mRNA_H-canaliculatus_F_contig12922.2436.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12922.2436.1
Unique NamemRNA_H-canaliculatus_F_contig12922.2436.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12922.2436.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.000e-24
Identity = 119/227 (52.42%), Postives = 132/227 (58.15%), Query Frame = -1 
Query:  540 MRGPAPAQANVNAGGDPAVPFAAFRGGGREEQEREXXXXXXXXXXXXXXXXQRPARAFLGLEVGNALAACWGSQ-VYEEDENSRPVEFDLYAAER----ERAEVLKPSAVVLADLSRGTSASTVVGAGSSXXXXXXXXXXXXXXXXXXXXXXXXXEVLDERPSALCGSS----SAESSLFLAVVSPSRRVPPPLVSVASTLPLPPVSMASSV-VSGSSSNPWLSPTP 1190
            ++ PAP QANVNAGGDPAVPFA FRGGGR    RE  XXXXXXXXX            L L VG+ALAACWG Q   + DENSRP EFDL  +E     ER  V KP  V++A +SRGTSA+                      XXXXXXXXXX EV  +   +  GSS    S +SSL L  VSPSR VPPPLVSVAS   LPPVS ASS  + G    PW  P P
Sbjct:  847 LKVPAPTQANVNAGGDPAVPFATFRGGGRATPSREGQXXXXXXXXXMPS---------LRLGVGSALAACWGVQETNDNDENSRPTEFDLGNSEEVEVEERIVVRKPPPVLVA-MSRGTSATXXX-------------------XXXXXXXXXXDEVFGDDARSAAGSSGSGSSRDSSLLLTAVSPSR-VPPPLVSVASWGTLPPVSRASSCSLGGLVLQPWAIPHP 1043
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12922.2436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI3.000e-2452.42Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12922contigH-canaliculatus_F_contig12922:93..1546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1421
Cds size1389
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12922.2436.1prot_H-canaliculatus_F_contig12922.2436.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12922 125..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.2902966-UTR-H-canaliculatus_F_contig12922:92..1241622929023.2902966-UTR-H-canaliculatus_F_contig12922:92..124Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12922 93..124 +
1696845651.240662-UTR-H-canaliculatus_F_contig12922:92..1241696845651.240662-UTR-H-canaliculatus_F_contig12922:92..124Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12922 93..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.3047488-CDS-H-canaliculatus_F_contig12922:124..11941622929023.3047488-CDS-H-canaliculatus_F_contig12922:124..1194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12922 125..1194 +
1696845651.2514708-CDS-H-canaliculatus_F_contig12922:124..11941696845651.2514708-CDS-H-canaliculatus_F_contig12922:124..1194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12922 125..1194 +
1622929023.3169613-CDS-H-canaliculatus_F_contig12922:1227..15461622929023.3169613-CDS-H-canaliculatus_F_contig12922:1227..1546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12922 1228..1546 +
1696845651.2607281-CDS-H-canaliculatus_F_contig12922:1227..15461696845651.2607281-CDS-H-canaliculatus_F_contig12922:1227..1546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12922 1228..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12922.2436.1

>prot_H-canaliculatus_F_contig12922.2436.1 ID=prot_H-canaliculatus_F_contig12922.2436.1|Name=mRNA_H-canaliculatus_F_contig12922.2436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=463bp
MKSGQGCLTIESRISSADSVHPPVLWLRTRDLQELPSRRRLHPPARRVRQ
LHPPACRRRRRGRYHCCRLHVPGGGGGRRRRASRVPFPLVLEGGAPHAVR
RSLSSRRRRRQRLQPRHGIQDLVPRVGRLLFLLFLLLHLLPTLELALALL
VLPGLDLRRLRLLRLPLQTRGRRQPRVGGGAGDDGGGHRHRGERERRGHR
DERRRHAARGRHHGEEERRLGAGGTAQCGRPLVKHLFLVLVVVVVVVVVH
VGSAPTAFIPARRASTDHSACAGAPRQVGEHDGGRLQDLRPLPLGGVQVE
LHRPGIFVFLVHLRAPARRKSVAHLQPQERPCRALRLRLPLYLLLPFPLL
LLPLLLLPATTAERSEGHGRISPGVHVRLGRSRAPHFPPVAVTVGRFASR
AAARSPSVRPVSPCVIVRLRVRPGAWRRRRRPRPRQGAAPAAPAAVQANR
HRRPRGREMLGDR
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mRNA from alignment at H-canaliculatus_F_contig12922:93..1546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12922.2436.1 ID=mRNA_H-canaliculatus_F_contig12922.2436.1|Name=mRNA_H-canaliculatus_F_contig12922.2436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1454bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12922:93..1546+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCATGGCGCCCACACCACCGCAAGCCTGACATGAAAAGCGGCCAGGGG
TGCTTGACGATAGAGAGCCGAATTAGCTCCGCAGATTCAGTCCACCCCCC
CGTCCTTTGGCTCCGCACGCGCGACCTCCAGGAGCTCCCCTCGAGGAGGC
GTTTGCACCCACCGGCCCGAAGGGTACGCCAGCTCCATCCTCCCGCGTGT
CGGAGGAGGCGCAGGGGCCGGTACCACTGCTGCCGACTGCATGTTCCCGG
TGGCGGCGGCGGACGACGACGACGGGCCTCCCGCGTACCGTTCCCACTGG
TCCTGGAGGGAGGCGCCCCCCATGCCGTTCGACGGAGTCTGTCCTCGCGG
AGGCGGCGACGGCAGCGGCTGCAGCCAAGGCATGGAATCCAAGATCTCGT
CCCCCGGGTCGGGCGCTTGCTCTTCCTCCTCTTCCTCCTCCTCCATCTCT
TGCCTACGCTCGAGCTTGCCCTCGCGCTCTTGGTCCTCCCGGGCCTTGAC
CTCCGTCGTCTCCGTCTCCTCCGTCTCCCCTTGCAGACCCGGGGTCGGAG
ACAGCCAAGGGTTGGAGGAGGAGCCGGAGACGACGGAGGAGGCCATCGAC
ACCGGGGGGAGCGGGAGCGTCGAGGCCACCGAGACGAGCGGCGGCGGCAC
GCGGCGCGAGGGAGACACCACGGCGAGGAAGAGCGAAGACTCGGCGCTGG
AGGAACCGCACAGTGCGGACGGCCTCTCGTCAAGCACCTCTTCTTGGTCC
TCGTAGTCGTCGTCGTCGTGGTCGTCGTCCATGTCGGCTCCGCGCCGACC
GCCTTCATCCCCGCCCGACGAGCCAGCACCGACCACAGTGCTTGCGCTGG
TGCCCCTCGACAGGTCGGCGAGCACGACGGCGGACGGCTTCAGGACCTCC
GCCCTCTCCCGCTCGGCGGCGTACAGGTCGAACTCCACCGGCCTGGAATT
TTCGTCTTCCTCGTACACCTGAGAGCCCCAGCACGCCGCAAGAGCGTTGC
CCACCTCCAGCCCCAGGAACGCCCGTGCCGGGCGCTGCGCCTGCGCTTGC
CCCTTTACCTCCTCCTGCCCTTTCCCCTGCTCTTGCTCCCGCTCCTGCTC
CTGCTCCTGCTCCTTCCCTTGCTCCTGCACGGTAGCCCTGCCACCACCGC
GGAACGCAGCGAAGGGCACGGCCGGATCTCCCCCGGCGTTCACGTTCGCC
TGGGCCGGAGCCGGGCCCCTCATTTCCCGCCCGTCGCCGTTACTGTCGGC
CGATTCGCCTCCCGTGCCGCTGCTCGATCCCCCTCCGTCCGCCCCGTCTC
CCCGTGCGTCATCGTCCGCCTTCGTGTCCGCCCCGGGGCTTGGAGGCGCC
GCCGCCGCCCCCGCCCCCGACAGGGCGCCGCGCCAGCTGCTCCCGCTGCT
GTCCAGGCCAACCGTCACCGTCGTCCCCGTGGACGGGAAATGCTTGGTGA
CCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12922:93..1546+

>mRNA_H-canaliculatus_F_contig12922.2436.1 ID=mRNA_H-canaliculatus_F_contig12922.2436.1|Name=mRNA_H-canaliculatus_F_contig12922.2436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2778bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12922:93..1546+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAAGCGGCCAGGGGTGCTTGACGATAGAGAGCCGAATTAGCTCCGC
AGATTCAGTCCACCCCCCCGTCCTTTGGCTCCGCACGCGCGACCTCCAGG
AGCTCCCCTCGAGGAGGCGTTTGCACCCACCGGCCCGAAGGGTACGCCAG
CTCCATCCTCCCGCGTGTCGGAGGAGGCGCAGGGGCCGGTACCACTGCTG
CCGACTGCATGTTCCCGGTGGCGGCGGCGGACGACGACGACGGGCCTCCC
GCGTACCGTTCCCACTGGTCCTGGAGGGAGGCGCCCCCCATGCCGTTCGA
CGGAGTCTGTCCTCGCGGAGGCGGCGACGGCAGCGGCTGCAGCCAAGGCA
TGGAATCCAAGATCTCGTCCCCCGGGTCGGGCGCTTGCTCTTCCTCCTCT
TCCTCCTCCTCCATCTCTTGCCTACGCTCGAGCTTGCCCTCGCGCTCTTG
GTCCTCCCGGGCCTTGACCTCCGTCGTCTCCGTCTCCTCCGTCTCCCCTT
GCAGACCCGGGGTCGGAGACAGCCAAGGGTTGGAGGAGGAGCCGGAGACG
ACGGAGGAGGCCATCGACACCGGGGGGAGCGGGAGCGTCGAGGCCACCGA
GACGAGCGGCGGCGGCACGCGGCGCGAGGGAGACACCACGGCGAGGAAGA
GCGAAGACTCGGCGCTGGAGGAACCGCACAGTGCGGACGGCCTCTCGTCA
AGCACCTCTTCTTGGTCCTCGTAGTCGTCGTCGTCGTGGTCGTCGTCCAT
GTCGGCTCCGCGCCGACCGCCTTCATCCCCGCCCGACGAGCCAGCACCGA
CCACAGTGCTTGCGCTGGTGCCCCTCGACAGGTCGGCGAGCACGACGGCG
GACGGCTTCAGGACCTCCGCCCTCTCCCGCTCGGCGGCGTACAGGTCGAA
CTCCACCGGCCTGGAATTTTCGTCTTCCTCGTACACCTGAGAGCCCCAGC
ACGCCGCAAGAGCGTTGCCCACCTCCAGCCCCAGGAACGCCCGTGCCGGG
CGCTGCGCCTGCGCTTGCCCCTTTACCTCCTCCTGCCCTTTCCCCTGCTC
TTGCTCCCGCTCCTGCTCCTATGAAAAGCGGCCAGGGGTGCTTGACGATA
GAGAGCCGAATTAGCTCCGCAGATTCAGTCCACCCCCCCGTCCTTTGGCT
CCGCACGCGCGACCTCCAGGAGCTCCCCTCGAGGAGGCGTTTGCACCCAC
CGGCCCGAAGGGTACGCCAGCTCCATCCTCCCGCGTGTCGGAGGAGGCGC
AGGGGCCGGTACCACTGCTGCCGACTGCATGTTCCCGGTGGCGGCGGCGG
ACGACGACGACGGGCCTCCCGCGTACCGTTCCCACTGGTCCTGGAGGGAG
GCGCCCCCCATGCCGTTCGACGGAGTCTGTCCTCGCGGAGGCGGCGACGG
CAGCGGCTGCAGCCAAGGCATGGAATCCAAGATCTCGTCCCCCGGGTCGG
GCGCTTGCTCTTCCTCCTCTTCCTCCTCCTCCATCTCTTGCCTACGCTCG
AGCTTGCCCTCGCGCTCTTGGTCCTCCCGGGCCTTGACCTCCGTCGTCTC
CGTCTCCTCCGTCTCCCCTTGCAGACCCGGGGTCGGAGACAGCCAAGGGT
TGGAGGAGGAGCCGGAGACGACGGAGGAGGCCATCGACACCGGGGGGAGC
GGGAGCGTCGAGGCCACCGAGACGAGCGGCGGCGGCACGCGGCGCGAGGG
AGACACCACGGCGAGGAAGAGCGAAGACTCGGCGCTGGAGGAACCGCACA
GTGCGGACGGCCTCTCGTCAAGCACCTCTTCTTGGTCCTCGTAGTCGTCG
TCGTCGTGGTCGTCGTCCATGTCGGCTCCGCGCCGACCGCCTTCATCCCC
GCCCGACGAGCCAGCACCGACCACAGTGCTTGCGCTGGTGCCCCTCGACA
GGTCGGCGAGCACGACGGCGGACGGCTTCAGGACCTCCGCCCTCTCCCGC
TCGGCGGCGTACAGGTCGAACTCCACCGGCCTGGAATTTTCGTCTTCCTC
GTACACCTGAGAGCCCCAGCACGCCGCAAGAGCGTTGCCCACCTCCAGCC
CCAGGAACGCCCGTGCCGGGCGCTGCGCCTGCGCTTGCCCCTTTACCTCC
TCCTGCCCTTTCCCCTGCTCTTGCTCCCGCTCCTGCTCCTCCCTGCCACC
ACCGCGGAACGCAGCGAAGGGCACGGCCGGATCTCCCCCGGCGTTCACGT
TCGCCTGGGCCGGAGCCGGGCCCCTCATTTCCCGCCCGTCGCCGTTACTG
TCGGCCGATTCGCCTCCCGTGCCGCTGCTCGATCCCCCTCCGTCCGCCCC
GTCTCCCCGTGCGTCATCGTCCGCCTTCGTGTCCGCCCCGGGGCTTGGAG
GCGCCGCCGCCGCCCCCGCCCCCGACAGGGCGCCGCGCCAGCTGCTCCCG
CTGCTGTCCAGGCCAACCGTCACCGTCGTCCCCGTGGACGGGAAATGCTT
GGTGACCGCCCCTGCCACCACCGCGGAACGCAGCGAAGGGCACGGCCGGA
TCTCCCCCGGCGTTCACGTTCGCCTGGGCCGGAGCCGGGCCCCTCATTTC
CCGCCCGTCGCCGTTACTGTCGGCCGATTCGCCTCCCGTGCCGCTGCTCG
ATCCCCCTCCGTCCGCCCCGTCTCCCCGTGCGTCATCGTCCGCCTTCGTG
TCCGCCCCGGGGCTTGGAGGCGCCGCCGCCGCCCCCGCCCCCGACAGGGC
GCCGCGCCAGCTGCTCCCGCTGCTGTCCAGGCCAACCGTCACCGTCGTCC
CCGTGGACGGGAAATGCTTGGTGACCGC
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