mRNA_H-canaliculatus_F_contig13195.2622.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13195.2622.1
Unique NamemRNA_H-canaliculatus_F_contig13195.2622.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13195.2622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13195contigH-canaliculatus_F_contig13195:2764..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size407
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.2063665-UTR-H-canaliculatus_F_contig13195:2763..27941622929057.2063665-UTR-H-canaliculatus_F_contig13195:2763..2794Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13195 2764..2794 +
1696845663.1701024-UTR-H-canaliculatus_F_contig13195:2763..27941696845663.1701024-UTR-H-canaliculatus_F_contig13195:2763..2794Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13195 2764..2794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.2209861-CDS-H-canaliculatus_F_contig13195:2794..31691622929057.2209861-CDS-H-canaliculatus_F_contig13195:2794..3169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13195 2795..3169 +
1696845663.179707-CDS-H-canaliculatus_F_contig13195:2794..31691696845663.179707-CDS-H-canaliculatus_F_contig13195:2794..3169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13195 2795..3169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13195.2622.1prot_H-canaliculatus_F_contig13195.2622.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13195 2795..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13195.2622.1

>prot_H-canaliculatus_F_contig13195.2622.1 ID=prot_H-canaliculatus_F_contig13195.2622.1|Name=mRNA_H-canaliculatus_F_contig13195.2622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MSLLVVMVVLVLVHLLLGLVCLGQKEIRVVDAHTLSVPVGLMVEGCAGLA
LISGSTTPPPLHHFPPLFACARQNQAEEANRETRRGTRFVLFLVAVEQHG
DAGSRRRQANTNSSVSSQRHASIGL
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mRNA from alignment at H-canaliculatus_F_contig13195:2764..3169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13195.2622.1 ID=mRNA_H-canaliculatus_F_contig13195.2622.1|Name=mRNA_H-canaliculatus_F_contig13195.2622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13195:2764..3169+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGGACTACCGAGTGTTCGGGTGGGTCTGGATGTCGTTGTTGGTGGTGA
TGGTGGTGCTGGTGCTGGTGCACTTGTTGCTAGGTTTGGTCTGTTTGGGG
CAAAAGGAGATCCGCGTGGTGGATGCACATACCCTTTCCGTTCCTGTGGG
GTTGATGGTAGAGGGGTGTGCAGGACTTGCACTCATCTCGGGCAGTACGA
CTCCGCCACCGCTCCATCATTTCCCTCCTCTGTTTGCGTGCGCCAGGCAG
AACCAAGCTGAGGAAGCCAACAGGGAAACACGGCGGGGGACTCGGTTTGT
GCTTTTTTTGGTTGCTGTGGAACAGCACGGTGATGCCGGTTCACGCAGAC
GACAGGCAAACACTAACAGTTCCGTCAGCAGCCAGCGACACGCTTCCATT
GGTCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13195:2764..3169+

>mRNA_H-canaliculatus_F_contig13195.2622.1 ID=mRNA_H-canaliculatus_F_contig13195.2622.1|Name=mRNA_H-canaliculatus_F_contig13195.2622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13195:2764..3169+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGTTGTTGGTGGTGATGGTGGTGCTGGTGCTGGTGCACTTGTTGCT
AGGTTTGGTCTGTTTGGGGCAAAAGGAGATCCGCGTGGTGGATGCACATA
CCCTTTCCGTTCCTGTGGGGTTGATGGTAGAGGGGTGTGCAGGACTTGCA
CTCATCTCGGGCAGTACGACTCCGCCACCGCTCCATCATTTCCCTCCTCT
GTTTGCGTGCGCCAGGCAGAACCAAGCTGAGGAAGCCAACAGGGAAACAC
GGCGGGGGACTCGGTTTGTGCTTTTTTTGGTTGCTGTGGAACAGCACGGT
GATGCCGGTTCACGCAGACGACAGGCAAACACTAACAGTTCCGTCAGCAG
CCAGCGACACGCTTCCATTGGTCTGATGTCGTTGTTGGTGGTGATGGTGG
TGCTGGTGCTGGTGCACTTGTTGCTAGGTTTGGTCTGTTTGGGGCAAAAG
GAGATCCGCGTGGTGGATGCACATACCCTTTCCGTTCCTGTGGGGTTGAT
GGTAGAGGGGTGTGCAGGACTTGCACTCATCTCGGGCAGTACGACTCCGC
CACCGCTCCATCATTTCCCTCCTCTGTTTGCGTGCGCCAGGCAGAACCAA
GCTGAGGAAGCCAACAGGGAAACACGGCGGGGGACTCGGTTTGTGCTTTT
TTTGGTTGCTGTGGAACAGCACGGTGATGCCGGTTCACGCAGACGACAGG
CAAACACTAACAGTTCCGTCAGCAGCCAGCGACACGCTTCCATTGGTCTG
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