mRNA_H-canaliculatus_F_contig12920.2434.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12920.2434.1
Unique NamemRNA_H-canaliculatus_F_contig12920.2434.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A6H5KYD3_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.820e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    7 ILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            +LRDDGVPIGLS+HECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV
Sbjct:  169 MLRDDGVPIGLSVHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 233
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: D8LN19_ECTSI (Na+/H+ antiporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN19_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.290e-30
Identity = 65/82 (79.27%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 LGILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQ---------------AEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            + ILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQ               AEFPKLSAVLFGEGVLNDAMSILLFQTV
Sbjct:   73 MSILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQPLLCRDAWERQKRNMAEFPKLSAVLFGEGVLNDAMSILLFQTV 154
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A835YKQ9_9STRA (Sodium/hydrogen exchanger family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.550e-29
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 LGILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            L I+RDDGVPIG SLHECMLMAAV SAADEVATLSLIKQ+E+PKLSAVLFGEGV+NDAMSILLF  V
Sbjct:  183 LAIIRDDGVPIGFSLHECMLMAAVLSAADEVATLSLIKQSEYPKLSAVLFGEGVMNDAMSILLFHAV 249
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A7S3NVC6_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NVC6_EUPCR)

HSP 1 Score: 68.9 bits (167), Expect = 2.650e-13
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 ILRDDGVPIG----LSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            I  D   P+G    L+  EC+L++AV  A D VA L+++K+ EFP L+++LFGEGV+NDA++IL+F++V
Sbjct:   68 IFNDYLFPLGHSQRLTTAECLLLSAVLCATDSVAALAIVKETEFPTLNSILFGEGVVNDAVAILIFKSV 136
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A1R2AVU5_9CILI (Na_H_Exchanger domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AVU5_9CILI)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-12
Identity = 32/55 (58.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   37 LSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            LSL +C+L+A+V SA D VA +++IK+ ++P+L  +LFGEGVLNDA+SI+LF+TV
Sbjct:  127 LSLKDCLLLASVLSATDTVAAITVIKETKYPRLHYILFGEGVLNDAVSIVLFRTV 181
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: J9I2Z8_9SPIT (Sodium/hydrogen exchanger n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I2Z8_9SPIT)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-12
Identity = 30/51 (58.82%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 ECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            EC+++AAV  A D VA LS++K+ EFP+L+A+LFGEG++NDA+SIL+F+T+
Sbjct:   99 ECVVLAAVLCATDTVAALSILKEKEFPQLNAILFGEGIVNDAVSILIFETI 149
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A078B7F9_STYLE (Sodium hydrogen exchanger n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B7F9_STYLE)

HSP 1 Score: 68.9 bits (167), Expect = 4.580e-12
Identity = 30/55 (54.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   37 LSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            LS  EC+++AAV  A D VA L+++K+ +FP+L+A+LFGEG++NDA+SIL+F+T+
Sbjct:   25 LSNVECIVLAAVLCATDTVAALTILKEKDFPQLNAILFGEGIVNDAVSILIFETI 79
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A077ZYX6_STYLE (Sodium hydrogen exchanger n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZYX6_STYLE)

HSP 1 Score: 68.6 bits (166), Expect = 6.320e-12
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    7 ILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            +L  D   + LS  EC+L+A+V  A D VA L+++K+  +P L+++LFGEGV+NDA+SILLF+ V
Sbjct:   81 VLHSDFSAMRLSSKECLLLASVLCATDTVAALTIVKEKNYPILNSILFGEGVVNDAVSILLFRAV 145
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A4D9D3Z2_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3Z2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-11
Identity = 31/55 (56.36%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   37 LSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            L +++ +L+++V S+ADEVA L+++ + + PKLSA+LFGEGVLNDA+SILLF++V
Sbjct:  202 LEINDILLLSSVLSSADEVAALAMVNKDDHPKLSALLFGEGVLNDAVSILLFRSV 256
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BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Match: A0A7S3JLB4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JLB4_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 1.710e-11
Identity = 27/54 (50.00%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   40 SLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 201
            ++ EC+L+++V  A D VA LS++K++E+P L+++LFGEGV+NDA++IL+F+ V
Sbjct:    1 TISECLLLSSVLCATDTVAALSIVKESEYPTLNSILFGEGVVNDAVAILIFKAV 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12920.2434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYD3_9PHAE1.820e-3196.92Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LN19_ECTSI2.290e-3079.27Na+/H+ antiporter n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YKQ9_9STRA8.550e-2986.57Sodium/hydrogen exchanger family-domain-containing... [more]
A0A7S3NVC6_EUPCR2.650e-1347.83Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1R2AVU5_9CILI1.320e-1258.18Na_H_Exchanger domain-containing protein n=1 Tax=S... [more]
J9I2Z8_9SPIT1.830e-1258.82Sodium/hydrogen exchanger n=1 Tax=Oxytricha trifal... [more]
A0A078B7F9_STYLE4.580e-1254.55Sodium hydrogen exchanger n=1 Tax=Stylonychia lemn... [more]
A0A077ZYX6_STYLE6.320e-1249.23Sodium hydrogen exchanger n=1 Tax=Stylonychia lemn... [more]
A0A4D9D3Z2_9STRA1.630e-1156.36Na_H_Exchanger domain-containing protein n=2 Tax=M... [more]
A0A7S3JLB4_9SPIT1.710e-1150.00Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12920contigH-canaliculatus_F_contig12920:178..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.5e-24
Seed eggNOG ortholog2880.D8LN19
KEGG koko:K12041,ko:K14724
KEGG TC2.A.36.1.12,2.A.36.1.3,2.A.36.1.9
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
Ec32 ortholog descriptionCation/H exchanger, CPA1 family
Ec32 orthologEc-13_002140.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.2024763-CDS-H-canaliculatus_F_contig12920:177..2941622929023.2024763-CDS-H-canaliculatus_F_contig12920:177..294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12920 178..294 +
1696845651.2017865-CDS-H-canaliculatus_F_contig12920:177..2941696845651.2017865-CDS-H-canaliculatus_F_contig12920:177..294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12920 178..294 +
1622929023.2159908-CDS-H-canaliculatus_F_contig12920:2651..27351622929023.2159908-CDS-H-canaliculatus_F_contig12920:2651..2735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12920 2652..2735 +
1696845651.2134597-CDS-H-canaliculatus_F_contig12920:2651..27351696845651.2134597-CDS-H-canaliculatus_F_contig12920:2651..2735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12920 2652..2735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12920.2434.1prot_H-canaliculatus_F_contig12920.2434.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12920 178..2735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12920.2434.1

>prot_H-canaliculatus_F_contig12920.2434.1 ID=prot_H-canaliculatus_F_contig12920.2434.1|Name=mRNA_H-canaliculatus_F_contig12920.2434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=67bp
LGILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLF
GEGVLNDAMSILLFQTV
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mRNA from alignment at H-canaliculatus_F_contig12920:178..2735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12920.2434.1 ID=mRNA_H-canaliculatus_F_contig12920.2434.1|Name=mRNA_H-canaliculatus_F_contig12920.2434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12920:178..2735+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGGAATCCTGAGGGACGACGGAGTGCCGATCGGGCTGTCCCTCCACGA
GTGCATGCTCATGGCGGCCGTCTTCAGCGCGGCGGACGAGGTGGCCACGC
TGTCGCTCATCAAGCAGGTACACGCCCTCGCCTGTCTCTGTTCTCTCTTT
TTTCTCTTTTCTATTATTTTTTTCTCTCTCTTTTTGCCCCCTTTTTTTCC
TTTTTTGTGTTCTCTTTTTTTCTCTCTCTCTATTTTCTCTCTTTTCTATC
TTTTTTTTTTCTTCAACACCCTCCTACCGGTAAGCTCTTCCCAAGGCTCT
GACCTTGGCACCAACTTGTTGTCCGGTTCGCACGAAGAATCTACGGGATC
TCCGACGTCTACGCGGTACTTCTTTGGCCGGGAATGTATAGAACCGCATG
TACTTCATCATAGAAAAGACACAACAACACCGTAGGGACGCCTCCTGGGG
TGTGTCGTGCGAGACGTGCCTCGCGGTTTCTGCTGAGGTCCCAACAGTGA
GGGTTCATCGTGTAGGTGGGTAGGGACGAAGTGTATGAAGAGGAAACACT
AGTGAAATTCCGCGCAGTGTGTGTGCGGTGAAGAAGTTTGTACGGATTGT
CGATCGGTGAATTGCCGTAAGAATCGGCGTCTTGGCACAGGGGTGCGATG
TTTTTTCGCGGCCCGGTATCCGGACGACGGGGAGGGCGCAGACGTTGAAA
AGTCCACGTCCGGAATGCACGGGACACGATCTTCCCGATGGCACCCTCTC
CGACGTTGGCACCCTCTCCGTTGTCGAGATATCGGTCCGCGAAAAAACAT
CGCACCCCTGTGCCAAGACGCCGAAAATCACGGAATCCGCATGCAAGTAC
TTGCTCATCTCGGGGACCACGTGGACGGGAACGGGAGAGCACGGTTTGGC
TGGTGCCGATTTGGATGGGATCGCGCTTTAAATTTGTGATTTCACACGGC
AACGTGCCAAGTACGAATTGGGTGGTTTTCCGGTGGCGCGAAACAAGTGC
CGCGGGAGTATTGCCGGAGGGAGCCTTGATTTTTTCCAACACAGCGGGCA
TTGAAACATCAAGAATGCCTCCCAATACAGGGTCCGGCACAAATGTGCCA
AGGGTGTGTTCTGCAGGGCACCAACAGAACCGCACCAGGGGTGTTTTTCC
TCTGCAAATACCCCCCTACAGAATGCTTCCGTGAGTTCGGTGGCGGTTTC
GGTGCCCTTCAAGGAGTTCTGTGAGTTCTATGGCGTTTCCGGTACCCCGC
GAAAGACTTCCGTGAGCTCTGTGGCGGTTTCGGCACCCCACAGAAGACTC
CCGAGAGTTCTGCAACGCTTCCGACGCCCCACAGAGATCTCCCGTACCCT
AAAGAACGCACCCTTGGAAACGTGTGTTTCTCGAAAGGCGAGGCGAGACG
GCGCAGAAACGGACAAAAGGTACAGCTTTGAAAAAAAAGAAAAAAGAGGT
ACAGCTTTGTCTTTGGAAAATAGTCAAAGGGGGGTATACCCTCTTTTGAC
TAATTCCCTTTTTCTTTCCCTCCCCGCATATTTTGGTCTGTCTTTGCGGC
AAGCGCCTTCAACACTTGAGCAGCCGCTGCTGCGACGTGGAACCGTAGTC
GTGCGTCCGTGTCCTGTCTCGAAGAAAAACATGACCGCGCCGGAGGAACA
CCTCGCGTTAGACGCACCTCGATGTTGTCTTGTGAGGATTCGTCGTGGGG
GTAGGGAGTAAAAAAAAAACATGGACGTGATAAAAAGTTGTGAAACTCCG
CGCAGTGTGTGCGCGGTGAAAAAATGTGGACGGAGTTTCGATTGGTGGGT
TATGCGTGCCGTGCCCCTCAAGTCGAAAGCACGCCGCGAGGCGCAGCATC
CGTCCGATACGGCGGTGCCCCCCCCCCCCTCTCTCGGCTCTCCCCGAGCG
AGCGAGGCACGAGTGTTTCGGCCATTTCTGAAGCGGAGCAAGTCGGCGGC
GAACACGAAGATACCGTCTTCGAGCCGAGGTTTCCTCGTGCTGCTCGCCG
GATTCGGGTGCGTTTCAGGAGTCCGCGGCGTGCTCTCCGGGGAGAAGATC
CAAAAACACCAGGGGAGTTTGCACGCTCCTCTGAGGCAAAGCGATGGCGA
CTCAGGAGGATCGTGCTGAATTCCTTGCGGCGATGGTTCGGCACCATGGT
GGAAATAAGCGAGAGGAGGAGTCTTTCTGTTGACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCTTCTCCCTCGCC
CCGGCCGGCGGGGGGCGGGCGGGGCGCGGNNNNNNNNNNAGAGGGGGGGG
GGCGGGGGGGGCTGGGTGTATTCTGGGTGGGGGTGGGCGGGGCCCCTTGG
TGAAAAAGAGGGAGGGGGGGGTTTTCTGTTGTCCCCCCCCCCCCCCCCCC
CCCCCGTCCCCGTCCCCGTCCCCCCCTTCTTAACATTTTCCCCTTCGCGG
TGCGGCGTGGGTGTGGTACGTCAGGCGGAGTTCCCCAAGCTGAGCGCCGT
GCTCTTCGGCGAGGGAGTGCTCAACGACGCCATGAGCATCCTTCTCTTCC
AGACGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12920:178..2735+

>mRNA_H-canaliculatus_F_contig12920.2434.1 ID=mRNA_H-canaliculatus_F_contig12920.2434.1|Name=mRNA_H-canaliculatus_F_contig12920.2434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12920:178..2735+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGGAATCCTGAGGGACGACGGAGTGCCGATCGGGCTGTCCCTCCACGA
GTGCATGCTCATGGCGGCCGTCTTCAGCGCGGCGGACGAGGTGGCCACGC
TGTCGCTCATCAAGCAGCTCGGAATCCTGAGGGACGACGGAGTGCCGATC
GGGCTGTCCCTCCACGAGTGCATGCTCATGGCGGCCGTCTTCAGCGCGGC
GGACGAGGTGGCCACGCTGTCGCTCATCAAGCAGGCGGAGTTCCCCAAGC
TGAGCGCCGTGCTCTTCGGCGAGGGAGTGCTCAACGACGCCATGAGCATC
CTTCTCTTCCAGACGGTGGCGGAGTTCCCCAAGCTGAGCGCCGTGCTCTT
CGGCGAGGGAGTGCTCAACGACGCCATGAGCATCCTTCTCTTCCAGACGG
TG
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