mRNA_H-canaliculatus_F_contig1290.2421.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1290.2421.1
Unique NamemRNA_H-canaliculatus_F_contig1290.2421.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1290.2421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1290contigH-canaliculatus_F_contig1290:15405..17963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1290.2421.1prot_H-canaliculatus_F_contig1290.2421.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1290 15405..15728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.7854812-CDS-H-canaliculatus_F_contig1290:15404..157281622929021.7854812-CDS-H-canaliculatus_F_contig1290:15404..15728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1290 15405..15728 -
1696845650.5653577-CDS-H-canaliculatus_F_contig1290:15404..157281696845650.5653577-CDS-H-canaliculatus_F_contig1290:15404..15728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1290 15405..15728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.8034465-UTR-H-canaliculatus_F_contig1290:15728..157431622929021.8034465-UTR-H-canaliculatus_F_contig1290:15728..15743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 15729..15743 -
1696845650.5787115-UTR-H-canaliculatus_F_contig1290:15728..157431696845650.5787115-UTR-H-canaliculatus_F_contig1290:15728..15743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 15729..15743 -
1622929021.8179843-UTR-H-canaliculatus_F_contig1290:17844..179631622929021.8179843-UTR-H-canaliculatus_F_contig1290:17844..17963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 17845..17963 -
1696845650.5904648-UTR-H-canaliculatus_F_contig1290:17844..179631696845650.5904648-UTR-H-canaliculatus_F_contig1290:17844..17963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1290 17845..17963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1290.2421.1

>prot_H-canaliculatus_F_contig1290.2421.1 ID=prot_H-canaliculatus_F_contig1290.2421.1|Name=mRNA_H-canaliculatus_F_contig1290.2421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MVENLTEEEYEASEGIEVWGRGGYCYSCCSCSYRCRHDRYCRNFYSSCAL
APVSAVVATTIEVTVVVDGTFSPSMLLLLLVLLILPLWSRPLLLLTCAVC
LIFCILQ*
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mRNA from alignment at H-canaliculatus_F_contig1290:15405..17963-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1290.2421.1 ID=mRNA_H-canaliculatus_F_contig1290.2421.1|Name=mRNA_H-canaliculatus_F_contig1290.2421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2559bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1290:15405..17963- (Hapterophycus canaliculatus Oshoro5f female)
CCGCGAAAGTCGACCGTGGCCCCGACCGCGACTGGGGCGGAGGGGCCGAC
ATGTTACGCCCCGGTACTTGAAGATGTTTTAGAAAAAAACACAAGAACAC
CGCAGGAACACCTCCTGAGGTACGTCGTGGAAGGCGTAGCTCGAGGCTTC
TGTTGAGTTCCAAACGATGGTTGGTTCAGACTTTTCACCCCAAAAAAATC
ATCAGTGAATGCCTTGCGCAAAACCTACCCAACAAGCATGAAAAGAAACG
GGTGTCATACTGACCGCCGTGTCAAACTGAAGAGGTTGACGTAGGCGGAT
TTTTTTGTGAGGCCGTGTCAGTCGCACAAAAGCCGAAAATGTGTTTCGGT
CAATCAGCAGGCGTCAAATGTTTCAACAATGATCAGGCTTTCGCAAAACG
GCCACGAAAAAAATCATTTGTTGTGACGCGTTTTTTCATAATCACCCCGC
ATTTTTCCAAATTTACAGCCGTTACGCTCTCGCCTGGTGCTGTTGTGTTG
CTGCTGCGTACCGCTGCAGCACACCTGTACACACACGCGGTGGTATGCAA
CCACAACCCACACATGAAGGCACTGCAACGCAAACATGGCAATGCTGTAG
CTCTCAAACGGAAAGTGTCGGCCCTGGGAGGAATGCAAAACAAGAAAACC
AAAAGCGTTGGAAACTGAAGTGCACGTACCACAGACAGCCGGCCGCACAC
AGTCTGTACTAGAACAGACCCGTCGTACGAGTACGAGACAAAAGCCGCTG
CGCTCGTGGACGCAGAGAACTAGAGAAGGGAGCTGGAGAAGCCAAGAAGA
GTCAGTTTTTCGATTAATGAACTCGTTCTGGCCCAGCCCGAATTTATGAA
GAGTTGTTTGTCTTGCCAAAAGACAGCCCCGTATCTACGACTTGAATTCA
CATTAATATTGTGCGGCCCCCGGAACGCCGAGCCACGACAGATTCTCATT
TAACCCTTGTATTGCAATGATAAAGAAGATTCATCCCTGTGAGGATCCAA
GAAAAAGTGGCTTTAAAACCCGTTCGACTGGCGACGTGGACTCCGTTATA
TACGCCAAATTCTCCACTTTGCCGCGTGTTTGCAGGTAGTCTCGTTTGTA
TAACCCTTGTACTATGCCCTGGTGATACTTTTCTTTTATTTTCTGGTTTC
GACAGCGGCTCCACATGTCAAAGGAGGCCCCGCAAAATTTTTCGTTTCGT
TATCGACAAAACTTCCTGTTCATTTCTCGTTTCACGTCGAACTAGCACCC
GAAAACGTCATTTTTTGCTTTTTTAACCAAGTCATTAGCGGGTCACGTAG
GGAAATGAAACCTCGTTGTACTAAGGCTTCAAACTTCACGCCGTTTTTTC
GAGCTGGCCTCTGAAACGTTGCACACGCTTGCCGTGGGACGTAACAAAAC
TTCGGATGATCGAGGTTTTTTAGTTTGGGTATTTTTGCACCGGTTTGTGG
GGGTCCCAGAAAGGGAAAGGCTTCATAGGGGCCCCGGGACCCCCAAAAAC
CGGTGCTACAGTAACATGGCTACAACAAAACACCCTCGACCTTCGAAATT
TTCTGCGGACCTCAACAAAGCGTGTGCAAACTTTTAGATTAAAACTCTCG
AAAGCGGCCTAAAGTTGGGCTGATGAATATTTTTTGGGTGAAAAGCCTGA
ACCAGCCTGTAACGCATCTTGTTCATTACGTTCGCTCTTCGATTGATACC
CCTCTCCTTACGCTTGGATGGGGATTTCACTCTTTTTTTCGTTCTTTCGC
GTCTAGTTCCTCCCCAAATCTCATTTCAATGTTTCGTAGCCTTTTTGGTC
GTCCAATTGCCGCGTCTGACAAGCAGGAGCGAAGAACCAGGAGTTGAGAC
TCTTTTCTTGCTGCCCACAAGTTTTTGGTGCTTCCTCACTTCTCTCATGC
TGTGTCTGTCAGATCTATTTTTGTCTTTCCGTTTTGTTTTTCTGCTTTAC
CTTTTTCCATGTTGCTATCTTCTTTACCGCCAAGGAGGGTACAAGTGTAC
GTTATTTCAGTTGGTGAGTAGCTTGTGACCACGGAAGAACGTCTTCTGAG
ATGGAATTTTTTATGTGAAGACGACAAGAAGAAAACAACTTTGGAGAGCT
CTCCCGTAGGACGCTTCCCTTCTAGCTGCTACGTATTGATACCGAGCTCA
TTTCGTTCGAAGATGAACCGTTCGTTGCGGCCTTGCTCTTACCGTCATTT
TTCTCTCTGATGTATGCAAGTAACACGGACCACAGATGGTGGAGAACCTG
ACAGAGGAGGAGTACGAGGCGTCGGAAGGCATCGAGGTGTGGGGACGGGG
CGGCTACTGCTACAGCTGCTGCTCGTGCAGCTACCGCTGCCGGCACGATC
GCTATTGTCGAAACTTCTATAGTTCTTGTGCTCTTGCGCCTGTCTCAGCC
GTCGTTGCTACTACCATCGAGGTGACTGTCGTTGTTGATGGTACGTTTTC
GCCATCGATGCTTCTGCTGCTACTTGTGTTGCTGATCTTGCCACTGTGGT
CTCGTCCGTTGCTGCTGTTGACGTGTGCGGTGTGCCTCATTTTTTGTATT
CTGCAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1290:15405..17963-

>mRNA_H-canaliculatus_F_contig1290.2421.1 ID=mRNA_H-canaliculatus_F_contig1290.2421.1|Name=mRNA_H-canaliculatus_F_contig1290.2421.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1290:15405..17963- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGAGAACCTGACAGAGGAGGAGTACGAGGCGTCGGAAGGCATCGA
GGTGTGGGGACGGGGCGGCTACTGCTACAGCTGCTGCTCGTGCAGCTACC
GCTGCCGGCACGATCGCTATTGTCGAAACTTCTATAGTTCTTGTGCTCTT
GCGCCTGTCTCAGCCGTCGTTGCTACTACCATCGAGGTGACTGTCGTTGT
TGATGGTACGTTTTCGCCATCGATGCTTCTGCTGCTACTTGTGTTGCTGA
TCTTGCCACTGTGGTCTCGTCCGTTGCTGCTGTTGACGTGTGCGGTGTGC
CTCATTTTTTGTATTCTGCAGTAGATGGTGGAGAACCTGACAGAGGAGGA
GTACGAGGCGTCGGAAGGCATCGAGGTGTGGGGACGGGGCGGCTACTGCT
ACAGCTGCTGCTCGTGCAGCTACCGCTGCCGGCACGATCGCTATTGTCGA
AACTTCTATAGTTCTTGTGCTCTTGCGCCTGTCTCAGCCGTCGTTGCTAC
TACCATCGAGGTGACTGTCGTTGTTGATGGTACGTTTTCGCCATCGATGC
TTCTGCTGCTACTTGTGTTGCTGATCTTGCCACTGTGGTCTCGTCCGTTG
CTGCTGTTGACGTGTGCGGTGTGCCTCATTTTTTGTATTCTGCAGTAG
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