mRNA_H-canaliculatus_F_contig1332.2715.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1332.2715.1
Unique NamemRNA_H-canaliculatus_F_contig1332.2715.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1332.2715.1 vs. uniprot
Match: A0A6H5KVL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.690e-14
Identity = 48/79 (60.76%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:  797 PPTPPSPVEFQDLVLILDAPAMXXXXWKLPNLPEEVDAPWTDDLLDPNPSLSPLSPSTGVCDLSPDFHLSAPWSPLGGR 1033
            P TP +P  F DLVLILDAPA+    WKLPNLPEE DA  T        + + LSPS G CDLSP FHLSAPWSP  GR
Sbjct:  129 PETPATPAVFNDLVLILDAPALPPAPWKLPNLPEENDASCTGG------TTTDLSPSRG-CDLSPGFHLSAPWSPSKGR 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1332.2715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVL7_9PHAE2.690e-1460.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1332contigH-canaliculatus_F_contig1332:16534..20986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1052
Cds size783
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1332.2715.1prot_H-canaliculatus_F_contig1332.2715.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1332 16534..18548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.3277993-CDS-H-canaliculatus_F_contig1332:16533..168701622929071.3277993-CDS-H-canaliculatus_F_contig1332:16533..16870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 16534..16870 +
1696845668.6538599-CDS-H-canaliculatus_F_contig1332:16533..168701696845668.6538599-CDS-H-canaliculatus_F_contig1332:16533..16870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 16534..16870 +
1622929071.348036-CDS-H-canaliculatus_F_contig1332:17466..175351622929071.348036-CDS-H-canaliculatus_F_contig1332:17466..17535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 17467..17535 +
1696845668.6637242-CDS-H-canaliculatus_F_contig1332:17466..175351696845668.6637242-CDS-H-canaliculatus_F_contig1332:17466..17535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 17467..17535 +
1622929071.3895268-CDS-H-canaliculatus_F_contig1332:18171..185481622929071.3895268-CDS-H-canaliculatus_F_contig1332:18171..18548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 18172..18548 +
1696845668.6750667-CDS-H-canaliculatus_F_contig1332:18171..185481696845668.6750667-CDS-H-canaliculatus_F_contig1332:18171..18548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 18172..18548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.4103262-UTR-H-canaliculatus_F_contig1332:18548..186721622929071.4103262-UTR-H-canaliculatus_F_contig1332:18548..18672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1332 18549..18672 +
1696845668.688932-UTR-H-canaliculatus_F_contig1332:18548..186721696845668.688932-UTR-H-canaliculatus_F_contig1332:18548..18672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1332 18549..18672 +
1622929071.4297056-UTR-H-canaliculatus_F_contig1332:20841..209861622929071.4297056-UTR-H-canaliculatus_F_contig1332:20841..20986Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1332 20842..20986 +
1696845668.6983948-UTR-H-canaliculatus_F_contig1332:20841..209861696845668.6983948-UTR-H-canaliculatus_F_contig1332:20841..20986Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1332 20842..20986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1332.2715.1

>prot_H-canaliculatus_F_contig1332.2715.1 ID=prot_H-canaliculatus_F_contig1332.2715.1|Name=mRNA_H-canaliculatus_F_contig1332.2715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=261bp
CTLALQSDLPVVAFRALTTRNWQARCSSAQDYAFLVAEQQRAGEERSLSE
TSKAPTEETSPTGKRLPKTLKIEKPHHPHSFLPLSAPNAAPNVCSEHQVH
IISLPLHPAHPHACGDHVRGAHGRGHDRLERRGDGGTERVPRPPVLPAPE
QQAAIPPLRRATPAAPREAVPGRTDFDAIDVIVVIDSDDHDGELQPPSAP
VCAAARRRAKTIWEEREGRSSSARGRAFLLRGRPRRGGASAALRDACDGA
GLRRRLPGFY*
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mRNA from alignment at H-canaliculatus_F_contig1332:16534..20986+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1332.2715.1 ID=mRNA_H-canaliculatus_F_contig1332.2715.1|Name=mRNA_H-canaliculatus_F_contig1332.2715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4453bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:16534..20986+ (Hapterophycus canaliculatus Oshoro5f female)
TGCACACTTGCCCTGCAATCTGATCTCCCTGTTGTTGCATTCCGCGCTTT
GACCACGAGGAACTGGCAAGCAAGGTGCTCCTCTGCCCAAGATTACGCGT
TTTTAGTAGCCGAGCAGCAGCGTGCAGGAGAAGAAAGAAGCCTCAGCGAG
ACAAGCAAAGCCCCAACGGAGGAGACGAGCCCCACAGGGAAACGATTACC
GAAGACCCTGAAGATAGAGAAACCCCATCATCCACACAGCTTTCTTCCCC
TCTCAGCCCCCAACGCCGCACCGAACGTTTGTTCTGAGCACCAAGTTCAC
ATCATCAGTCTCCCGCTACACCCAGCACACCCTCATGGTGAGTCGTTGTA
CATGACGGGTCTACCCGTGGGCAACCACTGCGCGATGCCCGCGGGCTTCG
CTGTACATGTGCAGGGGTCTCGTGCGCATGAAATTCCAGACTCTCCTTTC
TGCCCTGCGTGATAAACGTTGCCTTCTCACAGTTGGCTACTGCTGCTGTC
TCTTCTCGGCGTTTTGACCTTTTTTTGGGCTCTGCATTTTTCTCCCCACG
CACCACCACAACAGCACCCATCATGGTCAAGGTGGACGGACGTGCGATGA
AAATACAATGAATAGGTGTTCGCAAGTGTTAGCTGCAGTTCTAAATTGTA
GGGACGATCAGCTCAACCTACCGTCTGGCGAATGATCTACGCGCCTGCGC
CGGCCGCGGCTATACCAATATCCGTGTGTGTGTGTTTCTGTCTGTCCGTG
TGTGCGTGTGTTTCTGTATCTTTCAGCATCTCTTTCGAACTCGGGCGATT
CGCCCTGCCTATTCGCTCTCCCTTCTTTTTCTTTGAGTTGTCCTTGATGA
TGGATACAGGGGTCCGCAAACTCAAGACGTACTTATTTGTTGCCTCCTTT
TATCCCGTTCCCCGTTCTATTCTTCTCCCCCAGCCTGCGGCGACCATGTA
CGCGGTGCTCACGGCCGTGGCCATGATCGGCTGGAACGTCGTGGTGACGG
AGGTATGTTCCAGCGAATGTGCGCACCCAGCGGCGGTGGTGGTGGTGGTG
TTGGGGGACCGACTTTTCGAAGAGATTTCTACCCGCTCCTGGTTCCCTCT
CCTCTCTCTCTGAAAAATATCAAAAAATCTCCGCCCGCTCGCCCTAAAAT
CTCCAAAATCTCCATCGTGTTCCCCACCAACCATGTGTTTAACAATTTCC
AACCAATGTAACAAGTTCAGTGCTGTTTTCGGGCTCTGGCCCCGTTTCTG
CTGTGCGGTAGCGCGCGCGGATCTCTTAACCTGCAGCACTGTAGCTGTGT
GGTGAACGCTCGTCGCACCCTCGACTACGATGACGCTGGCCTTCCTTTTC
GACTTCCTGCCTATGTAGTAGTCGAGCTTCTCCACTCTTCGAACTCGCTG
TCCTGGGGGGGCACGGGTACTCCCGTCGAACCGCATCGCCGGAGTCCAGA
ATCGATGACATCATCGTGTTCTTTTTTCTCGCCGAGCTACGGGACCGGCG
ACAGGCGAGATGCAACCAACGTTCACACACTACAAGGCACGATGATCGTT
CCCCCCGCACCACGCCCCCCTGAATGTATTGGTGAAATGCGCCCCGTTCG
TGCTTCTGTCGCGATGCTGGTCGGCTTTTGTTGCACAGGGACCGAAAGAG
TGCCCCGGCCGCCCGTACTCCCGGCGCCGGAGCAGCAGGCGGCGATTCCG
CCGCTACGGCGGGCGACGCCGGCAGCGCCACGGGAAGCCGTCCCGGGGCG
AACAGATTTCGACGCAATCGACGTCATCGTCGTCATCGACAGCGACGACC
ACGACGGAGAGCTTCAGCCCCCCTCGGCACCTGTCTGCGCGGCGGCACGG
AGAAGGGCGAAGACGATCTGGGAGGAGCGAGAGGGAAGGAGCAGCAGCGC
GAGGGGAAGGGCCTTCCTGCTGCGGGGCCGCCCCCGACGCGGCGGCGCAT
CAGCGGCCTTGCGGGACGCCTGTGACGGCGCCGGGCTCCGCCGACGGCTC
CCCGGTTTCTACTGAAGCGGTTTCTGCCCCGCCCACCCCGCCTTCGCCGG
TCGAGTTCCAAGACCTCGTCTTGATCCTCGATGCCCCCGCGATGCCGCCG
CCCCCCTGGAAGCTACCCAACCTCCCCGAAGAGGTCGACGTGAGTACAAT
TGTATCAACATCTCGAGAGTTTTTTTTTCGCGCGTCGTCTGCACAAGGCA
AGGATGCGTGTGTATCATAGCTGCGCGATCGTTCGTGGAACAAGTACACA
TCGTGCATGCTTCCGAGAGAGGGACAAGGTACACGCCATCCAAAAGCGTG
CGACAGGCAGAGGGGACGGAGAAGTCGTCGGAATGAAGCGAAACACTCGA
GGGTAGAACGTTGGTTGAACCGAGGCGTTGGTTGTTCCTGTTCAACGATA
GAAAATACCGGCGGAATACGTCCAAGCAACCCGTCACCGGTGACTACACA
CACGTCGGACGTCTAGATACTGCTGTTAACCACGGAATTATGTACGTCAC
TTCAGATGGAATTTTCAGTCCGAAGGGTAACAAGAAGAAGAAGCAACAAC
AACAGACGCTACCATTACAAGCGCTCGTCAGCGGATTTCGACGGAACTCG
ACGTTAAGCAGCTGCTGCTTCTCGATTCCCCCCCCCCCCCCCTCCTGCGG
GTACTTCCGTCGAGGATCTGGTTTTGGCAAATAAATGTTTGGGGGTACCA
TGTGATATGCGTCTGAGGAATTTCGGTGGGAACCCGATGCACGGCAAAAA
TGAAAAATTATGTAATTTTTTTATGAAACCGATGGAAGGGCCCAGGGCAA
CTTTTCAACTTTTCGCCCACACAGCTTCTACGATCGAATATGAACTAGAA
AAAAAAGACCCGCAAGAATTATTTCCGGCGACTGATGTGATAAATCTGTT
TCATTGGTTCTATACCTTGAGTCCTCGTGCGGCGATTTTTGGTTGAGCTG
CGTTTTGCTGCAGAGAAAATCTTATTCCTTATCCTGCTCACTTTTTATTC
CAAGGGTTGTTCGATTGTTCGAGGGTTGGGACCCTTGCTTTGAGCCAGCA
CACCGTCGTAAGACGCAGGTAGTCGTGGTCGAACAGCCCAGCCGACGCTG
CTGCTGCTACTGCTGCTGCTGCTACTTAAATTACGGGTCCGACCCCCCCT
ACACACACACTACAGCAGTGTATCCGTCTCCATGTAGTAGGAGGTCCGCC
AACTTTCAAGCTGGAACTCTTCCGAAGTCATTCATTCGTCGAAGGAAGCT
GGACGATCATGCCAGAGAGCGGTCTGCTGTCACTGCTGTGCAGCTGCTGT
GGTACAGGCAGCCGGGCGAACATACGATAGGTCATCTTGCTTCTTGTTGG
CAAGAGTCGCGTCGCGTTGAGTAAAGTATCCTGTCACATGTACGTTGGTC
AACATGCTTCCAAGCATTGTACACCCCGGGCGGTCCCTTGTGCCGCCGCT
TCCTTACCGCAGATCTTCTCCAAGTACCCGCTGCTGTTCCAATGTTTTAG
GAGGCGTGCAGCAGCAGTGCGTCATTGAACAAGCCATTTCTCGGTGGTGT
GCACGGAAGCATGCGCTGAAGGTTGAAAAATAGCTGCGCGGCGTTTACGG
TTACGAATGGTTTCCATGCCCGTACAAGTTTAGACGGATGTATCCTCTTA
AGTCGTAATCCGGCCGTGCACAAATCCACGTGAGAGCCGACAATGTACAG
CACAACAGCAGCGGTGGCGACGAAAGTAACCATCTAGTTTTGCATTTTTC
CTCAGTTTCTCCAGCATGGTAAAATTGCACGGCGAGTGATGGGGGGAACG
CCGTGGTCGGCGCACTCGCGAGTAGCGTCCATTTCACAGCGCCCGATGTG
CCTGGAGTACAAGCACTCCACATGCATTCGCGGGGTCCGCCTTTCGATCG
CAGCATGTAGCGTGGTATGCCGCTCTCGCTTGCGAGCCGTGCGTACGTAC
GTATGTATGATATGCATCATGTGCTCAAATCCGCTCTCCACCCTTCGGAG
TCTTCAACTCCATCCGGCTACAACGCTATTCCCATCCCGGACCCCCCTCC
TTCCTGCCTCATCCTTCTGATCGGTTCGATCACGAGGAGCCGGCGGGGCC
GACGACGGCTCCAGTGCCACGGCGCCCATTATCTCGCCTGCGCCCTCGCT
CTGGCTCGCTCTCTCTGGCTTTCTCAATCTGCGCGTCGAACACACCACAC
GGCAAGATGCCCGCCAGATATCTCCCCAAAGAGACGCCAACCACTAACCT
AACCACGAACGACCAAACCGTTCCTCGTTGTTCGCCCGCTTTTGCCTGTG
CCTCTCAGGCGCCCTGGACGGACGACCTGTTGGATCCGAACCCGTCGCTG
TCTCCTCTCTCCCCTTCGACGGGGGTGTGCGACCTCTCTCCGGACTTCCA
TCTTAGCGCGCCCTGGTCTCCGCTTGGTGGCAGGCGCAACAGCTGGGGCC
GGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1332:16534..20986+

>mRNA_H-canaliculatus_F_contig1332.2715.1 ID=mRNA_H-canaliculatus_F_contig1332.2715.1|Name=mRNA_H-canaliculatus_F_contig1332.2715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:16534..20986+ (Hapterophycus canaliculatus Oshoro5f female)
TGCACACTTGCCCTGCAATCTGATCTCCCTGTTGTTGCATTCCGCGCTTT
GACCACGAGGAACTGGCAAGCAAGGTGCTCCTCTGCCCAAGATTACGCGT
TTTTAGTAGCCGAGCAGCAGCGTGCAGGAGAAGAAAGAAGCCTCAGCGAG
ACAAGCAAAGCCCCAACGGAGGAGACGAGCCCCACAGGGAAACGATTACC
GAAGACCCTGAAGATAGAGAAACCCCATCATCCACACAGCTTTCTTCCCC
TCTCAGCCCCCAACGCCGCACCGAACGTTTGTTCTGAGCACCAAGTTCAC
ATCATCAGTCTCCCGCTACACCCAGCACACCCTCATGTGCACACTTGCCC
TGCAATCTGATCTCCCTGTTGTTGCATTCCGCGCTTTGACCACGAGGAAC
TGGCAAGCAAGGTGCTCCTCTGCCCAAGATTACGCGTTTTTAGTAGCCGA
GCAGCAGCGTGCAGGAGAAGAAAGAAGCCTCAGCGAGACAAGCAAAGCCC
CAACGGAGGAGACGAGCCCCACAGGGAAACGATTACCGAAGACCCTGAAG
ATAGAGAAACCCCATCATCCACACAGCTTTCTTCCCCTCTCAGCCCCCAA
CGCCGCACCGAACGTTTGTTCTGAGCACCAAGTTCACATCATCAGTCTCC
CGCTACACCCAGCACACCCTCATGCCTGCGGCGACCATGTACGCGGTGCT
CACGGCCGTGGCCATGATCGGCTGGAACGTCGTGGTGACGGAGCCTGCGG
CGACCATGTACGCGGTGCTCACGGCCGTGGCCATGATCGGCTGGAACGTC
GTGGTGACGGAGGGACCGAAAGAGTGCCCCGGCCGCCCGTACTCCCGGCG
CCGGAGCAGCAGGCGGCGATTCCGCCGCTACGGCGGGCGACGCCGGCAGC
GCCACGGGAAGCCGTCCCGGGGCGAACAGATTTCGACGCAATCGACGTCA
TCGTCGTCATCGACAGCGACGACCACGACGGAGAGCTTCAGCCCCCCTCG
GCACCTGTCTGCGCGGCGGCACGGAGAAGGGCGAAGACGATCTGGGAGGA
GCGAGAGGGAAGGAGCAGCAGCGCGAGGGGAAGGGCCTTCCTGCTGCGGG
GCCGCCCCCGACGCGGCGGCGCATCAGCGGCCTTGCGGGACGCCTGTGAC
GGCGCCGGGCTCCGCCGACGGCTCCCCGGTTTCTACTGAGGACCGAAAGA
GTGCCCCGGCCGCCCGTACTCCCGGCGCCGGAGCAGCAGGCGGCGATTCC
GCCGCTACGGCGGGCGACGCCGGCAGCGCCACGGGAAGCCGTCCCGGGGC
GAACAGATTTCGACGCAATCGACGTCATCGTCGTCATCGACAGCGACGAC
CACGACGGAGAGCTTCAGCCCCCCTCGGCACCTGTCTGCGCGGCGGCACG
GAGAAGGGCGAAGACGATCTGGGAGGAGCGAGAGGGAAGGAGCAGCAGCG
CGAGGGGAAGGGCCTTCCTGCTGCGGGGCCGCCCCCGACGCGGCGGCGCA
TCAGCGGCCTTGCGGGACGCCTGTGACGGCGCCGGGCTCCGCCGACGGCT
CCCCGGTTTCTACTGA
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