mRNA_H-canaliculatus_F_contig12900.2424.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12900.2424.1
Unique NamemRNA_H-canaliculatus_F_contig12900.2424.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12900.2424.1 vs. uniprot
Match: D8LHN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN0_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 7.710e-89
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 1 
Query:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAARIPLARPDEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPAQQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRK 447
            MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGA RIPLAR DEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPA QLSVLSARSRNVLTTGDCPVYKIFLRRTL LLRDTLVEGGMSEERFVEALRK
Sbjct:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLGLLRDTLVEGGMSEERFVEALRK 149
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BLAST of mRNA_H-canaliculatus_F_contig12900.2424.1 vs. uniprot
Match: A0A6H5K7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E8_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 5.960e-80
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 1 
Query:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAARIPLARPDEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPAQQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRK 447
            MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGA RIPLAR DEER+RDALMVLFETEDVTSADICAQVAEMTRVV+VNAGKVLPA QLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRK
Sbjct: 1105 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERIRDALMVLFETEDVTSADICAQVAEMTRVVSVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRK 1253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12900.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN0_ECTSI7.710e-8997.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7E8_9PHAE5.960e-8096.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12900contigH-canaliculatus_F_contig12900:2453..3311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionT-complex 11
Ec32 orthologEc-26_003730.1
Exons2
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.0158603-CDS-H-canaliculatus_F_contig12900:2452..26861622929022.0158603-CDS-H-canaliculatus_F_contig12900:2452..2686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12900 2453..2686 +
1696845650.665545-CDS-H-canaliculatus_F_contig12900:2452..26861696845650.665545-CDS-H-canaliculatus_F_contig12900:2452..2686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12900 2453..2686 +
1622929022.0341518-CDS-H-canaliculatus_F_contig12900:3098..33111622929022.0341518-CDS-H-canaliculatus_F_contig12900:3098..3311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12900 3099..3311 +
1696845650.6739478-CDS-H-canaliculatus_F_contig12900:3098..33111696845650.6739478-CDS-H-canaliculatus_F_contig12900:3098..3311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12900 3099..3311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12900.2424.1prot_H-canaliculatus_F_contig12900.2424.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12900 2453..3311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12900.2424.1

>prot_H-canaliculatus_F_contig12900.2424.1 ID=prot_H-canaliculatus_F_contig12900.2424.1|Name=mRNA_H-canaliculatus_F_contig12900.2424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAARIPLA
RPDEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPAQQLS
VLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRK
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mRNA from alignment at H-canaliculatus_F_contig12900:2453..3311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12900.2424.1 ID=mRNA_H-canaliculatus_F_contig12900.2424.1|Name=mRNA_H-canaliculatus_F_contig12900.2424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=859bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12900:2453..3311+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGGAGGGCGTCGCCGTGCCCGAGACGCTGATGCTGGACCGCTACCG
CCTCGTGGTGATCGCGGCGGCGGCGGAGCAGGCCGCCTACACGGCGTCTC
TGGTGGCGTTCGCCAGGCAGACGCTGGGAGCGGCCCGGATACCGCTGGCG
CGGCCGGATGAGGAGCGCGTCCGGGACGCCCTGATGGTGCTGTTCGAGAC
CGAGGACGTCACCAGCGCCGACATCTGTGCCCAGGTGCTTGTTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTGACACTTTTGTTTT
CGTTTGTTTCTTTTTTCTTTTTGCGTGCGCGGGAGGTGTCGAAGCGGAGG
AGGGAGAACGGCTCGCAGGCAGACAGCGGTGCTTCGCGTGACCCGCCCAG
AGTTTTCAGGAGGCCCGCACGCTTGCTTGTCCCGATATTTTCGTCGGGTT
CTCCTTTTGACTTTGCCAAAATCCTGCCCTCCTTGCCTTGTGGCTTGATG
TGGCTGTCGAGCCTGCTCGATCATACCCCGGTTCGACCGCTCCGCACCCA
CTTCTGGCACGTGGCCGAGGCCGAGCCCGGCCGAACCTTGCCAAACCCAA
CCCAGCCTCACCCAACCGGACCCTGGCCCAAACGTGCCAAACCCAGGTGG
CGGAGATGACGCGCGTGGTCGCCGTGAACGCTGGCAAGGTGCTGCCGGCG
CAGCAGCTGTCCGTCCTGTCGGCGCGGTCCCGCAACGTACTGACGACGGG
TGACTGCCCGGTCTACAAGATCTTCCTTCGACGAACGCTGGCGCTGCTGC
GAGATACGCTGGTGGAGGGCGGCATGTCGGAGGAGCGCTTCGTGGAGGCC
TTGCGCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12900:2453..3311+

>mRNA_H-canaliculatus_F_contig12900.2424.1 ID=mRNA_H-canaliculatus_F_contig12900.2424.1|Name=mRNA_H-canaliculatus_F_contig12900.2424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12900:2453..3311+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGGAGGGCGTCGCCGTGCCCGAGACGCTGATGCTGGACCGCTACCG
CCTCGTGGTGATCGCGGCGGCGGCGGAGCAGGCCGCCTACACGGCGTCTC
TGGTGGCGTTCGCCAGGCAGACGCTGGGAGCGGCCCGGATACCGCTGGCG
CGGCCGGATGAGGAGCGCGTCCGGGACGCCCTGATGGTGCTGTTCGAGAC
CGAGGACGTCACCAGCGCCGACATCTGTGCCCAGATGTTGGAGGGCGTCG
CCGTGCCCGAGACGCTGATGCTGGACCGCTACCGCCTCGTGGTGATCGCG
GCGGCGGCGGAGCAGGCCGCCTACACGGCGTCTCTGGTGGCGTTCGCCAG
GCAGACGCTGGGAGCGGCCCGGATACCGCTGGCGCGGCCGGATGAGGAGC
GCGTCCGGGACGCCCTGATGGTGCTGTTCGAGACCGAGGACGTCACCAGC
GCCGACATCTGTGCCCAGGTGGCGGAGATGACGCGCGTGGTCGCCGTGAA
CGCTGGCAAGGTGCTGCCGGCGCAGCAGCTGTCCGTCCTGTCGGCGCGGT
CCCGCAACGTACTGACGACGGGTGACTGCCCGGTCTACAAGATCTTCCTT
CGACGAACGCTGGCGCTGCTGCGAGATACGCTGGTGGAGGGCGGCATGTC
GGAGGAGCGCTTCGTGGAGGCCTTGCGCAAGGTGGCGGAGATGACGCGCG
TGGTCGCCGTGAACGCTGGCAAGGTGCTGCCGGCGCAGCAGCTGTCCGTC
CTGTCGGCGCGGTCCCGCAACGTACTGACGACGGGTGACTGCCCGGTCTA
CAAGATCTTCCTTCGACGAACGCTGGCGCTGCTGCGAGATACGCTGGTGG
AGGGCGGCATGTCGGAGGAGCGCTTCGTGGAGGCCTTGCGCAAG
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