mRNA_H-canaliculatus_F_contig12914.2431.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12914.2431.1
Unique NamemRNA_H-canaliculatus_F_contig12914.2431.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12914.2431.1 vs. uniprot
Match: D8LQ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ96_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.230e-20
Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    7 DISQSEREHQLRRMKMLIARVCGERDRALMFRGWSRLCLHAASLSAAEGASAAATALXXXXXXXXXEKEXQA 222
            D  +  REHQLRR+KMLIARVCGERDRAL+FRGWSRLCLHAASLSAAEG SAAATA          EKE +A
Sbjct: 2063 DTEEVVREHQLRRLKMLIARVCGERDRALVFRGWSRLCLHAASLSAAEGGSAAATAAARAARAEAMEKEAKA 2134
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BLAST of mRNA_H-canaliculatus_F_contig12914.2431.1 vs. uniprot
Match: A0A6H5KKN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.100e-17
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    7 DISQSEREHQLRRMKMLIARVCGERDRALMFRGWSRLCLHAASLSAAEGASAAATALXXXXXXXXXEKEXQATTEKAEAW 246
            D  +  REHQL R+KML+ RVC E+DRAL+FRGWSRLCLHAASLSAAEGA+AA+T  XXXXXX   EKE +A  +    W
Sbjct: 2610 DTEKMAREHQLHRLKMLVVRVCHEKDRALIFRGWSRLCLHAASLSAAEGAAAASTXXXXXXXXEAMEKEAKAAADXXXXW 2689
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12914.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ96_ECTSI2.230e-2072.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN4_9PHAE2.100e-1765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12914contigH-canaliculatus_F_contig12914:3..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.7362294-CDS-H-canaliculatus_F_contig12914:2..591622929022.7362294-CDS-H-canaliculatus_F_contig12914:2..59Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12914 3..59 +
1696845651.0119348-CDS-H-canaliculatus_F_contig12914:2..591696845651.0119348-CDS-H-canaliculatus_F_contig12914:2..59Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12914 3..59 +
1622929022.7573657-CDS-H-canaliculatus_F_contig12914:320..5421622929022.7573657-CDS-H-canaliculatus_F_contig12914:320..542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12914 321..542 +
1696845651.019646-CDS-H-canaliculatus_F_contig12914:320..5421696845651.019646-CDS-H-canaliculatus_F_contig12914:320..542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12914 321..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12914.2431.1prot_H-canaliculatus_F_contig12914.2431.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12914 3..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12914.2431.1

>prot_H-canaliculatus_F_contig12914.2431.1 ID=prot_H-canaliculatus_F_contig12914.2431.1|Name=mRNA_H-canaliculatus_F_contig12914.2431.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
EEDISQSEREHQLRRMKMLIARVCGERDRALMFRGWSRLCLHAASLSAAE
GASAAATALARAARAEAMEKEAQATTEKAEAWGKAAAASAEVA
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mRNA from alignment at H-canaliculatus_F_contig12914:3..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12914.2431.1 ID=mRNA_H-canaliculatus_F_contig12914.2431.1|Name=mRNA_H-canaliculatus_F_contig12914.2431.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12914:3..542+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGAGGACATATCACAGTCGGAGCGGGAGCACCAGCTACGCCGGATGAA
GATGCTGGTGACTAATCCTCATGAACAAAGACAAGAACCCGCCACAAATG
GATTCTCGAATAAGGTCATGACCGGTACCTCGCCCACCTTCACGCCGGAA
CGACAAAGTGGACATTGTTGGATCCTAGATCTCCGTTGTACAGCGAGGGC
TCTCATCTCTTACCCTCACCTTCTGCAAGCTCGAAGCACCCTGTCATCAC
GACGGATGATCCCACTAGTACACCCGTCTTCATCGCACCCCACCCCACTT
ATTTGCGTATCCGTCCAGATCGCGCGTGTGTGCGGCGAGCGAGACAGGGC
CCTCATGTTCCGCGGGTGGAGCCGCCTATGCTTGCATGCTGCATCGCTCT
CCGCCGCCGAGGGAGCCTCAGCAGCAGCAACTGCGCTCGCTAGAGCTGCG
CGGGCGGAGGCCATGGAGAAGGAGGCACAAGCGACCACCGAGAAGGCCGA
GGCGTGGGGCAAAGCGGCAGCCGCGAGCGCGGAGGTGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12914:3..542+

>mRNA_H-canaliculatus_F_contig12914.2431.1 ID=mRNA_H-canaliculatus_F_contig12914.2431.1|Name=mRNA_H-canaliculatus_F_contig12914.2431.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12914:3..542+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGAGGACATATCACAGTCGGAGCGGGAGCACCAGCTACGCCGGATGAA
GATGCTGGAGGAGGACATATCACAGTCGGAGCGGGAGCACCAGCTACGCC
GGATGAAGATGCTGATCGCGCGTGTGTGCGGCGAGCGAGACAGGGCCCTC
ATGTTCCGCGGGTGGAGCCGCCTATGCTTGCATGCTGCATCGCTCTCCGC
CGCCGAGGGAGCCTCAGCAGCAGCAACTGCGCTCGCTAGAGCTGCGCGGG
CGGAGGCCATGGAGAAGGAGGCACAAGCGACCACCGAGAAGGCCGAGGCG
TGGGGCAAAGCGGCAGCCGCGAGCGCGGAGGTGGCGATCGCGCGTGTGTG
CGGCGAGCGAGACAGGGCCCTCATGTTCCGCGGGTGGAGCCGCCTATGCT
TGCATGCTGCATCGCTCTCCGCCGCCGAGGGAGCCTCAGCAGCAGCAACT
GCGCTCGCTAGAGCTGCGCGGGCGGAGGCCATGGAGAAGGAGGCACAAGC
GACCACCGAGAAGGCCGAGGCGTGGGGCAAAGCGGCAGCCGCGAGCGCGG
AGGTGGCG
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