mRNA_H-canaliculatus_F_contig1316.2602.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1316.2602.1
Unique NamemRNA_H-canaliculatus_F_contig1316.2602.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.440e-108
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIGE 504
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEAR YAEDNGLIHMETSAKSAQNVK+IFVEI +
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQ 167
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 288 bits (736), Expect = 3.860e-97
Identity = 141/166 (84.94%), Postives = 159/166 (95.78%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            M SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TNK  SFNGAKSWVKELQRRGDPNVIIALAGNKADL+++R+V+SEEA+QY+E+NG++HMETSAK+A +VK++F EI
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNK-ESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRRVESEEAKQYSEENGILHMETSAKNATHVKDLFQEI 165
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A835Z7I1_9STRA (Rab5, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA)

HSP 1 Score: 286 bits (733), Expect = 1.070e-96
Identity = 146/162 (90.12%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:   13 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            RVCHFKLVLLGDTAVGKSCLVVRFVR+EFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV  EEA  YAE+NG+IHMETSAKSA NVK+IFVEI
Sbjct:    3 RVCHFKLVLLGDTAVGKSCLVVRFVRNEFFEFQEPTIGAAFLTQTVGLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-DSFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEI 163
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A7S2RYM3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA)

HSP 1 Score: 285 bits (729), Expect = 4.660e-96
Identity = 139/166 (83.73%), Postives = 156/166 (93.98%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            M + RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TNK  SFNGA+SWVKELQ+RGDPNV+IALAGNK+DLEH+R+V++EEA  YA +NG++HMETSAKSA NVK++FVEI
Sbjct:    1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNK-DSFNGARSWVKELQKRGDPNVVIALAGNKSDLEHKRKVETEEAEAYALENGILHMETSAKSATNVKSLFVEI 165
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 284 bits (727), Expect = 8.770e-96
Identity = 144/166 (86.75%), Postives = 151/166 (90.96%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            M SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L +ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNV+IALAGNK DLE RRQV  EEA  YA +NG+IHMETSAKSA NV+ IF++I
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQTVSLPEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-DSFNGAKSWVKELQRRGDPNVVIALAGNKCDLEPRRQVPFEEAAAYAAENGIIHMETSAKSAHNVQQIFLDI 165
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A1E7EUF1_9STRA (Ras-related small GTPase Rab5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUF1_9STRA)

HSP 1 Score: 278 bits (710), Expect = 3.410e-93
Identity = 137/166 (82.53%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            M+S RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN   SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA+ YAE+NG++H+ETSAK+A NVK +FVE+
Sbjct:    1 MSSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP-DSFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVEL 165
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A067CKZ4_SAPPC (Ras-like protein Rab-5C n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKZ4_SAPPC)

HSP 1 Score: 277 bits (708), Expect = 5.220e-93
Identity = 142/169 (84.02%), Postives = 152/169 (89.94%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIGE 504
            M S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V  EEARQYAE+N ++HMETSAK+A NVK++FV I +
Sbjct:    1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-DSFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQ 168
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: T0Q598_SAPDV (Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q598_SAPDV)

HSP 1 Score: 277 bits (708), Expect = 7.350e-93
Identity = 142/169 (84.02%), Postives = 152/169 (89.94%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEIGE 504
            M S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V  EEARQYAE+N ++HMETSAK+A NVK++FV I +
Sbjct:    1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-DSFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQ 168
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BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A5D6XMY9_9STRA (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=A0A5D6XMY9_9STRA)

HSP 1 Score: 277 bits (708), Expect = 7.870e-93
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 1 
Query:    1 MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            M  G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA QYAEDN ++HMETSAK+A NVK++FV I
Sbjct:    1 MAQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLDDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAI 166
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Match: A0A7S1ZIQ9_TRICV (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV)

HSP 1 Score: 278 bits (711), Expect = 9.980e-93
Identity = 138/164 (84.15%), Postives = 151/164 (92.07%), Query Frame = 1 
Query:    7 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKNIFVEI 498
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LD+ATVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN   SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YAE+NG++H+ETSAK+A NVK +FVEI
Sbjct:   45 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP-DSFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEI 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1316.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC7_ECTSI1.440e-10895.83Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
F0YJN1_AURAN3.860e-9784.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835Z7I1_9STRA1.070e-9690.12Rab5, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RYM3_9STRA4.660e-9683.73Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6V1MPB5_HETAK8.770e-9686.75Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
A0A1E7EUF1_9STRA3.410e-9382.53Ras-related small GTPase Rab5 n=1 Tax=Fragilariops... [more]
A0A067CKZ4_SAPPC5.220e-9384.02Ras-like protein Rab-5C n=1 Tax=Saprolegnia parasi... [more]
T0Q598_SAPDV7.350e-9384.02Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae Ta... [more]
A0A5D6XMY9_9STRA7.870e-9384.43Uncharacterized protein n=23 Tax=Oomycota TaxID=47... [more]
A0A7S1ZIQ9_TRICV9.980e-9384.15Hypothetical protein n=3 Tax=Mediophyceae TaxID=58... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1316contigH-canaliculatus_F_contig1316:23511..27637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.7
Seed ortholog evalue8.4e-85
Seed eggNOG ortholog2880.D7FJC7
Preferred nameVPS21
KEGG koko:K07889,ko:K17785
KEGG Pathwayko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152
GOsGO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab5, RAB family GTPase
Ec32 orthologEc-14_005840.1
Exons4
Model size519
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1316.2602.1prot_H-canaliculatus_F_contig1316.2602.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1316 23511..27637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.8242652-CDS-H-canaliculatus_F_contig1316:23510..236371622929053.8242652-CDS-H-canaliculatus_F_contig1316:23510..23637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 23511..23637 +
1696845661.960942-CDS-H-canaliculatus_F_contig1316:23510..236371696845661.960942-CDS-H-canaliculatus_F_contig1316:23510..23637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 23511..23637 +
1622929053.844334-CDS-H-canaliculatus_F_contig1316:25162..253201622929053.844334-CDS-H-canaliculatus_F_contig1316:25162..25320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 25163..25320 +
1696845661.9754324-CDS-H-canaliculatus_F_contig1316:25162..253201696845661.9754324-CDS-H-canaliculatus_F_contig1316:25162..25320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 25163..25320 +
1622929053.8680098-CDS-H-canaliculatus_F_contig1316:26039..261431622929053.8680098-CDS-H-canaliculatus_F_contig1316:26039..26143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 26040..26143 +
1696845661.9868777-CDS-H-canaliculatus_F_contig1316:26039..261431696845661.9868777-CDS-H-canaliculatus_F_contig1316:26039..26143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 26040..26143 +
1622929053.9039764-CDS-H-canaliculatus_F_contig1316:27507..276371622929053.9039764-CDS-H-canaliculatus_F_contig1316:27507..27637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 27508..27637 +
1696845661.99722-CDS-H-canaliculatus_F_contig1316:27507..276371696845661.99722-CDS-H-canaliculatus_F_contig1316:27507..27637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 27508..27637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1316.2602.1

>prot_H-canaliculatus_F_contig1316.2602.1 ID=prot_H-canaliculatus_F_contig1316.2602.1|Name=mRNA_H-canaliculatus_F_contig1316.2602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp
MTSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKV
QLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASSFNGA
KSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHME
TSAKSAQNVKNIFVEIGEGKES*
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mRNA from alignment at H-canaliculatus_F_contig1316:23511..27637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1316.2602.1 ID=mRNA_H-canaliculatus_F_contig1316.2602.1|Name=mRNA_H-canaliculatus_F_contig1316.2602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4127bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:23511..27637+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTCGGGGAGAGTATGCCACTTCAAGCTTGTCTTGCTCGGGGACAC
GGCCGTGGGAAAGTCTTGTCTCGTCGTGCGTTTCGTCCGGGACGAGTTCT
TCGAGTACCAGGAACCCACGATCGGAGGTGAGGGGGTCACGCGGAGGGAA
ATAGCCCCCGAGCCGATGTAGCCAAGAGGCCACGAGCTCCTCCAGCTGTG
TTCGCGGGCATGCGTGCGGGAGTTCTGTTTCGAGCGCCCTCGCGCGTGCG
TCATAACCGCGTTGCTTGTTTTGGCTCTCCGTGGGGAGGGGAACGTTCGT
CGGGCTTCCTCCCCGCGACACACACCGGTGTCGCACCTCCTGTTCGCGTT
TGTCCTTGAGCCGGACGCGTTGATAATTTTCTCGCCCTAACAAGGGTGTA
GGTCAGGCGTTATTTCAACACACGTTTGAGACGCCCGGAAGGCGTAGGTT
AAGCGTTGACGCCGGGGTGAGAGCTGGAGTATGAGAAGGAACTGGAGCCG
CAGCTCCTCCACCCCAGGCAGACTCTTGGAGGACCCTAGCAAAAACTAAG
CTTTCACTCGCGCGGTAGTCGGCCAGGCGCCGTGTGTCAGCGTGTCAGCT
CATAATCTCTGCCCCCGTGCACCGTGATAATGCAGCTCAGCCGCAAGTCA
GCGCCAGTGGAACCCAAAATTTCGCAAAAGTATGCTGCTGCAGGTTATCG
AAAAGGCTACGAAATGCAAGGCACCCGTAGGTGAACGCGATGAGGTCTCG
GTTTGGAAAGGGGGCAAGGAGTTGAAGTTTGTTCCGACACAGCTGAAAGA
GCGGGGCCTACTGGCGGAGAAAGTGGGCAGTGCGTACGGCAGTAGGGCAG
TCGCCATGTTTATGTCTTCCTTTTTCCAAGCGCACATTTTTCCAGATCGT
GTTCCGGTTCTCGGTCGTAGGTGAACATATCCTTCCTGTTCGAGAGCTTT
ACTAGCAAGAAACCACCCTCACCTCCAAATACATCGTATCTTCTGTCGTG
TCCCCTGTTTGACGTTGCTCGTTTTGCACAGAAACATGCTTGCCGATATT
CTCAGTGCCCACCTCGTCATGCTGTCCGCGGTAGCGATAAATAGTGCGTG
CTTCGACCTTGGTGCTCGGTTAAACCCTACCTGTCCCGGATGAGGCTGCG
TCTTGCCTCTGCTACCGTAGACATGCGTGCGCGTGTGCTCAGTTCCCGTA
CACGGTGCACGTTGTGGCGTCGACGCTCGCCGAGGAGGGCGCAAAACTGT
TGCTAGCCACGCGTATTGATCAATCGCCTCGTCACCGATGTTCAGTACCA
CAAGAAGGCAGCCAGCCCCACGCTGTGAAGATTCTGCCCACGCCCTTGCC
ACGCGGAGCCAACCAGTGGGACTGCGTTGCAGGGTATTATTCCTCTAGAT
CTCTGAATGCGGGGCAGGTTCCTTTCTACTCCTGTCCCAGTCTATATCTG
CTGCTTCGGGCGGGCGAGCGTGGATAAGTGAGGGTTGAATATTTCTTGTC
CTGTGGAGAGGACACACCGCGCCCCCGTCCGAACCATTGCTGCAGTCCAT
TCGCCGTCGACTACCGACTACCCACGCTGCCGCTGACACTCTGCTGTTGC
TTCTCTCTCTTCCGTCCTCGTCTGTTTGCCTCATTTTTCTGGCCTAACGC
AGCCGCATTCCTGACGCAAAAGGTACAGCTCGATGACGCGACCGTCAAAT
TCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAGCCTAGCGCCT
ATGTACTACAGGGGAGCTGCGGCGGCGATCGTCGTATACGACGTTACGAA
CAAGGCAAGCGTGCAGCAACAGACTGCTGTTCTGGGTGGTTAGCCGATGT
TTGACTCGTGTCGAGGTTTGGAACAAGCCCGAGAAGCTGTTGCCTTGCGC
TCGCCACATTCTTTCGCCACAGGTTTGTCGCCAAAAGTATGACGTGGCTG
GACTTGAGGGCTTACTCTGCTGCAGACCTGTTGATACTTTAGGGCCTGTA
AGGTTCGCCCGCCAGGCTTAGACTCTAACCGGGGTCTGACTCGTTGCAAC
TCACTTTTGTCGAGGTCTGCCTAGTCTTCGGTTTTTCGTCCCGTCTTTGC
TGCCCTTTCGTCAAAGACTTCAAAAGTCCAGCGACCTCGCTCTTTTGGTT
GGCCCGGGGTCTTGAGGTAGCGATCTCCGTCCCCCTCGATGCGGGAATTG
CACCGCCACCCATACCCTCAGCACAACAAAAGAAGCTCGAGATCGTTCCC
CTCGGTGCGTATGCATGGAAGACTGTGCTTGCTTTACCGTAGGCAGGACA
AACTAACATCTTCGGAAAACCAGACAAGAGCCAAGGTGTGTCTACGTGCA
CGTGCCGTCGCACGTCCCTGGGCCTGTTAGATCCTGTCCCTTATCGAATT
CTCCTCGGCCTTTGTCTTCTGTCTTTTTCTGTACAAGCTTTGTTCTCTGC
TCTTCTCGGCTCGGTTTCCCGGCTTGCTGGTGGTGAGCTCGTCGTTTTGG
CTCTCTCTTGCGTGCTGCCCGCTCAGGAGTCTTTCAACGGCGCGAAGTCG
TGGGTGAAGGAGCTGCAGCGTAGAGGAGACCCGAACGTGATTATCGCGCT
CGCAGGGAACAAGGCGGACCTCGAGCACCGCCGGTGAGTAGAAGGGCGTG
CAGTAGGGTCTTCCGTTCGCGAGGAAAGTAGTGTGCGGTGGGGTGTGCTG
TTTCTGCTACGTGCGGGCTATGAGAAGACCTACGACGGTCTCTCCCCCGT
GTCATTACTTACCATTCCAAGGATCGGCCTACCCTGTGTGCGTGTGTGCA
CGAGCGCACGCGTGTCGATTGCACTATGCGGCCAAACGAGGGAATTGTAG
GACGGACGGCGGTGCCGGGGGTCGCAGAGCGGTCACCGCGGATGGGGGCG
TGCGCAGTATCCGGGTTAGCCCATGCCAGGATCAAATCGTCCCACTCTTG
TCAAGGTCTTGCATGGAATGGGAAGGCCCGGTCGCTGAATGATTTCCGGG
ACGAGGGGTTACCACACGTGCCCCTCGGAGGCCCCTCGTTTGTGGCCAGC
GGCGCAACAGCTACCTTGATAGGTGGAAGGGGGTGAGTGACGGACACCCG
GCTTGCTAGGTTGATACTACTGTACTGCTGTAGCGCCTGAATGCAGAGAG
GAAAAGGGGGGATGGATGCGGGTGCCCCCTCGAGATGGAAACACCTGGCA
TCGTTGATGTTGAGGAATGGGAGCGGTGCTAGGTCGGTTGTGGCGGAGTT
TACGTGTCGGACGCCGGATGGAGTGGGTGCTTTTGTCTTCGCGGTGGTGG
GAGGGCGTCGCCCAGGCGGTAAGCGCTCCTGGGACAAGCGCGCGATTCCT
GTTGTTCGTCACAGGTAGCCTGGACCCGTCACTTCCCGTTGTCGGAGAAA
GGCGTCCTGATAAAACCGTATACGTCTGGGGTAAAGGGACGCGGGAGTTG
ATCGTGCTGGTGTTGTTGGTAGGTGGCACGGTGGACAAGAATTTGGACAT
GTCTCCGCAGTGTTATGAAGGACTCCGTACTACTGGTATGTTTTTATCGC
GTATTCGCGGTCAAAGTCAGTTCTTGGTGAAAGGGAGTGCGCAAGACATA
CGTGGCTTGTTATCTTGTTTGTGCTATTGTTCCTCTCCTCCCAGTCCAAT
GAACCACGAGAGCAGTGACAGTCGGGAGTCCGGCGAAGAAGAAAGACTGA
ACCCTTTGAAAAGAAAGAGTCAACAACACCAAGGGAATTCCCTCCGTTCT
CTTTTGCCAAGCATGAAAACATGGTTGTACAACGCCCACGCCCAGGCACT
TCCGTGAGTTTCTGGTGGGCAGAAGGTCCGCGAAAGTAATGGCGTTGTCG
GGCCGGCTATAGAACCCACCCCCTCCTTCCAGGCCTGACTTCCAAGGACA
CGAGTGGTATAATGATGAGGGCAAGAACGATGCACGAGTGACCCACCTCC
TTCGGACCCTTCCCTGCCCCCGCTTACTTGTGCGCGTCCTCTCTCAGGCA
AGTACAGTCGGAAGAAGCACGCCAGTACGCGGAGGATAACGGCCTGATTC
ACATGGAGACCTCGGCCAAGAGTGCGCAAAACGTCAAGAACATTTTCGTG
GAGATCGGTGAGGGGAAGGAATCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1316:23511..27637+

>mRNA_H-canaliculatus_F_contig1316.2602.1 ID=mRNA_H-canaliculatus_F_contig1316.2602.1|Name=mRNA_H-canaliculatus_F_contig1316.2602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:23511..27637+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTCGGGGAGAGTATGCCACTTCAAGCTTGTCTTGCTCGGGGACAC
GGCCGTGGGAAAGTCTTGTCTCGTCGTGCGTTTCGTCCGGGACGAGTTCT
TCGAGTACCAGGAACCCACGATCGGAGATGACTTCGGGGAGAGTATGCCA
CTTCAAGCTTGTCTTGCTCGGGGACACGGCCGTGGGAAAGTCTTGTCTCG
TCGTGCGTTTCGTCCGGGACGAGTTCTTCGAGTACCAGGAACCCACGATC
GGAGCCGCATTCCTGACGCAAAAGGTACAGCTCGATGACGCGACCGTCAA
ATTCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAGCCTAGCGC
CTATGTACTACAGGGGAGCTGCGGCGGCGATCGTCGTATACGACGTTACG
AACAAGGCAAGCCCGCATTCCTGACGCAAAAGGTACAGCTCGATGACGCG
ACCGTCAAATTCGAGATTTGGGATACGGCCGGGCAGGAGCGATACCGCAG
CCTAGCGCCTATGTACTACAGGGGAGCTGCGGCGGCGATCGTCGTATACG
ACGTTACGAACAAGGCAAGCTCTTTCAACGGCGCGAAGTCGTGGGTGAAG
GAGCTGCAGCGTAGAGGAGACCCGAACGTGATTATCGCGCTCGCAGGGAA
CAAGGCGGACCTCGAGCACCGCCGTCTTTCAACGGCGCGAAGTCGTGGGT
GAAGGAGCTGCAGCGTAGAGGAGACCCGAACGTGATTATCGCGCTCGCAG
GGAACAAGGCGGACCTCGAGCACCGCCGGCAAGTACAGTCGGAAGAAGCA
CGCCAGTACGCGGAGGATAACGGCCTGATTCACATGGAGACCTCGGCCAA
GAGTGCGCAAAACGTCAAGAACATTTTCGTGGAGATCGGTGAGGGGAAGG
AATCGTGAGCAAGTACAGTCGGAAGAAGCACGCCAGTACGCGGAGGATAA
CGGCCTGATTCACATGGAGACCTCGGCCAAGAGTGCGCAAAACGTCAAGA
ACATTTTCGTGGAGATCGGTGAGGGGAAGGAATCGTGA
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