mRNA_H-canaliculatus_F_contig130.2492.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: D7G3T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T3_ECTSI) HSP 1 Score: 248 bits (634), Expect = 4.860e-70 Identity = 196/457 (42.89%), Postives = 240/457 (52.52%), Query Frame = 1
Query: 337 LEVGRVHVGLIAGRRIARRGRGGMTELFGLVSAPPASPYCKITLGDSELSSGVGVRTTAGYAWNREQMAFPVKVQEMAVLRDPGKATHTEYQESEGGTTRGEKGEDGPSPSS-----PTRGG-GKAGGVACGSSISRAXXXXXXXXXAHEVSRRLTLKVQVFHR---------VDDGRTRPEAGXXXXXXXVVVSKGPGVQIGTAADSPATNNAASRSGGTVGTGGATDGSDGDSXXXXXXXXXXNEDLLIGECSLDLVELVCGRAPHVEEWLPLDSEGDLRLSLDYDSVGGVVPVPGDPVVLLCLSNRLDFFPLPVWDGDDAEDLPRPGAPSWLWPGGGRAWLRRSSGGGGEGFRVEEAGDDFFLISYPTPEGWRCAVEVHRFLVHPDHTAPRRWTLSGVRDHAAATPAAAAVREAVLSASQEESILEGGKGLAIAAFEGVMWTAARWRAGGLGRA 1662
L VG +HVGLIA R + R +GG++++ GL +P ASPYC+ TLG+ E +SGVGVRTT G++WNREQ+ FPVKV V+ G++ HT S+G +T G GP ++ P GG G +G VAC SS+SRA AH V +L+L+ QVFHR V G T X V K + +G + AT+NA + G T G++XXXXXXXXXX D L+GECSL+LVE+V GRAPHVEEW+PLDSEG+LRLSLDYDSV + PVPGD V +PD TAP+RWTLSGVRDHAAATPAAAA+R AVL ASQEES EGGK LA+ EGV WTA RW +GGL RA
Sbjct: 2 LGVGSLHVGLIAARDVKRVKQGGVSDMLGL--SPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIYFPVKVPISCVVGGSGQSYHTAGSGSDGSSTNTRGGTKGPRKAATPVGQPKSGGEGGSGSVACRSSLSRAVANADAAA-AHCVWNQLSLRAQVFHREGGDGYGAGVGSGTTAXXXXXVKGPGGVAAKKATTMAVGITTSTTATSNAKALKDTPEDPAGTTL-MGGNTXXXXXXXXXXXNDRLLGECSLNLVEVVSGRAPHVEEWVPLDSEGELRLSLDYDSVREL-PVPGDSV-------------------------------------------------------------------------------------YPDPTAPQRWTLSGVRDHAAATPAAAAIRGAVLRASQEESAWEGGKTLALNVLEGVSWTAKRWWSGGLDRA 368
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A6H5KRG9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG9_9PHAE) HSP 1 Score: 134 bits (337), Expect = 4.050e-32 Identity = 82/168 (48.81%), Postives = 108/168 (64.29%), Query Frame = 1
Query: 325 VEETLEVGRVHVGLIAGRRIARRGRGGMTELFGLVSAPPASPYCKITLGDSELSSGVGVRTTAGYAWNREQMAFPVKVQEMAVLRDPGKATHTEYQESEGGTTRGEKGEDGP----SPSSPTRGGGK--AGGVACGSSISRAXXXXXXXXXAHEVSRRLTLKVQVFHR 810
VE+ LEVG +HVGLIA R + R +GG++++ GL +P ASPYC+ TLG+ E +SGVGVRTT G++WNREQ+ FPVKV V+ G++ HT S+G +T KG GP +P + GGK +G VACGSS+SRA AH V L+L+ QVFHR
Sbjct: 6 VEDMLEVGSLHVGLIAARDVKRVKQGGVSDMLGL--SPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIFFPVKVPISCVIGGSGQSYHTAGSGSDGSSTNRRKGTKGPRKAATPGGQPKSGGKGGSGSVACGSSLSRAVAADAAA--AHGVWNHLSLRAQVFHR 169
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A6H5KDQ7_9PHAE (U-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ7_9PHAE) HSP 1 Score: 128 bits (321), Expect = 4.200e-31 Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 2074 FTPDQEQRE----HLCPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSLVSSSSSP 2286
F P Q+Q + HLCPITRCPMEDPAVA DG TYER AIERWLSEHDTSPVTGK LETKVVFKNWSLVSSS SP
Sbjct: 30 FAPQQQQHQXQHQHLCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKVVFKNWSLVSSSPSP 104
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: D7G3T4_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T4_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 3.200e-21 Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 1
Query: 2128 MEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSLVSSSSSP 2286
MEDPAVA DG TYER AIE WLSEHDTSPVTGK LETKVVFKNWSLVSSS SP
Sbjct: 1 MEDPAVAADGYTYERTAIECWLSEHDTSPVTGKALETKVVFKNWSLVSSSPSP 53
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7S1UIP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIP8_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 7.070e-17 Identity = 72/229 (31.44%), Postives = 104/229 (45.41%), Query Frame = 1
Query: 1030 EDLLIGECSLDLVELVCGRAPHVEEWLPLDSEGDLRLSLDYDSVGGVVPVP--GDPVVLLCLSNRLD--FFPLPVWDGDDAEDLPRPGAPSWLWPGGGRAWLRRSSGGGGEGFRVEEAGDDFFLISYPTPEGWRCAVEVHRFLVHPDHTAPRRW--TLSGVRDHAAATPAAAAVREAVLSASQEESILEGGKGLAIAAFEGVMWTAARWRAGGLGRARDDVCFALDLTD 1698
E +++G LD+V L+ GR H++EWL L G + +++D+D +P+P GD V + L RLD FP+P + LW V+E G D +S+ T EGW+C VEVHRFL+ P T R + G +P V +AVL+ ++ GG + GV+ A RWR GG ARDD+ + L D
Sbjct: 49 EAVVLGAVELDVVNLLTGRVNHMDEWLDLGDGGSIHVAVDFDMT---MPLPQVGDGV--MPLPYRLDARLFPVP--------------RSTTLW--------------------VDETGCDHVKVSWETTEGWKCVVEVHRFLLVPLPTEKGRIMANIEGAAQALYHSPIVNTVTDAVLAIPEDGVTRVGGM-----LWGGVVDYAGRWRQGGFAAARDDLAWGLGFAD 233
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7S1UFM5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFM5_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 8.320e-13 Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 2107 CPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSLVSSS 2277
CPIT PM +P VA DG TYER+A+ERWL +HDTSP+TG++L TK +F N +L +++
Sbjct: 37 CPITGAPMCEPVVAADGHTYERSAMERWLRDHDTSPLTGEVLPTKALFPNRTLAATN 93
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7R9UF69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF69_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.560e-13 Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 2107 CPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSL 2265
CPIT PM DP VA DG TYER AI RW SEHDTSP+TG++L TK +F N+++
Sbjct: 79 CPITGAPMCDPVVAADGHTYERTAILRWFSEHDTSPLTGEVLVTKALFPNFAI 131
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7J6LA49_PEROL (U-box domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LA49_PEROL) HSP 1 Score: 73.9 bits (180), Expect = 1.810e-11 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1
Query: 2104 LCPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVV 2247
+CPITR PM PAVACDG TYER AIERWL+ +D SP+TG + T++V
Sbjct: 102 MCPITRAPMRSPAVACDGHTYERGAIERWLAGNDKSPITGSRMMTRLV 149
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7S2FZS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZS1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.690e-11 Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 2104 LCPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSL 2265
+CPIT+ + DP VA DG+TYERAAIERWL+ SP TG+I+ T+V+F N++L
Sbjct: 8 VCPITQEAIVDPMVAADGVTYERAAIERWLATSRLSPATGQIMATRVLFPNYTL 61
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Match: A0A7S3WUR5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WUR5_EMIHU) HSP 1 Score: 69.3 bits (168), Expect = 2.440e-10 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 2080 PDQEQREHLCPITRCPMEDPAVACDGITYERAAIERWLSEHDTSPVTGKILETKVVFKNWSL 2265
P++ + +CPIT M DP VA DG +YER+AIERWLS TSP+T LE+K +F N SL
Sbjct: 50 PEEPPDDFICPITTEIMSDPVVAADGQSYERSAIERWLSTKSTSPLTSAELESKGLFPNHSL 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig130.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig130.2492.1 >prot_H-canaliculatus_F_contig130.2492.1 ID=prot_H-canaliculatus_F_contig130.2492.1|Name=mRNA_H-canaliculatus_F_contig130.2492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=662bp MTAVEETLEVGRVHVGLIAGRRIARRGRGGMTELFGLVSAPPASPYCKITback to top mRNA from alignment at H-canaliculatus_F_contig130:21711..33195- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig130.2492.1 ID=mRNA_H-canaliculatus_F_contig130.2492.1|Name=mRNA_H-canaliculatus_F_contig130.2492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=11485bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:21711..33195- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig130:21711..33195- >mRNA_H-canaliculatus_F_contig130.2492.1 ID=mRNA_H-canaliculatus_F_contig130.2492.1|Name=mRNA_H-canaliculatus_F_contig130.2492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig130:21711..33195- (Hapterophycus canaliculatus Oshoro5f female)back to top |