mRNA_H-canaliculatus_F_contig1290.2422.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1290.2422.1
Unique NamemRNA_H-canaliculatus_F_contig1290.2422.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1290.2422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1290contigH-canaliculatus_F_contig1290:20939..21949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1011
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1290.2422.1prot_H-canaliculatus_F_contig1290.2422.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1290 21049..21600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.8696682-UTR-H-canaliculatus_F_contig1290:20938..210481622929021.8696682-UTR-H-canaliculatus_F_contig1290:20938..21048Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 20939..21048 +
1696845650.6009285-UTR-H-canaliculatus_F_contig1290:20938..210481696845650.6009285-UTR-H-canaliculatus_F_contig1290:20938..21048Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 20939..21048 +
1622929021.8997602-UTR-H-canaliculatus_F_contig1290:21600..219491622929021.8997602-UTR-H-canaliculatus_F_contig1290:21600..21949Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 21601..21949 +
1696845650.6178436-UTR-H-canaliculatus_F_contig1290:21600..219491696845650.6178436-UTR-H-canaliculatus_F_contig1290:21600..21949Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 21601..21949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.8840437-CDS-H-canaliculatus_F_contig1290:21048..216001622929021.8840437-CDS-H-canaliculatus_F_contig1290:21048..21600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1290 21049..21600 +
1696845650.6091719-CDS-H-canaliculatus_F_contig1290:21048..216001696845650.6091719-CDS-H-canaliculatus_F_contig1290:21048..21600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1290 21049..21600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1290.2422.1

>prot_H-canaliculatus_F_contig1290.2422.1 ID=prot_H-canaliculatus_F_contig1290.2422.1|Name=mRNA_H-canaliculatus_F_contig1290.2422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
MRQQISAPNAASLSDPHTLLPSVIFHRGAAVATAPAAVLGAVAATAEEDV
VDGAWGALRAAGSLVVLEGGGRMGRWGSDRDGRNGRCSPCSPDNRLCSRG
YLMYCRNLAIFFLSTTSLRGKGGMFDCGSNAVHLESGSAVPPVARKGEVF
ELPGVVDSGTRMMAARRCRVSRAAVVTAASADR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1290:20939..21949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1290.2422.1 ID=mRNA_H-canaliculatus_F_contig1290.2422.1|Name=mRNA_H-canaliculatus_F_contig1290.2422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1290:20939..21949+ (Hapterophycus canaliculatus Oshoro5f female)
CTGACGAGTACACGATTCAAAACGCAATCCTGCGCGAGGAGCCCGGTGTC
TCACGGAAGGAGGTTGAGGAGATTCTTGGATATGCGTCAGGTGATTAACG
CGAAAAGGAGATGCGTCAACAAATTTCTGCGCCGAACGCTGCGTCGCTGA
GTGACCCACACACGCTTCTGCCCTCAGTGATTTTCCATCGGGGCGCGGCG
GTGGCGACGGCTCCCGCGGCGGTCCTAGGGGCGGTAGCGGCTACAGCGGA
AGAGGACGTGGTAGATGGGGCATGGGGGGCCCTTCGCGCGGCCGGGAGCC
TGGTGGTGCTGGAAGGGGGCGGCCGCATGGGTAGATGGGGCTCGGACAGA
GATGGCCGGAACGGGCGATGCTCTCCATGCTCCCCAGACAACCGCCTTTG
CAGCCGCGGATACCTAATGTACTGCCGAAATCTCGCCATTTTCTTCCTCT
CAACCACCTCGCTTAGGGGAAAAGGGGGGATGTTCGACTGTGGCTCAAAC
GCTGTCCACCTCGAGTCGGGCTCCGCAGTTCCGCCTGTCGCACGAAAAGG
TGAAGTGTTTGAGTTACCAGGCGTTGTCGACTCGGGAACACGTATGATGG
CTGCACGGCGTTGCCGCGTTTCGAGGGCAGCTGTGGTTACTGCGGCCAGT
GCGGACAGATGAAGCGAAATCGCCTGATTTTCCTTCGTGGTGAGGCTGAG
GTCGCTGGCATTGTTTGGCCCTATGCGTACGTTGTCGCCCCTGCATCTTT
TGACGGTTTTAATGGGCACGACGGCGTGAGCTGGGAGGATGGCTGGGGGG
ACCATGTGCCGTATCAGCAGCCGCAGCAAGGGGGCGCGGCGCCGCAGTCC
GGCGCGAGGACGGCAGCATATTGTATCGCCTTCGCTCCTCTTCCCCCTAA
ACCGGACTCCAGCCCTCCGCAACAGCAGCAGCACCAGCAGCACCAGCAGC
ACCAGCAGCACCAGCAGCACCAGCAGCCTCAACAGCAGCAGCCGCACCAG
CAGCTGATCTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1290:20939..21949+

>mRNA_H-canaliculatus_F_contig1290.2422.1 ID=mRNA_H-canaliculatus_F_contig1290.2422.1|Name=mRNA_H-canaliculatus_F_contig1290.2422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1290:20939..21949+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTCAACAAATTTCTGCGCCGAACGCTGCGTCGCTGAGTGACCCACA
CACGCTTCTGCCCTCAGTGATTTTCCATCGGGGCGCGGCGGTGGCGACGG
CTCCCGCGGCGGTCCTAGGGGCGGTAGCGGCTACAGCGGAAGAGGACGTG
GTAGATGGGGCATGGGGGGCCCTTCGCGCGGCCGGGAGCCTGGTGGTGCT
GGAAGGGGGCGGCCGCATGGGTAGATGGGGCTCGGACAGAGATGGCCGGA
ACGGGCGATGCTCTCCATGCTCCCCAGACAACCGCCTTTGCAGCCGCGGA
TACCTAATGTACTGCCGAAATCTCGCCATTTTCTTCCTCTCAACCACCTC
GCTTAGGGGAAAAGGGGGGATGTTCGACTGTGGCTCAAACGCTGTCCACC
TCGAGTCGGGCTCCGCAGTTCCGCCTGTCGCACGAAAAGGTGAAGTGTTT
GAGTTACCAGGCGTTGTCGACTCGGGAACACGTATGATGGCTGCACGGCG
TTGCCGCGTTTCGAGGGCAGCTGTGGTTACTGCGGCCAGTGCGGACAGAT
GAATGCGTCAACAAATTTCTGCGCCGAACGCTGCGTCGCTGAGTGACCCA
CACACGCTTCTGCCCTCAGTGATTTTCCATCGGGGCGCGGCGGTGGCGAC
GGCTCCCGCGGCGGTCCTAGGGGCGGTAGCGGCTACAGCGGAAGAGGACG
TGGTAGATGGGGCATGGGGGGCCCTTCGCGCGGCCGGGAGCCTGGTGGTG
CTGGAAGGGGGCGGCCGCATGGGTAGATGGGGCTCGGACAGAGATGGCCG
GAACGGGCGATGCTCTCCATGCTCCCCAGACAACCGCCTTTGCAGCCGCG
GATACCTAATGTACTGCCGAAATCTCGCCATTTTCTTCCTCTCAACCACC
TCGCTTAGGGGAAAAGGGGGGATGTTCGACTGTGGCTCAAACGCTGTCCA
CCTCGAGTCGGGCTCCGCAGTTCCGCCTGTCGCACGAAAAGGTGAAGTGT
TTGAGTTACCAGGCGTTGTCGACTCGGGAACACGTATGATGGCTGCACGG
CGTTGCCGCGTTTCGAGGGCAGCTGTGGTTACTGCGGCCAGTGCGGACAG
ATGA
back to top