mRNA_H-canaliculatus_F_contig12909.2427.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12909.2427.1
Unique NamemRNA_H-canaliculatus_F_contig12909.2427.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12909.2427.1 vs. uniprot
Match: D7FJF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF0_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 7.450e-53
Identity = 92/146 (63.01%), Postives = 115/146 (78.77%), Query Frame = 1 
Query:    1 KVSDGVAFAVLAFAIIGLVCFMTGPYASCAVAMAVLFEDVPVIVTTILVQAYLAGADVSEWHAVAIVSIVFSMFAMHQKLMDLGLVRSVQDVLNPRPEADLVAEIGRCYWWVVFFRSVAMVAITVMAAWLVATFIIFFAPEPADRR 438
             V DGVAFAVL FAI+GL+ F++GP++    A+++ FED P+I+ T  +QAYLAGADV EWHAVAIVS VFSMFAM QK+M LGLV+S++D+LNPR E +  AEIG CYWWVVF RS+A VA TV+ AW ++ FIIFFAP+P   R
Sbjct:   41 NVPDGVAFAVLGFAIVGLMSFLSGPFSDIGTAVSISFEDFPIIIITTAIQAYLAGADVREWHAVAIVSYVFSMFAMQQKVMKLGLVKSIRDILNPRAEEERQAEIGPCYWWVVFVRSLAAVAFTVLLAWALSAFIIFFAPDPPGER 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12909.2427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJF0_ECTSI7.450e-5363.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12909contigH-canaliculatus_F_contig12909:925..3337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006100.1
Exons2
Model size1619
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12909.2427.1prot_H-canaliculatus_F_contig12909.2427.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12909 988..2159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.2022393-UTR-H-canaliculatus_F_contig12909:924..9871622929022.2022393-UTR-H-canaliculatus_F_contig12909:924..987Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12909 925..987 +
1696845650.7318554-UTR-H-canaliculatus_F_contig12909:924..9871696845650.7318554-UTR-H-canaliculatus_F_contig12909:924..987Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12909 925..987 +
1622929022.2421494-UTR-H-canaliculatus_F_contig12909:2159..33371622929022.2421494-UTR-H-canaliculatus_F_contig12909:2159..3337Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12909 2160..3337 +
1696845650.76232-UTR-H-canaliculatus_F_contig12909:2159..33371696845650.76232-UTR-H-canaliculatus_F_contig12909:2159..3337Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12909 2160..3337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.217715-CDS-H-canaliculatus_F_contig12909:987..10381622929022.217715-CDS-H-canaliculatus_F_contig12909:987..1038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12909 988..1038 +
1696845650.7455916-CDS-H-canaliculatus_F_contig12909:987..10381696845650.7455916-CDS-H-canaliculatus_F_contig12909:987..1038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12909 988..1038 +
1622929022.2277968-CDS-H-canaliculatus_F_contig12909:1832..21591622929022.2277968-CDS-H-canaliculatus_F_contig12909:1832..2159Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12909 1833..2159 +
1696845650.7542167-CDS-H-canaliculatus_F_contig12909:1832..21591696845650.7542167-CDS-H-canaliculatus_F_contig12909:1832..2159Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12909 1833..2159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12909.2427.1

>prot_H-canaliculatus_F_contig12909.2427.1 ID=prot_H-canaliculatus_F_contig12909.2427.1|Name=mRNA_H-canaliculatus_F_contig12909.2427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
MTGPYASCAVAMAVLFEDVPVIVTTILVQAYLAGADVSEWHAVAIVSIVF
SMFAMHQKLMDLGLVRSVQDVLNPRPEADLVAEIGRCYWWVVFFRSVAMV
AITVMAAWLVATFIIFFAPEPADRR*
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mRNA from alignment at H-canaliculatus_F_contig12909:925..3337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12909.2427.1 ID=mRNA_H-canaliculatus_F_contig12909.2427.1|Name=mRNA_H-canaliculatus_F_contig12909.2427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2413bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12909:925..3337+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGTCCGATGGAGTGGCTTTCGCGGTCCTGGCGTTTGCGATCATCGG
GCTGGTGTGCTTCATGACCGGGCCGTACGCCAGCTGCGCTGTGGCCATGG
CGGTGTTGTTCGAGGTAAGTCTAACCGCAGCGATGATTACATTCGAGAGC
CCATCTGTCGCACCGCTGACGCTGCCCGTTTTCACTTCGTATACGAGAGG
CAAATTTGTGTGACAGTCTCCCAAAGTCACCGGCGCTGAAAGTCGGCACA
GCACTGCGACGGGACGTGACTGATAGGCAAGCTGATGTACGGTGGAGTGT
TGCCCAGCTCACAGAAGCGGCGGCTTGCTGTGCTCTTCCATCTTGTGCGA
CGTCGGGGGTGGCGAACCCATCACACGGCAGCTGGGTTGCCGCTTTTGCA
ATGGAGATCTCGTGCGGGGATCAGCGGCGGAAAAGAGGGAGCGACGCTAC
CACTGCTCTTGCTCTGTCTTCATAATTGTACAGCGTGAAAGATGTGGTGG
CTTCTGCCTTATTTCGGCAAAAACGTGGGAAGATGCATTTGCAAATAGCA
CTAGTGGATATTTTCCTACCGACGAGTGGTGTCATGATCAGGCCATCACA
CGAACTTGTCTTGACAAGATTTCATCGGTGATCCGGCGGGTGTGTTTGAG
TGATGTATCCCCTCCATCCTCAGACTTTTCGCTACAGAACGTTTCGAGCG
AGCTCGTGTACCGACAGATTGCTGGGAATGTTCCACGGAGGGGCGCTAGC
TAGACAGCCAACTCACGTTGAGCAGAATTCACCCACCCGCACGTCTCTCC
TCCTGAACAGCTTAATCCAACATATTTCCGGATAGTTTCCAATTCAACCA
GACCTTGTTTGATTTCCATCCACCGCCCGCCGCCTTCCCTCCGCCCCCGC
ACGCACAGGACGTCCCGGTGATTGTCACTACCATCCTGGTCCAGGCGTAC
CTCGCCGGCGCAGATGTGAGCGAATGGCACGCTGTCGCGATAGTCAGCAT
CGTTTTCTCCATGTTCGCCATGCATCAGAAGCTCATGGACCTGGGCCTCG
TAAGGAGCGTCCAAGACGTCTTGAACCCCCGACCGGAGGCGGACCTGGTT
GCGGAGATAGGTCGCTGCTACTGGTGGGTGGTCTTCTTCCGGTCTGTGGC
CATGGTTGCCATTACCGTAATGGCCGCATGGCTGGTAGCGACCTTCATCA
TTTTTTTCGCCCCGGAACCGGCGGATAGACGATAGATGAGTACGCATTAT
TTTAGGCTCGACGGTCTAGAGGACAAGGCGAACGCTGGGACGATTTCTGA
AGTCTTCGCAGGGTGGTCAGCTAGCTGCTCACGAATGGTTTCCGGCTGTC
CGCCCGACTGATTTCATGGGCGATGGTAATGGTGTGTCAGTTGGAGCTGC
AAGGCACGTCTTCGCCATACGGATGCTGGCTTCACACCACTTTCCAGTTG
GCGGATTTTATTTTATGTGCTTTCCAACCTGAAATTGTCTTCGAGCAGGT
ACAGAAAGCGATATTTGCCCACGGGCGTGGCCTGCTCTCCTATTCATGAG
CAACGACGCGATATCATCGCTCTTGACGCAGACATCGCTGTGTGTGGTGT
GTGGTACTTGTAGACTGCGGCAGGCACCGCGTGCGCGAGAAAGTTGGCTT
TGTTTTGTCCATTTGTTGTTGGACCGATCAAACCTAATCCGCTCGTATAA
ACCAGTGGCGTCTAAAGGGATCCGCGTTGTAAGCTCCTCGGGATTCACCT
CAGACTTTTTTTTCCTACATGGAGTGAAGAAGAAGACGGAGCAGGCTACA
AGTAGTTACTTTGTGTCTGGCGCATCTGGTCGTTGGATGCATGTGAGCGA
CAATTAGCGCTCCCATTTGGAGTCGTTATTATTGCGCGCGCGAGTGCCGC
TCCCCATTAATTGTGTGAGAGCGCCTTCGTTGTTAATTCCGGGAGGTGCA
GACGTTGAAGATGGTCGGACCGTCTTTTTGGTGTACAATAATATTCTATG
AAAACTTGTGTTATGGATTTGTGTTTTACGCATCTGCTTCGATCTAATTA
TACACGTCTGCCACGGCCGTTGTGCGTGAAAGAGCGAGAATGAAAGGGGA
AACCATGGGATACAAAACATGGTGTGTAACGGTCAGGAACGAACGATGTT
TGGCGTTTCTTGTTTCGATTCCACCGCTTCTACTCCCACGTTCGACTCGC
ACGTTCGTCCCGACGGTACGTTTTCGTGACCACGTGTGGAATGGAATGTG
CTTGACCCGGGTGGATATTATTCTGAAAGTAAACCTGCTGTGGCAGCACC
CAGCATCCAGACGTTATGCGTACACCTTTAGCGTGTCATGAAGGAGCGAT
TTCTCATGCACGCTTTTGTTGTGAACCTGAAGGGCCGGCCGGGTGTATTA
CGTTTGGAGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12909:925..3337+

>mRNA_H-canaliculatus_F_contig12909.2427.1 ID=mRNA_H-canaliculatus_F_contig12909.2427.1|Name=mRNA_H-canaliculatus_F_contig12909.2427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12909:925..3337+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCGGGCCGTACGCCAGCTGCGCTGTGGCCATGGCGGTGTTGTTCGA
GATGACCGGGCCGTACGCCAGCTGCGCTGTGGCCATGGCGGTGTTGTTCG
AGGACGTCCCGGTGATTGTCACTACCATCCTGGTCCAGGCGTACCTCGCC
GGCGCAGATGTGAGCGAATGGCACGCTGTCGCGATAGTCAGCATCGTTTT
CTCCATGTTCGCCATGCATCAGAAGCTCATGGACCTGGGCCTCGTAAGGA
GCGTCCAAGACGTCTTGAACCCCCGACCGGAGGCGGACCTGGTTGCGGAG
ATAGGTCGCTGCTACTGGTGGGTGGTCTTCTTCCGGTCTGTGGCCATGGT
TGCCATTACCGTAATGGCCGCATGGCTGGTAGCGACCTTCATCATTTTTT
TCGCCCCGGAACCGGCGGATAGACGATAGGACGTCCCGGTGATTGTCACT
ACCATCCTGGTCCAGGCGTACCTCGCCGGCGCAGATGTGAGCGAATGGCA
CGCTGTCGCGATAGTCAGCATCGTTTTCTCCATGTTCGCCATGCATCAGA
AGCTCATGGACCTGGGCCTCGTAAGGAGCGTCCAAGACGTCTTGAACCCC
CGACCGGAGGCGGACCTGGTTGCGGAGATAGGTCGCTGCTACTGGTGGGT
GGTCTTCTTCCGGTCTGTGGCCATGGTTGCCATTACCGTAATGGCCGCAT
GGCTGGTAGCGACCTTCATCATTTTTTTCGCCCCGGAACCGGCGGATAGA
CGATAG
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