mRNA_H-canaliculatus_F_contig12911.2429.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12911.2429.1
Unique NamemRNA_H-canaliculatus_F_contig12911.2429.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12911.2429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12911contigH-canaliculatus_F_contig12911:2339..2972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.527126-CDS-H-canaliculatus_F_contig12911:2338..23771622929022.527126-CDS-H-canaliculatus_F_contig12911:2338..2377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12911 2339..2377 -
1696845650.9328358-CDS-H-canaliculatus_F_contig12911:2338..23771696845650.9328358-CDS-H-canaliculatus_F_contig12911:2338..2377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12911 2339..2377 -
1622929022.545244-CDS-H-canaliculatus_F_contig12911:2717..29721622929022.545244-CDS-H-canaliculatus_F_contig12911:2717..2972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12911 2718..2972 -
1696845650.94462-CDS-H-canaliculatus_F_contig12911:2717..29721696845650.94462-CDS-H-canaliculatus_F_contig12911:2717..2972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12911 2718..2972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12911.2429.1prot_H-canaliculatus_F_contig12911.2429.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12911 2339..2972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12911.2429.1

>prot_H-canaliculatus_F_contig12911.2429.1 ID=prot_H-canaliculatus_F_contig12911.2429.1|Name=mRNA_H-canaliculatus_F_contig12911.2429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MTLPTGRRASIRNRIAKAVATLEPSLGTSADEAKQLVERLIAGVTDAKAS
AAVSAAILKNSATFVNASKDAGATAVTTSLNEVLKKEGAKLVAHGSTL
back to top

mRNA from alignment at H-canaliculatus_F_contig12911:2339..2972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12911.2429.1 ID=mRNA_H-canaliculatus_F_contig12911.2429.1|Name=mRNA_H-canaliculatus_F_contig12911.2429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12911:2339..2972- (Hapterophycus canaliculatus Oshoro5f female)
ATGACATTGCCAACCGGCAGGAGGGCCTCGATCCGCAACCGCATCGCGAA
AGCGGTGGCTACTCTAGAGCCATCTCTCGGGACGTCAGCTGACGAAGCAA
AACAGCTGGTGGAAAGGCTGATCGCGGGAGTCACGGATGCGAAGGCGTCA
GCGGCTGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTGAACGC
TTCCAAGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGAGGTCC
TGAAGGTTGGTCACTGGCGTGTCCGTTGGATAACACGAAATACCCACTCC
TGCAATGCGGTTTTCACCGTCCACGAGATTCGAGCGCTGTTCGACGCCAC
CCTTCTCGTCATGCCGAAGAGCCGTCATGTACCACAATCTTTAGTCTCTT
GTCCCGGTTTGTACCTGACGCCATCCCAAGAGGGGTTCGGTGGCCCACTG
TCGGGGTAGTTGTCCGTTCCTTGATCCTTCGAAGGCGAAAAGTGTTCTCA
TATACAACTAGCCTTTGACCCGTGAGCGCGCATTCGCAGGGGAAAGATGA
ACATTTGCCTGGTTGTCGCCCGCCGTGACACCTTTCGCGCTGCAGAAAGA
GGGCGCCAAGCTCGTCGCACACGGGTCCACACTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12911:2339..2972-

>mRNA_H-canaliculatus_F_contig12911.2429.1 ID=mRNA_H-canaliculatus_F_contig12911.2429.1|Name=mRNA_H-canaliculatus_F_contig12911.2429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12911:2339..2972- (Hapterophycus canaliculatus Oshoro5f female)
ATGACATTGCCAACCGGCAGGAGGGCCTCGATCCGCAACCGCATCGCGAA
AGCGGTGGCTACTCTAGAGCCATCTCTCGGGACGTCAGCTGACGAAGCAA
AACAGCTGGTGGAAAGGCTGATCGCGGGAGTCACGGATGCGAAGGCGTCA
GCGGCTGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTGAACGC
TTCCAAGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGAGGTCC
TGAAGATGACATTGCCAACCGGCAGGAGGGCCTCGATCCGCAACCGCATC
GCGAAAGCGGTGGCTACTCTAGAGCCATCTCTCGGGACGTCAGCTGACGA
AGCAAAACAGCTGGTGGAAAGGCTGATCGCGGGAGTCACGGATGCGAAGG
CGTCAGCGGCTGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTG
AACGCTTCCAAGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGA
GGTCCTGAAGAAAGAGGGCGCCAAGCTCGTCGCACACGGGTCCACACTCA
AAGAGGGCGCCAAGCTCGTCGCACACGGGTCCACACTC
back to top