mRNA_H-canaliculatus_F_contig12908.2426.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12908.2426.1
Unique NamemRNA_H-canaliculatus_F_contig12908.2426.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12908.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12908contigH-canaliculatus_F_contig12908:2..2271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size833
Cds size831
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12908.2426.1prot_H-canaliculatus_F_contig12908.2426.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12908 3..2271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.1163692-CDS-H-canaliculatus_F_contig12908:2..1251622929022.1163692-CDS-H-canaliculatus_F_contig12908:2..125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 3..125 -
1696845650.695332-CDS-H-canaliculatus_F_contig12908:2..1251696845650.695332-CDS-H-canaliculatus_F_contig12908:2..125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 3..125 -
1622929022.1354296-CDS-H-canaliculatus_F_contig12908:170..6941622929022.1354296-CDS-H-canaliculatus_F_contig12908:170..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 171..694 -
1696845650.7049818-CDS-H-canaliculatus_F_contig12908:170..6941696845650.7049818-CDS-H-canaliculatus_F_contig12908:170..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 171..694 -
1622929022.1521966-CDS-H-canaliculatus_F_contig12908:2087..22711622929022.1521966-CDS-H-canaliculatus_F_contig12908:2087..2271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 2088..2271 -
1696845650.7212088-CDS-H-canaliculatus_F_contig12908:2087..22711696845650.7212088-CDS-H-canaliculatus_F_contig12908:2087..2271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12908 2088..2271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12908.2426.1

>prot_H-canaliculatus_F_contig12908.2426.1 ID=prot_H-canaliculatus_F_contig12908.2426.1|Name=mRNA_H-canaliculatus_F_contig12908.2426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=277bp
AATNGGSNGGTVAEMVPPRRAKWKRLFPVDVGVPAATSMAAAGAPAGSRS
NGKRSVATAAGGTRSGSSPAPGGRTFVSPTGSAPAPMATSASPWSKASAV
VRASGAPTGTKPLIIQASAAPAAGGAFAASVHHVAPRSAGARDMTAMEEE
NGEKATAAPSHPAAWAPTAMEEEEGEFTKGKTPGSVAQKVAAPTLPRAGV
SGQAETHRQTGGASFPAMSKPPSIAPAVPRDYAASKVFGGAMEVDDPPRY
HPLPSAVDPTSSGKSAALTAPAKTAIG
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mRNA from alignment at H-canaliculatus_F_contig12908:2..2271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12908.2426.1 ID=mRNA_H-canaliculatus_F_contig12908.2426.1|Name=mRNA_H-canaliculatus_F_contig12908.2426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12908:2..2271- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAACGAACGGAGGGAGCAACGGGGGGACGGTGGCGGAGATGGTTCC
ACCCAGGAGGGCTAAGTGGAAGAGGCTCTTTCCCGTCGATGTTGGCGTAC
CTGCGGCGACGTCAATGGCGGCAGCAGGGGCACCTGCCGGCAGTCGGAGC
AACGGGAAGAGGAGCGTGGCGACGGCAGCCGGTGGTAGGTCGTTCGTCGC
AAGCTATAGTTTTACCGCAGCACACGAAGACGTCGTCCTGTGTAATCAGC
GTTTAAAGTTGTCGTTTAATTGAACTCCTGGATTTGGTGGTTGTGATTCC
GTATACTTGAACGTGGACAGTGCGCGCGTGTCTCGAGCGCACGTGTCCTC
CAAACGTGTGGTAGATGCTCGTCGGAGACGCAACACAGGTGTGGTGAATG
TCATCTTCGATTCGCAATTCTGACCGGGGCCGTCTTGGTTCGGATTCGTC
GGTCTTTGCCAGACACACGTGTAGAGCAAGTGCCGAGCTTCTAGTCACTG
GGGCACCACTCGTCGTGAAACTGTCTTCGTCGGTGCAGAACCCGTAAAAG
TGCGAGAGAACGCACAGGCCGAAGTTATCGCGCATCCCATGTCGGGGTTA
CCGCTTTAGGGGGTTCGGGAAGAAAACAGGTCAAAGTGTTCTTAATCGGC
TTTCGCACAGGGGTCAGAGTTGTCGCATAGTGTGCGAAAACCACGGCCAA
ATCCCTCTGGAAGACGGGGTGCTGCATGGTTGGCGAGTCGGTCCAGAGAC
ACACTTTGGTCTGCAACGTTTTGTGTGTTTGTGCCGCCATCTTTCATCGA
GCCTCCGCTGCCCAGTGCACTACAGCGAAATGGTACTGTTTTGTGCACCT
GTAGTGCGTCCGTGTACGCCTTTGATCGTGTCATACTCGAGTATCTTGTT
TTCACCCGGAGGCACACAGGTGGAAGACCAGCACTGTAATCCTTTGTTTC
TTCCTTCTTTCGACAGACATCAGCAATCCAATCAATCACAACAAGCTTCA
CGTGCCGCACTTCATCGGTAGAGTATCTAAATTTCCGCGAGTATACATCG
CCGCCTCGTCGGCGTTATAAATTTCGTCGCGTTTTTGTGAGTGCACCTGT
GATCAGAGCGTGCGTGATATGTCGTGCTGTGCTTGATTGCAGTGTGTGAA
TCGATCGCAGGTCCTCTCAGTACCGGCACCTGTTGTATCCTACTGTTGAT
TTTCTTTCGCTCACATCGGAGATATCTCATAGAGGTGTGCGATTCAAACA
ACGGTGTCACCAATTTGATTTGTTCAGGGCCATGCATGTCGGGATTAACG
TACGTGAGTGAGGGCTGAAAAAACAACAACAAAAAAATGAATTTATTTCC
CGCACAGGGGCCGGAGCTGTAGCACATGTCGCATGCGTCGTATTGGGAGT
GCGGAAAAACAACAGCTCGAAGTGGTTTCAAAAGCGGATCGCACCCTGTG
CGTTCTCTCGCACTTTTACGGTATGCCTCGTCGATCGCTGTCGCCCCGTG
CTCGAGCTTGCAGCGACCCTAACGCGCCCCATCTGCCCACGTCTCTTCGA
AACGCGCTCTCGACCCACATTCAGCAGGTACGCGGTCCGGTTCGAGCCCT
GCCCCCGGTGGCCGGACATTCGTCAGCCCGACGGGAAGCGCACCGGCCCC
GATGGCGACATCTGCGTCCCCGTGGTCCAAGGCATCTGCCGTCGTACGAG
CGAGCGGAGCTCCAACGGGGACGAAGCCTCTCATCATCCAAGCCTCAGCT
GCGCCGGCGGCGGGAGGAGCGTTTGCGGCGTCCGTTCACCATGTAGCGCC
CCGCTCCGCGGGCGCAAGGGACATGACGGCGATGGAGGAGGAGAACGGAG
AGAAAGCGACGGCCGCTCCCTCCCACCCCGCTGCGTGGGCGCCGACGGCA
ATGGAGGAGGAGGAGGGGGAATTCACGAAGGGGAAGACCCCGGGCTCGGT
TGCGCAAAAGGTTGCGGCACCCACACTTCCCCGGGCTGGTGTATCTGGTC
AGGCTGAGACACACCGACAGACCGGTGGGGCGTCATTCCCAGCGATGTCG
AAACCTCCCTCTATCGCCCCGGCCGTTCCCAGGGACTACGCGGCTTCGAA
GGTCTTCGGCGGAGCGGCCGTTCCCAGGGACTACGCGGCTTCGAAGGTCT
TCGGCGGAGCCATGGAGGTGGACGATCCTCCGAGATACCATCCGCTGCCA
TCTGCCGTGGACCCGACTTCTTCGGGGAAATCTGCAGCGCTTACAGCTCC
GGCCAAGACCGCCATCGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12908:2..2271-

>mRNA_H-canaliculatus_F_contig12908.2426.1 ID=mRNA_H-canaliculatus_F_contig12908.2426.1|Name=mRNA_H-canaliculatus_F_contig12908.2426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12908:2..2271- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAACGAACGGAGGGAGCAACGGGGGGACGGTGGCGGAGATGGTTCC
ACCCAGGAGGGCTAAGTGGAAGAGGCTCTTTCCCGTCGATGTTGGCGTAC
CTGCGGCGACGTCAATGGCGGCAGCAGGGGCACCTGCCGGCAGTCGGAGC
AACGGGAAGAGGAGCGTGGCGACGGCAGCCGGTGGCAGCAACGAACGGAG
GGAGCAACGGGGGGACGGTGGCGGAGATGGTTCCACCCAGGAGGGCTAAG
TGGAAGAGGCTCTTTCCCGTCGATGTTGGCGTACCTGCGGCGACGTCAAT
GGCGGCAGCAGGGGCACCTGCCGGCAGTCGGAGCAACGGGAAGAGGAGCG
TGGCGACGGCAGCCGGTGGTACGCGGTCCGGTTCGAGCCCTGCCCCCGGT
GGCCGGACATTCGTCAGCCCGACGGGAAGCGCACCGGCCCCGATGGCGAC
ATCTGCGTCCCCGTGGTCCAAGGCATCTGCCGTCGTACGAGCGAGCGGAG
CTCCAACGGGGACGAAGCCTCTCATCATCCAAGCCTCAGCTGCGCCGGCG
GCGGGAGGAGCGTTTGCGGCGTCCGTTCACCATGTAGCGCCCCGCTCCGC
GGGCGCAAGGGACATGACGGCGATGGAGGAGGAGAACGGAGAGAAAGCGA
CGGCCGCTCCCTCCCACCCCGCTGCGTGGGCGCCGACGGCAATGGAGGAG
GAGGAGGGGGAATTCACGAAGGGGAAGACCCCGGGCTCGGTTGCGCAAAA
GGTTGCGGCACCCACACTTCCCCGGGCTGGTGTATCTGGTCAGGCTGAGA
CACACCGACAGACCGGTGGGGCGTCATTCCCAGCGATGTCGAAACCTCCC
TCTATCGCCCCGGCCGTTCCCAGGGACTACGCGGCTTCGAAGGTACGCGG
TCCGGTTCGAGCCCTGCCCCCGGTGGCCGGACATTCGTCAGCCCGACGGG
AAGCGCACCGGCCCCGATGGCGACATCTGCGTCCCCGTGGTCCAAGGCAT
CTGCCGTCGTACGAGCGAGCGGAGCTCCAACGGGGACGAAGCCTCTCATC
ATCCAAGCCTCAGCTGCGCCGGCGGCGGGAGGAGCGTTTGCGGCGTCCGT
TCACCATGTAGCGCCCCGCTCCGCGGGCGCAAGGGACATGACGGCGATGG
AGGAGGAGAACGGAGAGAAAGCGACGGCCGCTCCCTCCCACCCCGCTGCG
TGGGCGCCGACGGCAATGGAGGAGGAGGAGGGGGAATTCACGAAGGGGAA
GACCCCGGGCTCGGTTGCGCAAAAGGTTGCGGCACCCACACTTCCCCGGG
CTGGTGTATCTGGTCAGGCTGAGACACACCGACAGACCGGTGGGGCGTCA
TTCCCAGCGATGTCGAAACCTCCCTCTATCGCCCCGGCCGTTCCCAGGGA
CTACGCGGCTTCGAAGGTCTTCGGCGGAGCCATGGAGGTGGACGATCCTC
CGAGATACCATCCGCTGCCATCTGCCGTGGACCCGACTTCTTCGGGGAAA
TCTGCAGCGCTTACAGCTCCGGCCAAGACCGCCATCGGTGTCTTCGGCGG
AGCCATGGAGGTGGACGATCCTCCGAGATACCATCCGCTGCCATCTGCCG
TGGACCCGACTTCTTCGGGGAAATCTGCAGCGCTTACAGCTCCGGCCAAG
ACCGCCATCGGT
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