mRNA_H-canaliculatus_F_contig1326.2671.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1326.2671.1
Unique NamemRNA_H-canaliculatus_F_contig1326.2671.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1326.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1326contigH-canaliculatus_F_contig1326:24876..25528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000620.1
Exons1
Model size655
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.1576886-CDS-H-canaliculatus_F_contig1326:24875..255261622929064.1576886-CDS-H-canaliculatus_F_contig1326:24875..25526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 24876..25526 +
1696845665.9842346-CDS-H-canaliculatus_F_contig1326:24875..255261696845665.9842346-CDS-H-canaliculatus_F_contig1326:24875..25526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 24876..25526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1326.2671.1prot_H-canaliculatus_F_contig1326.2671.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1326 24876..25526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1326.2671.1

>prot_H-canaliculatus_F_contig1326.2671.1 ID=prot_H-canaliculatus_F_contig1326.2671.1|Name=mRNA_H-canaliculatus_F_contig1326.2671.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
GVSAEHNGGSEDGDIQAIKMGISGDISSAFRDITATQNDKIFQAEGLLKE
ARRKIDILEKIIEEKDGKIEQIAAAAGSDGGDIDDAEQAAAIAAALKGDV
IRIKPSSGVAAGEEESEAVELIALKKSTLISHLMFVLDSQLRRKGVKKEG
ISTAPTPAGSCSDASRAVQINEGRMEVTLDEVASGSAQHHACASAEIAAR
PRTVAARPDITLADTRG
back to top

mRNA from alignment at H-canaliculatus_F_contig1326:24876..25528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1326.2671.1 ID=mRNA_H-canaliculatus_F_contig1326.2671.1|Name=mRNA_H-canaliculatus_F_contig1326.2671.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=653bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:24876..25528+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGTATCAGCCGAGCACAACGGCGGATCGGAGGACGGAGACATCCAAGC
GATCAAGATGGGAATATCGGGAGACATTTCGAGCGCGTTCAGGGACATAA
CGGCGACGCAGAACGACAAGATTTTTCAAGCTGAAGGGCTGCTCAAAGAG
GCTCGCCGCAAGATAGATATCCTGGAAAAAATAATCGAGGAAAAAGATGG
GAAGATCGAGCAGATCGCGGCGGCCGCGGGCAGCGACGGTGGTGACATAG
ACGACGCAGAGCAAGCCGCTGCGATTGCTGCCGCGCTGAAGGGTGACGTG
ATCCGAATCAAACCAAGCAGCGGGGTGGCGGCAGGCGAAGAAGAAAGTGA
AGCAGTTGAGCTCATCGCCCTCAAGAAGTCCACCCTGATTTCCCACCTAA
TGTTTGTTCTCGACAGCCAGCTGCGGAGGAAAGGTGTAAAAAAAGAAGGT
ATCTCCACCGCCCCCACCCCCGCGGGATCGTGCTCGGATGCGAGTCGAGC
GGTTCAAATCAACGAAGGACGGATGGAGGTCACCCTGGATGAAGTAGCTA
GCGGCAGCGCTCAGCATCACGCTTGCGCTTCCGCTGAAATTGCCGCTCGC
CCTAGAACCGTTGCCGCCCGACCTGACATCACCCTCGCCGATACTCGTGG
TGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1326:24876..25528+

>mRNA_H-canaliculatus_F_contig1326.2671.1 ID=mRNA_H-canaliculatus_F_contig1326.2671.1|Name=mRNA_H-canaliculatus_F_contig1326.2671.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:24876..25528+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGTATCAGCCGAGCACAACGGCGGATCGGAGGACGGAGACATCCAAGC
GATCAAGATGGGAATATCGGGAGACATTTCGAGCGCGTTCAGGGACATAA
CGGCGACGCAGAACGACAAGATTTTTCAAGCTGAAGGGCTGCTCAAAGAG
GCTCGCCGCAAGATAGATATCCTGGAAAAAATAATCGAGGAAAAAGATGG
GAAGATCGAGCAGATCGCGGCGGCCGCGGGCAGCGACGGTGGTGACATAG
ACGACGCAGAGCAAGCCGCTGCGATTGCTGCCGCGCTGAAGGGTGACGTG
ATCCGAATCAAACCAAGCAGCGGGGTGGCGGCAGGCGAAGAAGAAAGTGA
AGCAGTTGAGCTCATCGCCCTCAAGAAGTCCACCCTGATTTCCCACCTAA
TGTTTGTTCTCGACAGCCAGCTGCGGAGGAAAGGTGTAAAAAAAGAAGGT
ATCTCCACCGCCCCCACCCCCGCGGGATCGTGCTCGGATGCGAGTCGAGC
GGTTCAAATCAACGAAGGACGGATGGAGGTCACCCTGGATGAAGTAGCTA
GCGGCAGCGCTCAGCATCACGCTTGCGCTTCCGCTGAAATTGCCGCTCGC
CCTAGAACCGTTGCCGCCCGACCTGACATCACCCTCGCCGATACTCGTGG
TGGCGTATCAGCCGAGCACAACGGCGGATCGGAGGACGGAGACATCCAAG
CGATCAAGATGGGAATATCGGGAGACATTTCGAGCGCGTTCAGGGACATA
ACGGCGACGCAGAACGACAAGATTTTTCAAGCTGAAGGGCTGCTCAAAGA
GGCTCGCCGCAAGATAGATATCCTGGAAAAAATAATCGAGGAAAAAGATG
GGAAGATCGAGCAGATCGCGGCGGCCGCGGGCAGCGACGGTGGTGACATA
GACGACGCAGAGCAAGCCGCTGCGATTGCTGCCGCGCTGAAGGGTGACGT
GATCCGAATCAAACCAAGCAGCGGGGTGGCGGCAGGCGAAGAAGAAAGTG
AAGCAGTTGAGCTCATCGCCCTCAAGAAGTCCACCCTGATTTCCCACCTA
ATGTTTGTTCTCGACAGCCAGCTGCGGAGGAAAGGTGTAAAAAAAGAAGG
TATCTCCACCGCCCCCACCCCCGCGGGATCGTGCTCGGATGCGAGTCGAG
CGGTTCAAATCAACGAAGGACGGATGGAGGTCACCCTGGATGAAGTAGCT
AGCGGCAGCGCTCAGCATCACGCTTGCGCTTCCGCTGAAATTGCCGCTCG
CCCTAGAACCGTTGCCGCCCGACCTGACATCACCCTCGCCGATACTCGTG
GT
back to top