mRNA_H-canaliculatus_F_contig12921.2435.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12921.2435.1
Unique NamemRNA_H-canaliculatus_F_contig12921.2435.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12921.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12921contigH-canaliculatus_F_contig12921:155..792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size640
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.2482934-CDS-H-canaliculatus_F_contig12921:154..6281622929023.2482934-CDS-H-canaliculatus_F_contig12921:154..628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12921 155..628 +
1696845651.2224624-CDS-H-canaliculatus_F_contig12921:154..6281696845651.2224624-CDS-H-canaliculatus_F_contig12921:154..628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12921 155..628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.2585533-UTR-H-canaliculatus_F_contig12921:628..7921622929023.2585533-UTR-H-canaliculatus_F_contig12921:628..792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12921 629..792 +
1696845651.2311502-UTR-H-canaliculatus_F_contig12921:628..7921696845651.2311502-UTR-H-canaliculatus_F_contig12921:628..792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12921 629..792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12921.2435.1prot_H-canaliculatus_F_contig12921.2435.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12921 155..628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12921.2435.1

>prot_H-canaliculatus_F_contig12921.2435.1 ID=prot_H-canaliculatus_F_contig12921.2435.1|Name=mRNA_H-canaliculatus_F_contig12921.2435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
GVDKPSCVAEIGGHAVASHTKRTLKAILAVDSHSTVASQCFGHAASCSCD
LTLTGAPCRNLALYHQREETLKRPKHARTQKEALRTTQPNARNCCKFLSS
DVRKHHKSTSRKLQPSVPRERERHGYNPARRQAVKRGERNRRCGNRNRHR
PQLFYSP*
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mRNA from alignment at H-canaliculatus_F_contig12921:155..792+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12921.2435.1 ID=mRNA_H-canaliculatus_F_contig12921.2435.1|Name=mRNA_H-canaliculatus_F_contig12921.2435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12921:155..792+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCGACAAGCCATCATGTGTCGCCGAAATCGGGGGGCACGCGGTTGC
TTCTCACACGAAACGCACGCTGAAGGCAATCCTTGCTGTTGATAGTCACT
CGACAGTCGCCTCACAGTGCTTCGGGCATGCGGCGTCGTGCTCGTGCGAC
TTGACGCTTACGGGCGCGCCCTGCAGGAACCTTGCCTTGTATCATCAGCG
CGAGGAAACGCTGAAACGACCAAAGCACGCTCGCACCCAAAAGGAGGCAT
TACGGACGACCCAACCAAACGCGAGAAATTGCTGCAAGTTTTTGTCGTCG
GACGTACGGAAGCATCACAAATCCACTTCTCGTAAATTGCAGCCCTCCGT
GCCTAGGGAGCGTGAACGCCACGGCTACAACCCAGCACGCAGACAGGCAG
TGAAGAGGGGCGAGCGCAATCGAAGGTGCGGCAACCGGAATCGTCACAGG
CCACAACTATTTTACTCCCCATGAAACCTGTACAGACAGGAGAAACGAAC
GCACACGAGACTGGAGGCAAGACTGGAGGCGAACACAGCCGCAACATCGA
ACGAAAGAGAACGGAAGAAGGGGGGAGGCGGAGGGAAGGGGAAAGGGAAG
ACAAGGGAAGGGAAGGGCAAAATCAAGCGCACATCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12921:155..792+

>mRNA_H-canaliculatus_F_contig12921.2435.1 ID=mRNA_H-canaliculatus_F_contig12921.2435.1|Name=mRNA_H-canaliculatus_F_contig12921.2435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12921:155..792+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCGACAAGCCATCATGTGTCGCCGAAATCGGGGGGCACGCGGTTGC
TTCTCACACGAAACGCACGCTGAAGGCAATCCTTGCTGTTGATAGTCACT
CGACAGTCGCCTCACAGTGCTTCGGGCATGCGGCGTCGTGCTCGTGCGAC
TTGACGCTTACGGGCGCGCCCTGCAGGAACCTTGCCTTGTATCATCAGCG
CGAGGAAACGCTGAAACGACCAAAGCACGCTCGCACCCAAAAGGAGGCAT
TACGGACGACCCAACCAAACGCGAGAAATTGCTGCAAGTTTTTGTCGTCG
GACGTACGGAAGCATCACAAATCCACTTCTCGTAAATTGCAGCCCTCCGT
GCCTAGGGAGCGTGAACGCCACGGCTACAACCCAGCACGCAGACAGGCAG
TGAAGAGGGGCGAGCGCAATCGAAGGTGCGGCAACCGGAATCGTCACAGG
CCACAACTATTTTACTCCCCATGAGGGGTCGACAAGCCATCATGTGTCGC
CGAAATCGGGGGGCACGCGGTTGCTTCTCACACGAAACGCACGCTGAAGG
CAATCCTTGCTGTTGATAGTCACTCGACAGTCGCCTCACAGTGCTTCGGG
CATGCGGCGTCGTGCTCGTGCGACTTGACGCTTACGGGCGCGCCCTGCAG
GAACCTTGCCTTGTATCATCAGCGCGAGGAAACGCTGAAACGACCAAAGC
ACGCTCGCACCCAAAAGGAGGCATTACGGACGACCCAACCAAACGCGAGA
AATTGCTGCAAGTTTTTGTCGTCGGACGTACGGAAGCATCACAAATCCAC
TTCTCGTAAATTGCAGCCCTCCGTGCCTAGGGAGCGTGAACGCCACGGCT
ACAACCCAGCACGCAGACAGGCAGTGAAGAGGGGCGAGCGCAATCGAAGG
TGCGGCAACCGGAATCGTCACAGGCCACAACTATTTTACTCCCCATGA
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