mRNA_H-canaliculatus_F_contig129.2416.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig129.2416.1
Unique NamemRNA_H-canaliculatus_F_contig129.2416.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig129.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig129contigH-canaliculatus_F_contig129:4282..5243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size962
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig129.2416.1prot_H-canaliculatus_F_contig129.2416.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig129 4350..4967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.0418189-UTR-H-canaliculatus_F_contig129:4281..43491622929021.0418189-UTR-H-canaliculatus_F_contig129:4281..4349Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 4282..4349 +
1696845650.2273142-UTR-H-canaliculatus_F_contig129:4281..43491696845650.2273142-UTR-H-canaliculatus_F_contig129:4281..4349Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 4282..4349 +
1622929021.0836165-UTR-H-canaliculatus_F_contig129:4967..52431622929021.0836165-UTR-H-canaliculatus_F_contig129:4967..5243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 4968..5243 +
1696845650.2460694-UTR-H-canaliculatus_F_contig129:4967..52431696845650.2460694-UTR-H-canaliculatus_F_contig129:4967..5243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig129 4968..5243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.0667553-CDS-H-canaliculatus_F_contig129:4349..49671622929021.0667553-CDS-H-canaliculatus_F_contig129:4349..4967Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 4350..4967 +
1696845650.237112-CDS-H-canaliculatus_F_contig129:4349..49671696845650.237112-CDS-H-canaliculatus_F_contig129:4349..4967Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig129 4350..4967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig129.2416.1

>prot_H-canaliculatus_F_contig129.2416.1 ID=prot_H-canaliculatus_F_contig129.2416.1|Name=mRNA_H-canaliculatus_F_contig129.2416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MTHAPTPLHRRSRLLGVGASCVLGGGGGGLFRLKRVLNTCGDILRRTAIA
KNPNHHANFGPSVLSPFWKNAQIRSSDHANYCRVHRPSMYHSQSPNPPLG
HASPPVVPFRWVGTSPPTASLLLIALQLHMRSSHAQPCGLQTTGTSTAKK
RKRQSVCLLLFPFRPFADWSGLLNVVRALPFYFFSSLMLFLPALTFVFLS
VDVCV*
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mRNA from alignment at H-canaliculatus_F_contig129:4282..5243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig129.2416.1 ID=mRNA_H-canaliculatus_F_contig129.2416.1|Name=mRNA_H-canaliculatus_F_contig129.2416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=962bp|location=Sequence derived from alignment at H-canaliculatus_F_contig129:4282..5243+ (Hapterophycus canaliculatus Oshoro5f female)
TGTTGAGAGAGGTCCCATTACTGTTGCACCCCCGCTGCCAGCGGGGTATC
CCTTCCCATTCCTTGACCATGACTCACGCCCCAACCCCCCTGCACCGGCG
CTCGCGCTTGTTGGGGGTGGGTGCCAGCTGCGTTCTCGGAGGAGGAGGAG
GGGGGCTGTTTCGTTTAAAGCGGGTGCTCAACACATGCGGGGATATATTG
CGGAGGACGGCCATCGCTAAAAATCCAAATCACCACGCGAATTTCGGCCC
GAGCGTTCTCTCGCCGTTCTGGAAAAACGCGCAAATTCGTTCGTCCGATC
ATGCCAATTACTGTCGCGTACATCGACCCTCAATGTACCACTCCCAGTCG
CCTAACCCCCCCCTTGGTCATGCGTCACCTCCTGTTGTCCCTTTTCGATG
GGTAGGTACTTCGCCCCCGACGGCAAGCCTTCTCCTCATTGCTCTCCAGC
TTCATATGCGGTCCTCCCACGCACAGCCATGCGGACTGCAGACCACAGGC
ACCTCAACCGCAAAGAAGCGAAAGAGGCAATCTGTTTGCCTTCTTCTCTT
CCCTTTCAGGCCCTTCGCAGATTGGTCTGGGCTCCTCAATGTAGTTCGCG
CTCTTCCTTTTTACTTTTTTTCCTCTCTGATGTTGTTTCTCCCTGCGCTA
ACTTTTGTGTTTCTTTCAGTGGATGTGTGTGTGTAACCTTATCGTCTTCC
CCCTTTCTTCTCGAAGGTTCCCATCGAACCTTCCGCGAAACAAAATTTCT
ATCCCGTTTCCGCCAAAAGGCCAGGTTATACTCCTCCTACCGCCGCTCCA
GTACAACCTTCCACATTGCCTCCACAGTTGTACAGGGGTCATGTTGTAGT
TTTCCAAACATTTGCTGCCAAAGTAGCCCGCTGACGCGTTTTTCACCCTG
CTGCGAACAACTTTTACAACCACCTTAGTGTACTACCATGAATCTACGAG
TAAGTGTCACCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig129:4282..5243+

>mRNA_H-canaliculatus_F_contig129.2416.1 ID=mRNA_H-canaliculatus_F_contig129.2416.1|Name=mRNA_H-canaliculatus_F_contig129.2416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig129:4282..5243+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTCACGCCCCAACCCCCCTGCACCGGCGCTCGCGCTTGTTGGGGGT
GGGTGCCAGCTGCGTTCTCGGAGGAGGAGGAGGGGGGCTGTTTCGTTTAA
AGCGGGTGCTCAACACATGCGGGGATATATTGCGGAGGACGGCCATCGCT
AAAAATCCAAATCACCACGCGAATTTCGGCCCGAGCGTTCTCTCGCCGTT
CTGGAAAAACGCGCAAATTCGTTCGTCCGATCATGCCAATTACTGTCGCG
TACATCGACCCTCAATGTACCACTCCCAGTCGCCTAACCCCCCCCTTGGT
CATGCGTCACCTCCTGTTGTCCCTTTTCGATGGGTAGGTACTTCGCCCCC
GACGGCAAGCCTTCTCCTCATTGCTCTCCAGCTTCATATGCGGTCCTCCC
ACGCACAGCCATGCGGACTGCAGACCACAGGCACCTCAACCGCAAAGAAG
CGAAAGAGGCAATCTGTTTGCCTTCTTCTCTTCCCTTTCAGGCCCTTCGC
AGATTGGTCTGGGCTCCTCAATGTAGTTCGCGCTCTTCCTTTTTACTTTT
TTTCCTCTCTGATGTTGTTTCTCCCTGCGCTAACTTTTGTGTTTCTTTCA
GTGGATGTGTGTGTGTAAATGACTCACGCCCCAACCCCCCTGCACCGGCG
CTCGCGCTTGTTGGGGGTGGGTGCCAGCTGCGTTCTCGGAGGAGGAGGAG
GGGGGCTGTTTCGTTTAAAGCGGGTGCTCAACACATGCGGGGATATATTG
CGGAGGACGGCCATCGCTAAAAATCCAAATCACCACGCGAATTTCGGCCC
GAGCGTTCTCTCGCCGTTCTGGAAAAACGCGCAAATTCGTTCGTCCGATC
ATGCCAATTACTGTCGCGTACATCGACCCTCAATGTACCACTCCCAGTCG
CCTAACCCCCCCCTTGGTCATGCGTCACCTCCTGTTGTCCCTTTTCGATG
GGTAGGTACTTCGCCCCCGACGGCAAGCCTTCTCCTCATTGCTCTCCAGC
TTCATATGCGGTCCTCCCACGCACAGCCATGCGGACTGCAGACCACAGGC
ACCTCAACCGCAAAGAAGCGAAAGAGGCAATCTGTTTGCCTTCTTCTCTT
CCCTTTCAGGCCCTTCGCAGATTGGTCTGGGCTCCTCAATGTAGTTCGCG
CTCTTCCTTTTTACTTTTTTTCCTCTCTGATGTTGTTTCTCCCTGCGCTA
ACTTTTGTGTTTCTTTCAGTGGATGTGTGTGTGTAA
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