mRNA_H-canaliculatus_F_contig1338.2748.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1338.2748.1
Unique NamemRNA_H-canaliculatus_F_contig1338.2748.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.570e-32
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:   19 IFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            IF  PLPG+LLIWFKP AV WFNISFAVPSI FG+V MR W+KQ +   CQR  +IQSY+HLYA+KD IM T +PWVPTG
Sbjct: 1071 IFTGPLPGMLLIWFKPEAVLWFNISFAVPSILFGYVGMRFWAKQPYDFCCQRVKVIQSYSHLYALKDKIMNTTIPWVPTG 1150
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: D7G9A2_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.110e-22
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:   19 IFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            +F+APLP +LL+W +   V W++  FA+PS+ F  +V+ +WSKQ +G+ C R  IIQ YAHLYA+KD+++  + PWVP+G
Sbjct: 1022 LFMAPLPIMLLVWVEADGVLWYHSGFALPSLIFAAIVLPLWSKQRYGMACHRVKIIQYYAHLYAVKDSLLGLSAPWVPSG 1101
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A6H5K7X7_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.940e-22
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:   19 IFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            +F+APLP +LL+W +   V W++  FA+PS+ F  +++ +WSKQ +G+ C R  IIQ YAHLYA+KD+++  + PWVP+G
Sbjct: 1124 LFMAPLPIMLLVWVEADGVLWYHSGFALPSLIFAGIILPLWSKQRYGMACHRVKIIQYYAHLYAVKDSLLGLSAPWVPSG 1203
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A2P5HG18_9PEZI (Glyco_trans_2-like domain-containing protein n=2 Tax=Diaporthe TaxID=36922 RepID=A0A2P5HG18_9PEZI)

HSP 1 Score: 97.4 bits (241), Expect = 9.750e-22
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V  GIFV+P+PGILL+WF+P    ++N++FA+PS+F+G VV R+WSK  +G+  Q   +IQSYA+L AIKD +    + W  +G
Sbjct:  516 SAVSLGIFVSPIPGILLLWFRPEWFKYYNLAFAIPSLFYGLVVFRVWSKASYGMNVQHIMLIQSYAYLTAIKDRVFNIELMWAASG 601
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A8E2JPB3_9PEZI (Glycosyltransferase family 2 protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2JPB3_9PEZI)

HSP 1 Score: 97.1 bits (240), Expect = 1.360e-21
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V   IF++P+PGILL+WF+P    ++N++FA+PSI +G ++   W+K H+G   Q   +IQSYA+L AIKD I   A+ WVPTG
Sbjct:  894 SAVALSIFISPVPGILLLWFRPEFFKYYNLAFAIPSILYGILLFHFWAKAHYGFNVQHIMVIQSYAYLNAIKDKIFGKALMWVPTG 979
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A0G2HFZ5_9PEZI (Putative cellulose synthase catalytic subunit n=1 Tax=Diaporthe ampelina TaxID=1214573 RepID=A0A0G2HFZ5_9PEZI)

HSP 1 Score: 96.7 bits (239), Expect = 1.750e-21
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V  GIF++P+PGILL+WF+P    ++N++FAVPS+F+G V+ R+WSK  +G+  Q   +IQSYA+L AIKD +    + W  +G
Sbjct:  430 SAVSLGIFISPIPGILLLWFRPEWFKYYNLAFAVPSLFYGLVIFRVWSKASYGMNVQHIMLIQSYAYLTAIKDRLFNIELMWAASG 515
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BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: UPI001C7F593D (uncharacterized protein n=1 Tax=Diaporthe citri TaxID=83186 RepID=UPI001C7F593D)

HSP 1 Score: 96.7 bits (239), Expect = 1.800e-21
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V  GIF++P+PGILL+WF+P    ++N++FAVPS+F+G V+ R+WSK  +G+  Q   +IQSYA+L AIKD +    + W  +G
Sbjct:  483 SAVSLGIFISPIPGILLLWFRPEWFKYYNLAFAVPSLFYGLVIFRVWSKASYGMNVQHIMLIQSYAYLTAIKDRLFNIELMWAASG 568
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: UPI000CE19431 (uncharacterized protein LOC112021930 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE19431)

HSP 1 Score: 96.7 bits (239), Expect = 1.840e-21
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            T++   IFV+PLPGI++IW +P  V ++N++FA+PSIF+  + +R WSK  FG   Q   +IQSYA+L AIKD +   A+ WVP+G
Sbjct:  676 TAISLSIFVSPLPGIMMIWCRPEYVRFYNLAFAIPSIFYSIIAIRAWSKASFGFNAQFVMVIQSYAYLTAIKDRLFGRALAWVPSG 761
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A8E2E4K1_9PEZI (Glycosyltransferase family 2 protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2E4K1_9PEZI)

HSP 1 Score: 95.5 bits (236), Expect = 4.220e-21
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V   IF++P+PGILL+WF+P    ++N+SFAVPSI +G ++   W+K  +GL  Q   +IQSYA+L AIKD I   A+ WVPTG
Sbjct:  383 SAVALSIFISPIPGILLLWFRPIYFKYYNLSFAVPSILYGLLLFYFWAKAKYGLNVQHIMVIQSYAYLTAIKDKIFGRALMWVPTG 468
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Match: A0A6A6TWT6_9PEZI (Glyco_trans_2-like domain-containing protein n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6TWT6_9PEZI)

HSP 1 Score: 93.2 bits (230), Expect = 3.030e-20
Identity = 37/86 (43.02%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQHFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG 258
            ++V   IF++PLPGI+L+W +P    ++N++FA+PS+F+G ++  +W+K  +GL  Q   +IQS+A+L AIKD ++  A+ W PTG
Sbjct:  693 SAVSLSIFISPLPGIILLWIRPELFKYYNLAFALPSLFYGIILYPLWAKGRYGLNVQHIQVIQSFAYLNAIKDKLLGNALHWAPTG 778
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1338.2748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP53_ECTSI1.570e-3270.00Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
D7G9A2_ECTSI2.110e-2248.75Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A6H5K7X7_9PHAE3.940e-2247.50GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A2P5HG18_9PEZI9.750e-2247.67Glyco_trans_2-like domain-containing protein n=2 T... [more]
A0A8E2JPB3_9PEZI1.360e-2147.67Glycosyltransferase family 2 protein n=1 Tax=Gloni... [more]
A0A0G2HFZ5_9PEZI1.750e-2146.51Putative cellulose synthase catalytic subunit n=1 ... [more]
UPI001C7F593D1.800e-2146.51uncharacterized protein n=1 Tax=Diaporthe citri Ta... [more]
UPI000CE194311.840e-2148.84uncharacterized protein LOC112021930 n=1 Tax=Querc... [more]
A0A8E2E4K1_9PEZI4.220e-2150.00Glycosyltransferase family 2 protein n=1 Tax=Lepid... [more]
A0A6A6TWT6_9PEZI3.030e-2043.02Glyco_trans_2-like domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1338contigH-canaliculatus_F_contig1338:18009..18482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3e-27
Seed eggNOG ortholog2880.D7FP53
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.2751-CDS-H-canaliculatus_F_contig1338:18008..180751622929076.2751-CDS-H-canaliculatus_F_contig1338:18008..18075Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 18009..18075 -
1696845670.710025-CDS-H-canaliculatus_F_contig1338:18008..180751696845670.710025-CDS-H-canaliculatus_F_contig1338:18008..18075Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 18009..18075 -
1622929076.2967498-CDS-H-canaliculatus_F_contig1338:18291..184821622929076.2967498-CDS-H-canaliculatus_F_contig1338:18291..18482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 18292..18482 -
1696845670.720959-CDS-H-canaliculatus_F_contig1338:18291..184821696845670.720959-CDS-H-canaliculatus_F_contig1338:18291..18482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 18292..18482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1338.2748.1prot_H-canaliculatus_F_contig1338.2748.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1338 18009..18482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1338.2748.1

>prot_H-canaliculatus_F_contig1338.2748.1 ID=prot_H-canaliculatus_F_contig1338.2748.1|Name=mRNA_H-canaliculatus_F_contig1338.2748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
TSVHKGIFVAPLPGILLIWFKPGAVFWFNISFAVPSIFFGFVVMRIWSKQ
HFGLFCQRANIIQSYAHLYAIKDTIMRTAVPWVPTG
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mRNA from alignment at H-canaliculatus_F_contig1338:18009..18482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1338.2748.1 ID=mRNA_H-canaliculatus_F_contig1338.2748.1|Name=mRNA_H-canaliculatus_F_contig1338.2748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1338:18009..18482- (Hapterophycus canaliculatus Oshoro5f female)
ACATCGGTGCACAAGGGCATTTTCGTTGCTCCACTGCCCGGCATTCTTCT
AATCTGGTTCAAGCCCGGCGCCGTTTTTTGGTTCAACATTTCCTTCGCCG
TGCCATCCATCTTCTTCGGGTTCGTCGTCATGAGGATCTGGTCTAAGCAG
CATTTCGGCTTGTTCTGTCAGAGAGCAAACATCATTCAGAGGTATGGGAA
TCACTGGCGACGCTTGTGTAATTGAGAGTAGACACAGAGGTGAGTTCGTC
CTACGACGAAAGTCTAACATGCGCATGAGGGTAGGAAGTTCACTTGGCGC
AGCGGAGGCTCGCGGGTCAACCAGCGCACGGTCGACGCTCGCTTACACAG
TGTCCTCCGAAGGTCTGACCAATCTGCTCGCCTTCACTCGCCTCTCCTTG
TCCCCAGCTATGCCCACCTTTACGCCATCAAGGACACCATAATGCGCACG
GCCGTTCCTTGGGTCCCTACCGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1338:18009..18482-

>mRNA_H-canaliculatus_F_contig1338.2748.1 ID=mRNA_H-canaliculatus_F_contig1338.2748.1|Name=mRNA_H-canaliculatus_F_contig1338.2748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1338:18009..18482- (Hapterophycus canaliculatus Oshoro5f female)
ACATCGGTGCACAAGGGCATTTTCGTTGCTCCACTGCCCGGCATTCTTCT
AATCTGGTTCAAGCCCGGCGCCGTTTTTTGGTTCAACATTTCCTTCGCCG
TGCCATCCATCTTCTTCGGGTTCGTCGTCATGAGGATCTGGTCTAAGCAG
CATTTCGGCTTGTTCTGTCAGAGAGCAAACATCATTCAGAGACATCGGTG
CACAAGGGCATTTTCGTTGCTCCACTGCCCGGCATTCTTCTAATCTGGTT
CAAGCCCGGCGCCGTTTTTTGGTTCAACATTTCCTTCGCCGTGCCATCCA
TCTTCTTCGGGTTCGTCGTCATGAGGATCTGGTCTAAGCAGCATTTCGGC
TTGTTCTGTCAGAGAGCAAACATCATTCAGAGCTATGCCCACCTTTACGC
CATCAAGGACACCATAATGCGCACGGCCGTTCCTTGGGTCCCTACCGGAC
TATGCCCACCTTTACGCCATCAAGGACACCATAATGCGCACGGCCGTTCC
TTGGGTCCCTACCGGA
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