT
TCCACTTCATGGTCAAGATGAAGGAGGGGATCATCGTGAGGAGGCACCTA
GCGCACCGGACCTGCGACCAGGTCGTGCTGCAGAGTACCGTGAGTGGCTG
TCGGCTGTGAGGGCGGCTGACAAGCCGGAGGAAGAAGGAGCTCGAACGAC
GGAAGAAGCACAGGCTGTTCCACTTCATGGTCAAGATGAAGGAGGGGATC
ATCGTGAGGAGGCACCTAGCGCACCGGACCTGCGACCAGGTCGTGCTGCA
GAGTACCGTGAGTGGCTGTCGGCTGTGA
back to top