mRNA_H-canaliculatus_F_contig131.2559.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig131.2559.1
Unique NamemRNA_H-canaliculatus_F_contig131.2559.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.430e-57
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV 261
            IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV
Sbjct:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV 94          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 4.470e-57
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV 261
            IFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV
Sbjct:    8 IFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV 94          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.130e-47
Identity = 70/85 (82.35%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            IFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 4.490e-32
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDMS+E  + A++ +++AF LTI  G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.220e-30
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDM+D M +  + T+++AFQL +  G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 3.590e-30
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDM+D M    L T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.870e-30
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    8 VFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 108 bits (270), Expect = 5.280e-29
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 246
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.960e-29
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDMS+E  + A + +++AF +TI+ G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.620e-28
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 255
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig131.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI2.430e-57100.00Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE4.470e-5798.85Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA5.130e-4782.35Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH4.490e-3262.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA1.220e-3058.82Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL3.590e-3060.00Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S4E7C9_9STRA7.870e-3060.00Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
H3HCG0_PHYRM5.280e-2962.20Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A7S3H299_9STRA9.960e-2958.82Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
A0A225VFG7_9STRA1.620e-2861.18Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig131contigH-canaliculatus_F_contig131:40379..41052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D7FQ30
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Exons2
Model size270
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig131.2559.1prot_H-canaliculatus_F_contig131.2559.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig131 40379..41037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.0778246-CDS-H-canaliculatus_F_contig131:40378..405581622929047.0778246-CDS-H-canaliculatus_F_contig131:40378..40558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig131 40379..40558 -
1696845659.324127-CDS-H-canaliculatus_F_contig131:40378..405581696845659.324127-CDS-H-canaliculatus_F_contig131:40378..40558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig131 40379..40558 -
1622929047.0997543-CDS-H-canaliculatus_F_contig131:40962..410371622929047.0997543-CDS-H-canaliculatus_F_contig131:40962..41037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig131 40963..41037 -
1696845659.3424315-CDS-H-canaliculatus_F_contig131:40962..410371696845659.3424315-CDS-H-canaliculatus_F_contig131:40962..41037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig131 40963..41037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.1160119-UTR-H-canaliculatus_F_contig131:41037..410521622929047.1160119-UTR-H-canaliculatus_F_contig131:41037..41052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig131 41038..41052 -
1696845659.3554091-UTR-H-canaliculatus_F_contig131:41037..410521696845659.3554091-UTR-H-canaliculatus_F_contig131:41037..41052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig131 41038..41052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig131.2559.1

>prot_H-canaliculatus_F_contig131.2559.1 ID=prot_H-canaliculatus_F_contig131.2559.1|Name=mRNA_H-canaliculatus_F_contig131.2559.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=85bp
MSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVV
GRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVSP*
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mRNA from alignment at H-canaliculatus_F_contig131:40379..41052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig131.2559.1 ID=mRNA_H-canaliculatus_F_contig131.2559.1|Name=mRNA_H-canaliculatus_F_contig131.2559.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:40379..41052- (Hapterophycus canaliculatus Oshoro5f female)
ATCTTCGCGGAAGACATGTCGGACGAAATGTGCCAATTCGCGCTAGAGAC TAGCCAAGAGGCCTTCCAACTGACCATCACCAAGGGCCAGGTGGGATAGG AGGGTAACACGGTAACTGTTTCTTTTCCGGAATAAATCTCGCAGACTAGG CTGTGGGCACCGGTCATTTACCGCAACACCGGCAATTAACTTAGCTGCCC TTGGTCGCCAGCAAAGCTGTCAAAATGATTTAGGCTCTGTTTGTCTCTTT AACACTCAAGGAGGCGACAGCGACGTTTCTCCAGCTGTTGAAACTTGTTC GCGCACAAGTTCCACATGGAAATTTTACTACCTGGACCAATTTGTGATGC CCACAGTGACGGGAACCTCACGACTTATGTTCTACATGCACGGTAGAAAC GTTCGTCGCAGCGACAAATTCGAGAAATATCTGTCCCACTTTGGCTTACT TTGCCCCCATGCTGTGGAATCACGTCGCCGGCGATGCAATAAAGGTGTTC ACAACGATAGCTTCGTGCATCCGCAAAGCGTTCGAGAAATCATACGGGCG GGGTTGGAACGTTGTTGTGGGGAGAAGCTTCGGAGCGTACGTGACCCATG AGATCAAGACTTACATGTATTTTACCGTTGTCCCTGGGGTCTACGTTCTG CTTTGGAGGTGGGTCTCCCCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig131:40379..41052-

>mRNA_H-canaliculatus_F_contig131.2559.1 ID=mRNA_H-canaliculatus_F_contig131.2559.1|Name=mRNA_H-canaliculatus_F_contig131.2559.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:40379..41052- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGACGAAATGTGCCAATTCGCGCTAGAGACTAGCCAAGAGGCCTT
CCAACTGACCATCACCAAGGGCCAGATGTCGGACGAAATGTGCCAATTCG
CGCTAGAGACTAGCCAAGAGGCCTTCCAACTGACCATCACCAAGGGCCAG
GTGTTCACAACGATAGCTTCGTGCATCCGCAAAGCGTTCGAGAAATCATA
CGGGCGGGGTTGGAACGTTGTTGTGGGGAGAAGCTTCGGAGCGTACGTGA
CCCATGAGATCAAGACTTACATGTATTTTACCGTTGTCCCTGGGGTCTAC
GTTCTGCTTTGGAGGTGGGTCTCCCCATGAGTGTTCACAACGATAGCTTC
GTGCATCCGCAAAGCGTTCGAGAAATCATACGGGCGGGGTTGGAACGTTG
TTGTGGGGAGAAGCTTCGGAGCGTACGTGACCCATGAGATCAAGACTTAC
ATGTATTTTACCGTTGTCCCTGGGGTCTACGTTCTGCTTTGGAGGTGGGT
CTCCCCATGA
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