mRNA_H-canaliculatus_F_contig1292.2432.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1292.2432.1
Unique NamemRNA_H-canaliculatus_F_contig1292.2432.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A6H5K8Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z9_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 9.440e-151
Identity = 240/346 (69.36%), Postives = 272/346 (78.61%), Query Frame = 3 
Query:   42 VKSRSIQREGV-RFFLVVLLLAATARAFLVPIAA--QREHA--SKIPTSTPSTATPAAALYTTTAWRNTKRRSPSSSRFCSRSPEYLSEKQGPAGASGLSATLSVGDAATRAEALTGFFAAVVSAATVLAADAPGANSDGLGVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESGGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKVDPSVIYGDMDPMSPPFETPSEALRERYGGGNGGSDRPAWWGKPLAEAGGFSDWRQ 1064
            ++SR+ +R+GV R     LL+A  +RAFL+  A   +++HA  SK+              +     R+  R S   +R+C+ SP+  + +QG AGASGLSA L V  AATR EAL+GFF AV  +  VLA + P +NSDGLGVVDDLLADCPSTPTCVSSQDDRPY FMEPW+Y+GPFERSMSRLR YLE  GAKVIA+S RYLRVEFE+P A PASVDDAEFYFTPGDALVQFRCARRNGPTDFGANR+RMD IR ALKFESIPVLRNRKRA FFGESPIDSFGPSFG  DPSVIYGD DPMSPPFETPS+ALRERYG G GG+DRPAWWGKPLAEAGGF+DWRQ
Sbjct:    1 MESRTSERQGVMRLMATTLLVAVGSRAFLIKTAVPPRQQHALQSKL-------------QHQPYRPRHMTRHS---ARYCAGSPDVCAMQQGTAGASGLSAILPVDAAATRTEALSGFFQAVFLSTAVLA-NPPDSNSDGLGVVDDLLADCPSTPTCVSSQDDRPYPFMEPWSYDGPFERSMSRLRNYLEFNGAKVIATSPRYLRVEFESPNAIPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRRRMDGIRQALKFESIPVLRNRKRALFFGESPIDSFGPSFGMADPSVIYGDADPMSPPFETPSDALRERYGEGGGGADRPAWWGKPLAEAGGFADWRQ 329
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: D8LJJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ3_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 6.830e-108
Identity = 192/291 (65.98%), Postives = 219/291 (75.26%), Query Frame = 3 
Query:   42 VKSRSIQREGV-RFFLVVLLLAATARAFLVP--IAAQREHA--SKIPTSTPSTATPAAALYTTTAWRNTKRRSPSSSRFCSRSPEYLSEKQGPAGASGLSATLSVGDAATRAEALTGFFAAVVSAATVLAADAPGANSDGLGVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESGGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKV 899
            ++ R  QR+GV R     LL+A  +RAFL+   +  +++HA  SK+              +     ++  RRS   +R C+ SP+  + +QG AGASGLSATL V  A TR EAL+GFF AV+ +  VLA + P +NSDGLGVVDDLLADCPSTPTCVSSQDDRPY FMEPW+Y+GPFERSMSRLR YLE  GAKVIASS RYLRVEFEA  A PASVDDAEFYFTPGDALVQFRCARRNGPTDFGANR+RMD IR ALKFESIPVLRNRKRA FFGESPIDSFGPSFG V
Sbjct:    1 MEPRRSQRQGVMRLMATTLLVAVDSRAFLITTVVPPRQQHALQSKL-------------QHQPYLPQHLTRRS---ARDCAESPDVCAMQQGTAGASGLSATLPVDAAVTRTEALSGFFQAVLLSTAVLA-NPPDSNSDGLGVVDDLLADCPSTPTCVSSQDDRPYPFMEPWSYDGPFERSMSRLRNYLEFNGAKVIASSPRYLRVEFEAVNAIPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRRRMDGIRQALKFESIPVLRNRKRALFFGESPIDSFGPSFGMV 274
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A6V1P1K7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P1K7_HETAK)

HSP 1 Score: 194 bits (492), Expect = 5.150e-54
Identity = 109/208 (52.40%), Postives = 141/208 (67.79%), Query Frame = 3 
Query:  378 FFAAVVSAATVLAADAP--GANSDGLGVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLES-GGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSF------GKVDPSVIY-GDMDPMSPPFETPSEALR 971
            F+A    A  V A+ AP  G   + LGVV+ LLA+CP TPTCVSSQDDRPY F+EPW Y+    R+M RL   LES  G K+I  +  YLRVEF   +    SVDDAE+YFTP D+++QFR ARR+  TDF ANR+RM+++RIAL +E IPVLRNR+RA  F ES +DSFGP+        ++D   +Y GD+DP +P +E PS+ +R
Sbjct:   66 FWAISTMAYPVSASPAPIEGNCVNCLGVVNQLLAECPGTPTCVSSQDDRPYNFLEPWQYDTTQARAMRRLSDKLESIEGVKIIKKTEDYLRVEFHDMRT--GSVDDAEWYFTPNDSIIQFRAARRDAKTDFAANRRRMENLRIALGYEKIPVLRNRQRALVFFESLLDSFGPATIRDMTPEEMDAMELYRGDLDPRAPAWEAPSKQMR 271
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A835YWY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.390e-53
Identity = 104/197 (52.79%), Postives = 126/197 (63.96%), Query Frame = 3 
Query:  447 LGVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLES-GGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPS-FGKVDPSVI----YGDMDPMSPPFETPSEALRERYGGGNGGSDRPAWW 1019
            +GVV+DLLA CP  PTCVS+QDD+PY FMEPWAYE    ++ + +  YL +  GAK++A S RYLR E  +      +VDD E Y TP D  VQFR  RR+G TD G NRKRM+ +RIAL FE IPVLRNR RAF FGES +DSFGPS F    P  +      D DP +P FETPS +L++  GG         WW
Sbjct:   42 VGVVNDLLAPCPDAPTCVSTQDDKPYCFMEPWAYEVTTSQAKTLIANYLYTLPGAKIVAESERYLRAEVASLGGI--AVDDVELYLTPNDYTVQFRANRRDGVTDLGQNRKRMERMRIALGFEKIPVLRNRTRAFIFGESFLDSFGPSGFNNEVPEEMAPGAMWDRDPKAPVFETPSPSLKKALGG---------WW 227
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: W7TBJ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBJ3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.130e-49
Identity = 99/196 (50.51%), Postives = 128/196 (65.31%), Query Frame = 3 
Query:  399 AATVLAADAPGANSDGL---GVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPF-ERSMSRLRTYLES-GGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKVDP-----SVIYGDMDPMSPPFETP 956
            A T+L    P A    L   GV+D LLA+CP+  +C SSQDDRP  F EPW YE    E++M RLR+Y+E+  GA+ I++  RYLR E +       ++DD EFYFTP D+++QFR ARR    D GAN+KRM+ IRIAL FE IPVLRNR+RA FF ESP+D +GPS+ +  P        YGD DP++P +E P
Sbjct:  104 ATTILTIQTPRATQARLLPLGVIDQLLAECPTEKSCASSQDDRPPVFQEPWEYEDATQEKAMRRLRSYVENLPGAETISAEDRYLRFEIKED----GNIDDTEFYFTPNDSIIQFRSARRGDGRDRGANQKRMEKIRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYREDAPRPEDLDQAYGDSDPLAPGWEAP 295
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A7S2ZDZ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDZ8_9RHOD)

HSP 1 Score: 168 bits (426), Expect = 6.820e-45
Identity = 102/202 (50.50%), Postives = 123/202 (60.89%), Query Frame = 3 
Query:  363 EALTGFFAAVVSAATVLAADAPGANSDGLGVVDDLLADCPSTP-TCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESG-GAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGK-------VDPSVIYGDMDPMSP 941
            +A+ G   +V+    V A    G   + LGVVD LLADCP    +CVSSQDD P  F EPW Y+G    +  RL   LES   +++IAS S Y+RVEF    AF  +VDDAEFYFTPGD  +QFR  RR G TDFGAN+ RM+SIR  L+F  +PVLRNR+R F F ESP DSFGP   K        D      D+DP+SP
Sbjct:   39 KAVLGAATSVILVGAVSAPPIDGNCPECLGVVDGLLADCPENSFSCVSSQDDAPRHFQEPWEYDGTSSSAQIRLEGLLESEYTSRIIASRSGYIRVEFF--DAF-GNVDDAEFYFTPGDNTIQFRSNRRGGGTDFGANKLRMESIRKKLRFAKVPVLRNRRRVFVFFESPFDSFGPGTSKNMDVGKAEDGPATRFDVDPLSP 237
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A7S2MSC2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MSC2_9EUKA)

HSP 1 Score: 158 bits (399), Expect = 4.870e-41
Identity = 82/181 (45.30%), Postives = 109/181 (60.22%), Query Frame = 3 
Query:  435 NSDGLGVVDDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESGGAKVIASSS-RYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPS-FGKVDPSVIYGDMDPMSPPFETPSEALR 971
            +S  L  +D +  DC     CVSSQDDRP  +  PW  EG      + LR  +   G +V+A    RYLR EFE       ++DD +F+FTP D LVQF+  RR G +DFG NRKR++ +RIAL +E +PVLRNR+RA    ESP+DSFGP+ +G      I+ D DPM+  F+ P+ A R
Sbjct:   62 SSPSLWPIDGIFPDCEGGSACVSSQDDRPTVWDNPWVSEGSLSDGYTALRRVINKLGGRVVAEDGERYLRAEFEDSGFIGVAIDDCQFFFTPNDTLVQFKAVRRGGASDFGVNRKRLEKLRIALGWEKVPVLRNRRRALVVVESPLDSFGPALYGD-----IFEDKDPMAGAFKPPTGAER 237
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: R1BF77_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BF77_EMIHU)

HSP 1 Score: 152 bits (383), Expect = 6.720e-39
Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 3 
Query:  459 DDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESG-GAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSF---------------GKVDPSVIYGDMDPMSPPFETPSEALRERYGG 986
            D + +DC  +  CVSSQDDRP  +  PW  E     +M RLR  +E     KV+    RYLR EF +      +VDDAEF+FTP D LVQFR ARR    DFGANRKR++  RIAL +E + VLRNR+RA    ESP DSFGP+                 + +   +YGD+DP++ P+  P+ ++R+   G
Sbjct:   33 DGIFSDC--SGFCVSSQDDRPAVWDNPWVAEQALPSAMERLRRVIELKLQGKVVEQDERYLRAEFASRGPLGDAVDDAEFFFTPDDVLVQFRAARRGDAPDFGANRKRLERARIALGWEKVEVLRNRRRALVVVESPFDSFGPATYERDELGFTNRDLVPAEANQKELYGDLDPLAAPWRKPTPSMRDAKDG 222
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BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A7S0EPF0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPF0_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 3.930e-37
Identity = 82/190 (43.16%), Postives = 102/190 (53.68%), Query Frame = 3 
Query:  459 DDLLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESGGAKVIASSSRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKVDP---------------SVIYGDMDPMSPPFETPSEALRERYG 983
            DDL  DC ++  CVSSQDDRP  F  PW  E  + + M  L   +      VI    RYLR EF +      SVDD E+YFTP D LVQFR  RR    DFGAN+KR++ +RI L +E + +LRNR+RA    ESP DSFGP   + D                  IY D+DPM+  F  PS ++ E  G
Sbjct:   42 DDLFPDCANS--CVSSQDDRPSVFDNPWIAEQEYPKGMVTLEKAVLKLQGSVIEKDGRYLRAEFASKGPLGESVDDVEWYFTPNDVLVQFRAERRGAGPDFGANKKRLEKMRIGLGWERVEILRNRRRALVVVESPFDSFGPGTYEADELGFSNREMVPAEANQKEIYRDVDPMAAAFRKPSGSMLEGMG 229
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Match: A0A7S0IQF0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IQF0_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 1.220e-35
Identity = 78/188 (41.49%), Postives = 107/188 (56.91%), Query Frame = 3 
Query:  465 LLADCPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYL-ESGGAKVIASSSRYLRVEFEAPKAFPASV-DDAEFYFTPGDALVQFRCARRNG-PTDFGANRKRMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKVDP---------------SVIYGDMDPMSPPFETPSEALRE 974
            L ADCP    C+SSQDDRP  +  PW  E P   +M+RLR  L +     ++ +  RYLR  F +   F + V DD EF+FTP D LVQFR  R+    +D G NRKR++  R+AL +E +PVLRNR+RA    ESP DSFGP+  + D                + +YG++DP++  +  P  A+RE
Sbjct:    2 LFADCPDALACISSQDDRPQFWEPPWIAEEPLGSAMARLRRILIDRFDGALVQADERYLRARFASRGLFGSPVIDDVEFFFTPNDTLVQFRAVRQGAMQSDLGENRKRLEKARLALGWEQVPVLRNRRRALVVVESPWDSFGPAMSERDELGFSPRELVPAETPRAELYGELDPLTARWAPPPAAMRE 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1292.2432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8Z9_9PHAE9.440e-15169.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJJ3_ECTSI6.830e-10865.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1P1K7_HETAK5.150e-5452.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YWY1_9STRA2.390e-5352.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TBJ3_9STRA2.130e-4950.51Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2ZDZ8_9RHOD6.820e-4550.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2MSC2_9EUKA4.870e-4145.30Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1BF77_EMIHU6.720e-3943.23Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S0EPF0_9EUKA3.930e-3743.16Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S0IQF0_9EUKA1.220e-3541.49Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1292contigH-canaliculatus_F_contig1292:10980..17074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.1
Seed ortholog evalue3.9e-89
Seed eggNOG ortholog2880.D8LJJ3
EggNOG OGs2E3E0@1,2SAH2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-17_002200.1
Exons5
Model size1663
Cds size1059
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.8883617-UTR-H-canaliculatus_F_contig1292:10979..115571622929022.8883617-UTR-H-canaliculatus_F_contig1292:10979..11557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1292 10980..11557 -
1696845651.0298758-UTR-H-canaliculatus_F_contig1292:10979..115571696845651.0298758-UTR-H-canaliculatus_F_contig1292:10979..11557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1292 10980..11557 -
1622929022.972917-UTR-H-canaliculatus_F_contig1292:17048..170741622929022.972917-UTR-H-canaliculatus_F_contig1292:17048..17074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1292 17049..17074 -
1696845651.089313-UTR-H-canaliculatus_F_contig1292:17048..170741696845651.089313-UTR-H-canaliculatus_F_contig1292:17048..17074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1292 17049..17074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.9014635-CDS-H-canaliculatus_F_contig1292:11557..117461622929022.9014635-CDS-H-canaliculatus_F_contig1292:11557..11746Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 11558..11746 -
1696845651.0405092-CDS-H-canaliculatus_F_contig1292:11557..117461696845651.0405092-CDS-H-canaliculatus_F_contig1292:11557..11746Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 11558..11746 -
1622929022.9142523-CDS-H-canaliculatus_F_contig1292:12474..125551622929022.9142523-CDS-H-canaliculatus_F_contig1292:12474..12555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 12475..12555 -
1696845651.050797-CDS-H-canaliculatus_F_contig1292:12474..125551696845651.050797-CDS-H-canaliculatus_F_contig1292:12474..12555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 12475..12555 -
1622929022.9265957-CDS-H-canaliculatus_F_contig1292:13243..134471622929022.9265957-CDS-H-canaliculatus_F_contig1292:13243..13447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 13244..13447 -
1696845651.059783-CDS-H-canaliculatus_F_contig1292:13243..134471696845651.059783-CDS-H-canaliculatus_F_contig1292:13243..13447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 13244..13447 -
1622929022.939153-CDS-H-canaliculatus_F_contig1292:13955..140811622929022.939153-CDS-H-canaliculatus_F_contig1292:13955..14081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 13956..14081 -
1696845651.0705278-CDS-H-canaliculatus_F_contig1292:13955..140811696845651.0705278-CDS-H-canaliculatus_F_contig1292:13955..14081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 13956..14081 -
1622929022.9583528-CDS-H-canaliculatus_F_contig1292:16589..170481622929022.9583528-CDS-H-canaliculatus_F_contig1292:16589..17048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 16590..17048 -
1696845651.0797405-CDS-H-canaliculatus_F_contig1292:16589..170481696845651.0797405-CDS-H-canaliculatus_F_contig1292:16589..17048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1292 16590..17048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1292.2432.1prot_H-canaliculatus_F_contig1292.2432.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1292 11558..17048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1292.2432.1

>prot_H-canaliculatus_F_contig1292.2432.1 ID=prot_H-canaliculatus_F_contig1292.2432.1|Name=mRNA_H-canaliculatus_F_contig1292.2432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=353bp
MKHALVKSRSIQREGVRFFLVVLLLAATARAFLVPIAAQREHASKIPTST
PSTATPAAALYTTTAWRNTKRRSPSSSRFCSRSPEYLSEKQGPAGASGLS
ATLSVGDAATRAEALTGFFAAVVSAATVLAADAPGANSDGLGVVDDLLAD
CPSTPTCVSSQDDRPYAFMEPWAYEGPFERSMSRLRTYLESGGAKVIASS
SRYLRVEFEAPKAFPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRK
RMDSIRIALKFESIPVLRNRKRAFFFGESPIDSFGPSFGKVDPSVIYGDM
DPMSPPFETPSEALRERYGGGNGGSDRPAWWGKPLAEAGGFSDWRQSRFA
AT*
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mRNA from alignment at H-canaliculatus_F_contig1292:10980..17074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1292.2432.1 ID=mRNA_H-canaliculatus_F_contig1292.2432.1|Name=mRNA_H-canaliculatus_F_contig1292.2432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6095bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1292:10980..17074- (Hapterophycus canaliculatus Oshoro5f female)
CAGCTACCTTGGTGTCCTAGGAGACTATGAAGCATGCGCTGGTAAAATCG
CGCAGCATACAGAGGGAAGGGGTGCGTTTTTTCCTGGTTGTTCTACTGCT
CGCAGCTACCGCGCGGGCATTCCTTGTCCCAATAGCGGCCCAACGAGAAC
ATGCGTCCAAAATTCCAACATCAACACCATCGACGGCAACTCCTGCTGCA
GCACTGTATACGACCACAGCCTGGCGAAATACGAAGCGGAGGTCACCTTC
CTCCTCGCGCTTTTGCTCCAGATCGCCGGAGTACTTGTCTGAGAAGCAAG
GACCTGCTGGAGCCAGCGGTCTATCTGCTACCCTCTCGGTCGGCGATGCC
GCAACGAGAGCAGAAGCGCTGACTGGATTTTTCGCTGCCGTAGTATCAGC
AGCGACCGTCCTTGCCGCCGATGCTCCCGGCGCTAACAGCGATGGGCTTG
GAGTGGTCGACGACCTGCTTGCAGATTGTCCCTCGGTGAGAGCCAAGCCT
GTCGTGAGCGTTGCTTGAGCCTAGCCTCCCGTCGCTGCTGTGCCCGTACG
CACCTCGGTGGTGTTCCACAGATTGAGTCAGCCCGCCTCCTCCTCTTCGC
CCCGCGATGGATCTCTTGATGATTACCGCATGCATTCGCAATTTGCCAAT
TTTCATGCCTCACGTGTACTGTAGGGGTAGGTAAAAAAGCGTAGCTCCCA
GCCCGAAATCAGTCTCTGTTGCGATACTTCAGATGACTGCTATGGGTTCG
AGCAGCAAGTGCTCCCGCATAGGGACTATGCCATGCATCTTTCGAATTTT
CAATTCTCGACGGGTAGAAGTACATGAAAGTCCAAGAATATTTCGTAAGG
TAACGCTTCTCTGCTCGACGGGGGCTCCATCTTCGGCCGGGATCCTCCGT
CAAGGTTTCATTTCCTGTATCGTGGTGAGAAGTGTTGCCGTCAATCTTGA
CCGAGATGGACACCTTTGTCTACAAGTTTCAAGTTTGAGCCGAAATTTGC
ACGTTAGCTCTGACCGACAAAACTTGAGATGCCGCGAGATCAGAAAATAC
TCCGTGGCATGGCAAACTCCAACTAACCCAAAAACCACTACAGTACCCTA
TTCTTGGCGGGTACGTATGACAGAAAAATTAGCCGTTTTTTTTTTTCCTC
CAGTCGCGTTCCATTGGTCACAGACCACAGTCCCGTAGGAGAAATCACAG
GAAGGAACATGGCGAGAACGGGCACCTATACCTGCCATATGTCCAAACAT
TGTAAACCTTAAGTCTCAAGCAAAGTCACTCGGGAGTCAGCCTCAACGTT
CTTTAAAATCAAAATGTAACAAGCGAGTCACAAACCCAAAAGGACCAAGA
GTTCGAGAGGTGAAAACAGGAGGAAGGGTACACGCGCACACACACGAGGA
CACCAGCCCGCGCCATCAGGCACTACTGTCGATGGCATAGAGGGAGAGAA
GCTTGAGGGTTGTCGGCGTGTGTCGCGTGTGCTTGTCCCTTGAAGCCGCG
ACAGAGCAACTCTCTAGCTGCTGCAGCTGCTTACTGTTGTGCTCTTGACC
GTTAGACTTCTGTGTCCACGACCACAAACGGGGTGTTGCGAGTCAATGGT
GGGAAGAAAGGAATGCAGTATACTTGTAGCTTAGCTCTTGTGAACGAGCG
ACTCTTCAGCGCTTCACCCCTGTCAGAGGTATCTCCGAATACGCACGTGA
CGCTTTTTATGAGTGTAGCATTTATCTGGAGAGCAGCACAAGAGTAACGG
AGTGAAAACGGAGCGAAAAAAGCAGGGCTGTCCTCGGTACTTTTCCGGCC
GACCGCGGTAACCAGGAAGTCTAGGATATCAACGTCATTCATGAGGAATG
AAAAAATTCGAAGGCACGACAACAAAGCCACAGTCATGATGAATCGAGTG
GCGGTGATTTTTTTTCATGTGCCTAAGATACGGAGCACCAGAACTGCGGT
AACGATACCACGGTATATTGGAACCTAGGATACGGAGCACCAGAACTGCG
GTAACGATACCACGGTACTTGGAAAAACAATATACCGTGGTATCGTTACC
GTGGTGCTAACGCGATACTCACCGGGTGCAACCAAACAAATAGAGCGCCA
TTCGATGAATCATGATTAAAGGCTTGTTATGATGCTGTTGATACTCTTCG
CTGTTGGTTAGGGACGCTGCTATCTTTGATTTCCTGCCGTTACCGCAGTC
TACGGTATTTCTACCGAGGACAGCCCTGGAAAAAAGTTGTGGAACAACCG
GTCCTCCTCTCATCGTGCAGCAGCAGCCGCAGCTATTTTTGCTCACGGCA
TGGGATCATCATTTGTTTGGTTTGAGACCGAATTTGAAGCGAACATGTGT
GTTGGGAAGGACACGGAGAAAGCCCTCCAACTGCATGTGTGTGCGCGAGT
CAATTGTCTGTGTCTTCAGGAACTGCTTGTGTATGCCCTCGTTTGCCCAG
GCGTATCTGCTGTGTGCTGCCTCGGGTCCTTTGAGTTTTAGGCCACAACA
GGTGTTCCTCGCAGTGACGTTGCCTTACGTTCAGCCCCCGCTCATTCACC
AGGAATGGACGGTCCCGCCGGAGAGCGGAATCGCACGGGATACGAAATTT
TAAAAGAATCGAACAAAAGAATAAACCATGAAATCAACAGATACAAAACC
TAAGTCATTCCTCGGAAATAATTGGCGCCAGATTGCCCTTCTAGTAGTTT
TTGGGTTGACCGAATCTTGGCCCGTGACATCAGATTTTCACCTAACGCGG
TGAAGAGAATCTGACTCTGATCAATGTGATAGTTGGCTTATGTTCAGACT
TCCGAGGAAGCTGCTAGTTTTGTTTGTCAGATGTTCAGATCGCTTTTGGA
CAAAGAGATAAGGATGCCTTTCAAAACTCTGGACCTGAACCGTGAAAGCT
CTTCTCCCCCTGGTAAGTCAGTCCATCAAGATCGCATGTTCACCGTGCTG
CCATAAGAAACACCTGTGTCGTGTTGGGTTCGCGATTCGGCAGACTCCGA
CGTGCGTGAGCTCCCAGGACGACAGACCGTACGCCTTCATGGAGCCGTGG
GCATACGAAGGTCCCTTCGAGAGGTCGATGAGCCGCTTGAGGACCTATCT
GGAATCTGGTGGCGCCAAGGTCAGCTATGAAACAATGCGCGTGAAACTCT
CGCGCCTTCATGATTTTGGGAGTGCTCCAAGCACAAAGCACTTCATTTCG
CATCACCCCCCGAAAAATAGAGACCATAAAAAACAACCTTCCTTCTCGGT
ACACTCTCAGGCACTCGCGAGTAAGTTGTTCGCGTGGCAATTCCTAACGG
AAAACGACGAGAAGAGTCCTTATTTCTGTATTTGGCCTACGAAGAGTGAA
CCGCTTCTGCCGTGTAGGCTTCGTTACCTGACGATTGTGCGATGTTTGCC
AAAGTAGATATGGAGGCTTTATTGTTGAGGCTAAATTAATCGCTCACCTT
GAGCGGCTGCTTGAGCTGTGAAACGCCTCCGACAGATCTTGCGCATGCAT
CTGGAGACCACCTATCCGTTGCATAGCAGTACCGCCCCCGCGATGAAGAA
ATTATGTAAGCTAAGTGCCACCGGCCTAACAAACGTGATGCCGTTGACGA
CGACTGCAAAACAAACGACAAGAATAGGTGATCGCATCGTCGTCCCGGTA
CCTGCGTGTGGAGTTCGAGGCGCCAAAGGCATTTCCTGCATCGGTGGACG
ATGCCGAGTTCTACTTCACACCCGGCGATGCCCTAGTGCAGTTCCGCTGC
GCCAGGAGGAACGGGCCCACGGATTTCGGGGCAAACCGGAAGCGCATGGA
CAGTATTCGTATCGCGCTCAAGTTCGAATCGGTGAGACTGTAACAGCCCG
ACATGGGGTACGCTAGAGTCGGTGCGAGAACGGGAGGTAGGGAGAGGTGT
AAATCTAGAGCTGTTCCTTCATCCGCATTTGCCTGAACAAACTTATGGCG
TTGTCTTCCGTGGGTATTTTCGCCCACCAACTCTGTACGAGCTTGTCCTT
TTTCCTTCTGTAGAAAAGTCGCCGGATGCTTGTGAAGGCCGTGGCTCAGC
AAGAACACAAGCTCGACTTGTCATTACTCGGCGCCAGTACTGTACCTTTT
GTCGACCCGTTGGTCTCTTTACAAGTAGCTGTCTTTTGTATATTCCATAT
TCTGGATATTTATATTCGAAAGATGGCGCTCTACTAAGCGGCACATATTT
TGTTGCAAGGTAATTGACTGTTGCTCCTGTCGCGGTTGCTTCTCGATGCC
GCTCCGTACGGTCGTCCCTCTGCAATCCGCCTAGAGTGCACTGGTTCAGA
CTAAAACACAACCGCTGGAGTCGTCACGCGAACTCGCCTTCCCCTTCCAA
CTGCGGCCATCCACTCGCTCGAAGATGCCGCTCCCACGCCGTGCACCCTC
ACTCTCTGCCCCCCTTATGTTATCTTCCCTTTTCTTGTCTTTTCTGCGTT
CCTTCGTCGCTCACCGTCCGGCCCTACCGCTTTACCAATTGCCCTTCTGT
TGTCGTCGTAATTGGGCAGATACCAGTGCTGCGTAATCGAAAGCGGGCGT
TCTTCTTCGGCGAGAGCCCCATTGACTCCTTCGGACCTTCGTTCGGAAAA
GTGAGTCAGTTTTCGAGACGCACACTTCTATTACAGTAGATATTTGAAGC
TGGGACTCTGCGCATCAAATTTGCAGACTTGTTTTGTGTCTACGCAAACC
GCCCCTTGGTTGTAAATGTTTCGTGGAATTGTGATATTTTACCTCCGAAT
TTCTGGCTGTTCGATATGTGCTTACAGGCTTCATGGCCGGCATGGCCAAA
TGATGGACCGCTATCACGTACTCCCGTCGTATCTTGCTTTGCCCTGGGGT
GCAAGTCACTTTTTAAGACCCGACCGCTTCGACCCGGTCACATGCTGCTG
AACGAGGTTGGTAGTCAAGGTCCTTTCCGTCATCTCATTCTTGTTAAGCA
GGACCGTGTTACGCACACCGCCTCTGAACAGGGCACTTCGTGGGCGCTCG
AGGTGGTCGTGCATTCCATCAGAACGAAGATTTCACGAATAGCCATCATA
GAATGCTGAACGATGCTGCATGGGCAGCAGCAGCTGCCCGAGATGCAGCA
GCAGAACGCTCTTTGATTCCATCCAATTTCCGCGGAGGGTGAAAACGAGG
TGAACATGCCTGGTGGTGGGGCCCCTGTGAGACTTTACCCCGCCGGCTAC
AGATGCAATGGTTCCAATTTTTTTCTGAATAACCATGAGCAAATCCGTAG
CATACGCCTTACCCGCCGTCGCCACTTTCTTCCTCGTCCGCCGATCGATT
CCCTTGCTTCCGGGGTGGGATGGAGCAGGTGGATCCATCGGTAATATATG
GTGACATGGATCCGATGTCCCCTCCTTTCGAAACACCTTCCGAAGCATTG
CGCGAGCGGTACGGGGGAGGAAACGGGGGAAGCGACCGGCCTGCCTGGTG
GGGAAAGCCGCTAGCCGAGGCCGGGGGGTTTTCCGACTGGCGGCAGTCCC
GATTTGCGGCTACATGATGTCCCAATAGCTCGTTCAAAATCCTCGGTAGA
CCAATCTTAAACACGTTGTGTCCGGTCGAAACTCGATGGATGTTGCGTCC
AATCGCTTTCGGAGCGAACGTGAATTTGAGGCCATCTATATTGCGAATGA
TTGTGGTTGGGGAGAGTTTTGATGGAGCGCTTAAGCAATTTGTACAGATT
TCCCTGCGGTTCTTTGTGGAAACCATTCAACCTGGTTGTCTATGCTGTGT
TGATCACGGGCGCTCTGAATGCCGAAGGGGCGCGAAGACGTAGACCGAAG
TTTGCCAATGCGGCTACATAGCATGGTGGAGATGGTAGGAGTCTGACGGA
CCATGTTGAAGGTGAAGTTCCAAACGTACCGCCTGGATGTCGAGCAATGC
GCGAAAAATGGGGTCTCGGCCGAAGCCACTGATCGGTGCTTACTTGCAAA
GTTCAGCGAACAGAAGCCGGGGACGAGAAGCCAAGACGACTACGGTGCTT
ACATCCAGGTAGTGGGGCGCATATTTTAGCCCGGCCACGATTGCTTCGTT
GTTCAAAGCCAGCACGCGGCGATGCTGCGGCAGATCGTAAGAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1292:10980..17074-

>mRNA_H-canaliculatus_F_contig1292.2432.1 ID=mRNA_H-canaliculatus_F_contig1292.2432.1|Name=mRNA_H-canaliculatus_F_contig1292.2432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2118bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1292:10980..17074- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCATGCGCTGGTAAAATCGCGCAGCATACAGAGGGAAGGGGTGCG
TTTTTTCCTGGTTGTTCTACTGCTCGCAGCTACCGCGCGGGCATTCCTTG
TCCCAATAGCGGCCCAACGAGAACATGCGTCCAAAATTCCAACATCAACA
CCATCGACGGCAACTCCTGCTGCAGCACTGTATACGACCACAGCCTGGCG
AAATACGAAGCGGAGGTCACCTTCCTCCTCGCGCTTTTGCTCCAGATCGC
CGGAGTACTTGTCTGAGAAGCAAGGACCTGCTGGAGCCAGCGGTCTATCT
GCTACCCTCTCGGTCGGCGATGCCGCAACGAGAGCAGAAGCGCTGACTGG
ATTTTTCGCTGCCGTAGTATCAGCAGCGACCGTCCTTGCCGCCGATGCTC
CCGGCGCTAACAGCGATGGGCTTGGAGTGGTCGACGACCTGCTTGCAGAT
TGTCCCTCGATGAAGCATGCGCTGGTAAAATCGCGCAGCATACAGAGGGA
AGGGGTGCGTTTTTTCCTGGTTGTTCTACTGCTCGCAGCTACCGCGCGGG
CATTCCTTGTCCCAATAGCGGCCCAACGAGAACATGCGTCCAAAATTCCA
ACATCAACACCATCGACGGCAACTCCTGCTGCAGCACTGTATACGACCAC
AGCCTGGCGAAATACGAAGCGGAGGTCACCTTCCTCCTCGCGCTTTTGCT
CCAGATCGCCGGAGTACTTGTCTGAGAAGCAAGGACCTGCTGGAGCCAGC
GGTCTATCTGCTACCCTCTCGGTCGGCGATGCCGCAACGAGAGCAGAAGC
GCTGACTGGATTTTTCGCTGCCGTAGTATCAGCAGCGACCGTCCTTGCCG
CCGATGCTCCCGGCGCTAACAGCGATGGGCTTGGAGTGGTCGACGACCTG
CTTGCAGATTGTCCCTCGACTCCGACGTGCGTGAGCTCCCAGGACGACAG
ACCGTACGCCTTCATGGAGCCGTGGGCATACGAAGGTCCCTTCGAGAGGT
CGATGAGCCGCTTGAGGACCTATCTGGAATCTGGTGGCGCCAAGACTCCG
ACGTGCGTGAGCTCCCAGGACGACAGACCGTACGCCTTCATGGAGCCGTG
GGCATACGAAGGTCCCTTCGAGAGGTCGATGAGCCGCTTGAGGACCTATC
TGGAATCTGGTGGCGCCAAGGTGATCGCATCGTCGTCCCGGTACCTGCGT
GTGGAGTTCGAGGCGCCAAAGGCATTTCCTGCATCGGTGGACGATGCCGA
GTTCTACTTCACACCCGGCGATGCCCTAGTGCAGTTCCGCTGCGCCAGGA
GGAACGGGCCCACGGATTTCGGGGCAAACCGGAAGCGCATGGACAGTATT
CGTATCGCGCTCAAGTTCGAATCGGTGATCGCATCGTCGTCCCGGTACCT
GCGTGTGGAGTTCGAGGCGCCAAAGGCATTTCCTGCATCGGTGGACGATG
CCGAGTTCTACTTCACACCCGGCGATGCCCTAGTGCAGTTCCGCTGCGCC
AGGAGGAACGGGCCCACGGATTTCGGGGCAAACCGGAAGCGCATGGACAG
TATTCGTATCGCGCTCAAGTTCGAATCGATACCAGTGCTGCGTAATCGAA
AGCGGGCGTTCTTCTTCGGCGAGAGCCCCATTGACTCCTTCGGACCTTCG
TTCGGAAAAATACCAGTGCTGCGTAATCGAAAGCGGGCGTTCTTCTTCGG
CGAGAGCCCCATTGACTCCTTCGGACCTTCGTTCGGAAAAGTGGATCCAT
CGGTAATATATGGTGACATGGATCCGATGTCCCCTCCTTTCGAAACACCT
TCCGAAGCATTGCGCGAGCGGTACGGGGGAGGAAACGGGGGAAGCGACCG
GCCTGCCTGGTGGGGAAAGCCGCTAGCCGAGGCCGGGGGGTTTTCCGACT
GGCGGCAGTCCCGATTTGCGGCTACATGAGTGGATCCATCGGTAATATAT
GGTGACATGGATCCGATGTCCCCTCCTTTCGAAACACCTTCCGAAGCATT
GCGCGAGCGGTACGGGGGAGGAAACGGGGGAAGCGACCGGCCTGCCTGGT
GGGGAAAGCCGCTAGCCGAGGCCGGGGGGTTTTCCGACTGGCGGCAGTCC
CGATTTGCGGCTACATGA
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