mRNA_H-canaliculatus_F_contig1291.2428.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1291.2428.1 vs. uniprot
Match: A0A6H5K2Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Q9_9PHAE) HSP 1 Score: 406 bits (1044), Expect = 1.510e-129 Identity = 277/630 (43.97%), Postives = 348/630 (55.24%), Query Frame = 1
Query: 1 MSRRIDPLCLARVPRGLTVEQPRPGQAGQEKLGGIVSRSFSIETSDMMQVFYTRRHVRVHGRNRKPWSSLYMDHRKTVNVSETGNSKLRSQASSSNHHAYLRRMRMMIKLSRTSAPREDNIHPFCRWKAHVWERMLRCDFCLRVVSSGSTRMECVICNVVVHTGCLRHANRAANGPRDGGLLQPSDFSGGV------------------IIFDSGNEDTAERGGVLAGGEGSGCDGAGWSPEHEEATDQHPRKWVCSHCTKEHYSSIKEQGTAVEARK--RRDRSRFILSKGGFRAGPGDPEYELAQHQSLLHGVTFLQARWRGLRARRENEALNHNHFRAWSLDVLGLDGLPPSTRGRDVRKVEDTASACCGPKANRPMGT---CLLQSRYRVVVTVIQDMAPVGIEALAHPVQLFRFDTPTLPASMAATPAAPMTLVAAAATGDATIPAALLSNGGGSSNNKGKLSSILSPLSALTGRSCAGTSLEFNSEMFVPGTKPWTTAVFTVVRQVCKPQTSRRK---KGARARASHGRKPQENNEDDGAGAAGAVAPSG--TFVGQAFAHLKADLFRGTSRSLSLALRPQHFPVGNLQITTPDHLPEGVTIRARVRPLSHVTSKCGYIHVSLS 1806
M RR+DPL L P L EQP+P ++ +L ++SRS S MMQ FY R+H+RVHG NR+PWSSLY D R+T N+S + R + + + YLRRMRMM+K S + PRE+ IHPF WK H+WERM RCDFCLRVVSSG TR+ C+ C++V H GCL +A A +GG P+D V I + G DTA R S C KW K++ TAV A D+SR KGG+ D E Q +++L G+TF+QARWRG RARR+ +AL H+HFRAW+L+V+G+DGL + R VR + ++ G ++ T CL Q +Y+VVVTVIQDMAPVGIE+ A PVQLFRFDTP L AT A T+ A AA A IPAA+ NKG + L+P S + G + S+EFNS++FVPGTKPW TAVFTVVRQ +T + +G R RA+ VGQA AHL DL RGTSR SL L Q+FPV LQ+ TPDHLPEGVTIRAR+ P S + SKCGYIHV+ S
Sbjct: 82 MRRRVDPLSLVSRPGVLPTEQPQPSRS---ELARVLSRSLRSNPSAMMQAFYARQHIRVHGHNRRPWSSLYTD-RRTKNISLKPDKPQRGISVA--NPIYLRRMRMMMKASEPTKPREEKIHPFRPWKPHIWERMFRCDFCLRVVSSGITRVPCIFCDIVAHIGCLHNAVLEA----EGGTRSPADCGTVVSWAEVLMMPAMPTVPKLDISLERGCADTARR---------STC-----------------CKW-------------KKRATAVMAAACDTSDQSRLRNWKGGYSRDFDDDEEYDPQQRTVLDGITFVQARWRGTRARRKQDALKHSHFRAWTLEVVGVDGL--TITSRTVRHFQALSTGNNGKTSSASDATWHLCLHQYQYQVVVTVIQDMAPVGIESSAPPVQLFRFDTPAL---SVATTATADTVEATAAAVAAGIPAAM---------NKGG-ARPLTPRSMIGGSATEQASVEFNSKIFVPGTKPWVTAVFTVVRQSIPHETKEKASPTQGKRGRAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLVGQAHAHLNTDLCRGTSRHFSLPLSSQYFPVDTLQVATPDHLPEGVTIRARIGPFSDIASKCGYIHVTFS 647
BLAST of mRNA_H-canaliculatus_F_contig1291.2428.1 vs. uniprot
Match: D7G162_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G162_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 5.120e-19 Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 1
Query: 949 NHFRAWSLDVLGLDGLPPSTRGRDVRKVEDTASACCGPKANRPMGT---CLLQSRYRVVVTVIQDMAPVGIEALAHPVQLFRFDTPTLPASMAATPAAPMTLVAAAATGDATIPAALLSNGGGSSNNKGKLSSILSPLSALTGRSCAGTSLEFNSEM 1410
+HFRAW+L+V+G+DGL + R VR + ++ G ++ T CL Q +YRVVVTVIQDMAPVGIE+ A PVQLFRFDTP L AAT A + AA A A IPAA+ NKG + L+P S + G + S++F+SE+
Sbjct: 19 SHFRAWTLEVVGVDGL--TIASRTVRNPQALSTGNNGKTSSASDTTWHPCLHQYQYRVVVTVIQDMAPVGIESSAPPVQLFRFDTPAL---SAATTATADDVEAAGAAAAAGIPAAM---------NKGG-ARPLTPRSMIGGSATEQASVKFSSEV 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1291.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1291.2428.1 >prot_H-canaliculatus_F_contig1291.2428.1 ID=prot_H-canaliculatus_F_contig1291.2428.1|Name=mRNA_H-canaliculatus_F_contig1291.2428.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=604bp MSRRIDPLCLARVPRGLTVEQPRPGQAGQEKLGGIVSRSFSIETSDMMQVback to top mRNA from alignment at H-canaliculatus_F_contig1291:2124..11307+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1291.2428.1 ID=mRNA_H-canaliculatus_F_contig1291.2428.1|Name=mRNA_H-canaliculatus_F_contig1291.2428.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9184bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1291:2124..11307+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1291:2124..11307+ >mRNA_H-canaliculatus_F_contig1291.2428.1 ID=mRNA_H-canaliculatus_F_contig1291.2428.1|Name=mRNA_H-canaliculatus_F_contig1291.2428.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1291:2124..11307+ (Hapterophycus canaliculatus Oshoro5f female)back to top |